An isochore map of human chromosomes

@article{citeulike:785027, abstract = {Isochores are large DNA segments (>>300 kb on average) that are characterized by an internal variation in GC well below the full variation seen in the mammalian genome. Precisely defining in terms of size and composition as well as mapping the isochores on human chromosomes have, however, remained largely unsolved problems. Here we used a very simple approach to segment the human chromosomes de novo, based on assessments of GC and its variation within and between adjacent regions. We obtain a complete coverage of the human genome (neglecting the remaining gaps) by [\~{}]3200 isochores, which may be visualized as the ultimate chromosomal bands. Isochores visibly belong to five families characterized by different GC levels, as expected from previous investigations. Since we previously showed that isochores are tightly linked to basic biological properties such as gene density, replication timing, and recombination, the new level of detail provided by the isochore map will help the understanding of genome structure, function, and evolution. 10.1101/gr.4910606}, author = {Costantini, Maria and Clay, Oliver and Auletta, Fabio and Bernardi, Giorgio }, citeulike-article-id = {785027}, doi = {http://dx.doi.org/10.1101/gr.4910606}, journal = {Genome Res.}, keywords = {isochores}, month = {April}, number = {4}, pages = {536--541}, posted-at = {2008-01-09 02:36:30}, priority = {2}, title = {An isochore map of human chromosomes}, url = {http://dx.doi.org/10.1101/gr.4910606}, volume = {16}, year = {2006} }

TY - JOUR ID - citeulike:785027 L3 - citeulike-article-id:785027 N2 - Isochores are large DNA segments (>>300 kb on average) that are characterized by an internal variation in GC well below the full variation seen in the mammalian genome. Precisely defining in terms of size and composition as well as mapping the isochores on human chromosomes have, however, remained largely unsolved problems. Here we used a very simple approach to segment the human chromosomes de novo, based on assessments of GC and its variation within and between adjacent regions. We obtain a complete coverage of the human genome (neglecting the remaining gaps) by [~]3200 isochores, which may be visualized as the ultimate chromosomal bands. Isochores visibly belong to five families characterized by different GC levels, as expected from previous investigations. Since we previously showed that isochores are tightly linked to basic biological properties such as gene density, replication timing, and recombination, the new level of detail provided by the isochore map will help the understanding of genome structure, function, and evolution. 10.1101/gr.4910606 IS - 4 JF - Genome Res. EP - 541 TI - An isochore map of human chromosomes VL - 16 SP - 536 KW - isochores AU - Costantini, Maria AU - Clay, Oliver AU - Auletta, Fabio AU - Bernardi, Giorgio PY - 2006/April/01/ UR - http://dx.doi.org/10.1101/gr.4910606 ER -