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gjugglers library [176 articles]

Neue Artikel in gjugglers Bibliothek.
  • A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 281-288.
    by GJ Faulkner, AR Forrest, AM Chalk, K Schroder, Y Hayashizaki, P Carninci, DA Hume, SM Grimmond
    posted to tss by gjuggler on 2008-05-16 15:18:34 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to indels by gjuggler on 2008-05-12 11:19:30 as ** along with 4 people dquest Stew neils cabbagesofdoom
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to general by gjuggler on 2008-05-08 10:01:16 as ** along with 9 people pbull Tominator ealloza hpaces lp2 natstreet cabbagesofdoom fhsantanna neils
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to annotation alignment by gjuggler on 2008-05-08 09:53:45 as ** along with 3 people Ema maximilianh eckart_bindewald
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to gersteinlab by gjuggler on 2008-05-08 09:52:39 as ** along with 3 people and 1 group Retchless caseybrown stajich Berkeley Mycology
  • Designating eukaryotic orthology via processed transcription units.
    Nucleic acids research (29 April 2008)
    by Meng-Ru R Ho, Wen-Jung J Jang, Chun-Houh H Chen, Lan-Yang Y Ch'ang, Wen-Chang C Lin
    posted to splicing by gjuggler on 2008-05-02 09:32:34 as **
  • High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells
    PLoS Biology, Vol. 4, No. 6. (1 June 2006)
    by Grzegorz Kudla, Leszek Lipinski, Fanny Caffin, Aleksandra Helwak, Maciej Zylicz
    posted to isochores by gjuggler on 2008-05-01 14:30:45 as ** along with 2 people and 1 group cmm djkt FAB-lab
  • The evolutionary advantage of recombination.
    Genetics, Vol. 78, No. 2. (October 1974), pp. 737-756.
    by J Felsenstein
    posted to dupldiv by gjuggler on 2008-05-01 13:29:45 as ** along with 2 people timflutre usagi-kirin
  • THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION. II. INDIVIDUAL SELECTION FOR RECOMBINATION
    Genetics, Vol. 83, No. 4. (1 August 1976), pp. 845-859.
    by Joseph Felsenstein, Shozo Yokoyama
    posted to dupldiv by gjuggler on 2008-05-01 13:28:50 as **
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob A A Tennessen
    posted to mutsel dupldiv by gjuggler on 2008-05-01 11:55:00 as **
  • Phylogenetic distribution of large-scale genome patchiness
    BMC Evolutionary Biology, Vol. 8 (11 April 2008), 107.
    by Jose L Oliver, Pedro Bernaola-Galvan, Michael Hackenberg, Pedro Carpena
    posted to isochores by gjuggler on 2008-05-01 11:05:44 as ** along with 1 person wisdom_love
  • Low Rates of Expression Profile Divergence in Highly Expressed Genes and Tissue-Specific Genes During Mammalian Evolution
    Molecular Biology and Evolution, Vol. 23, No. 6. (June 2006), pp. 1119-1128.
    by Liao, Ben-Yang, Zhang, Jianzhi
    posted to tss-breadth by gjuggler on 2008-04-30 16:31:19 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
    Nature (10 April 2008)
    by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, Masahiro Kaneda, Satomi Kuramochi-Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, Azim M Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki
    posted to pseudogenes by gjuggler on 2008-04-30 10:02:34 as ** along with 1 person rschulz
  • Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
    Nature (10 April 2008)
    by Oliver H Tam, Alexei A Aravin, Paula Stein, Angelique Girard, Elizabeth P Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M Schultz, Gregory J Hannon
    posted to pseudogenes by gjuggler on 2008-04-20 17:58:51 as ** along with 1 person rschulz
  • Multiple transcription start sites for FOXP2 with varying cellular specificities
    Gene, Vol. In Press, Accepted Manuscript
    by Diane I Schroeder, Richard M Myers
    posted to tss by gjuggler on 2008-04-15 18:37:48 as **
  • Phylogeny Programs
    http://evolution.genetics.washington.edu/phylip/software.html (14 April 2008)
    by J Felsenstein
    posted to nopdf phylowidget by gjuggler on 2008-04-14 15:27:06 as **
  • Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila
    Proceedings of the National Academy of Sciences (1 April 2008), 0710892105.
    by Steffen Beisswanger, Wolfgang Stephan
    posted to general by gjuggler on 2008-04-07 09:59:18 as ** along with 2 people maximilianh oelemento
  • Multiple sequence alignment using partial order graphs.
    Bioinformatics, Vol. 18, No. 3. (March 2002), pp. 452-464.
    by C Lee, C Grasso, MF Sharlow
    posted to alignment by gjuggler on 2008-03-31 14:28:50 as ** along with 5 people and 3 groups ana Cortel AbnerCYH azazello wenhan structural_bioinformatics Bioinformatics MBLAB
  • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    Proceedings of the National Academy of Sciences, Vol. 93, No. 22. (29 October 1996), pp. 12098-12103.
    by Burkhard Morgenstern, Andreas Dress, Thomas Werner
    posted to alignment by gjuggler on 2008-03-31 09:35:14 as ** along with 1 person adijr
  • The many faces of sequence alignment.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 6-22.
    by S Batzoglou
    posted to alignment by gjuggler on 2008-03-31 09:31:56 as ** along with 4 people and 2 groups balajis dpollard sdvillal yoanjacquemin Bioinformatics EisenLab
  • Multiple alignment by sequence annealing
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e24-e29.
    by S Schwartz, Ariel, Pachter, Lior
    posted to alignment general by gjuggler on 2008-03-31 09:27:46 as **
  • Phylogenetic shadowing of primate sequences to find functional regions of the human genome.
    Science, Vol. 299, No. 5611. (28 February 2003), pp. 1391-1394.
    by D Boffelli, J McAuliffe, D Ovcharenko, KD Lewis, I Ovcharenko, L Pachter, EM Rubin
    posted to general by gjuggler on 2008-03-19 18:48:09 as ** along with 1 person and 1 group nickluscombe EBI-regulation
  • A large family of ancient repeat elements in the human genome is under strong selection
    PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.
    by Michael Kamal, Xiaohui Xie, Eric S Lander
    posted to general by gjuggler on 2008-03-19 18:43:08 as ** along with 4 people and 2 groups aprasad balicea cmm cisevol FAB-lab cis-regulatory-evolution
  • Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774.
    by Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B Brown, Peter Bickel, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A Stone, Kate R Rosenbloom, James W Kent, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A Field, Richard A Moore, Carrie A Matthewson, Jacqueline E Schein, Marco A Marra, Stylianos E Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D Green, Arend Sidow
    posted to alignment by gjuggler on 2008-03-19 18:40:29 as ** along with 7 people and 4 groups dpollard dchughes AaronDarling djkt ghattem Garamonfok elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Benchmarking tools for the alignment of functional noncoding DNA.
    BMC Bioinformatics, Vol. 5 (21 January 2004)
    by DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
    posted to alignment by gjuggler on 2008-03-19 18:34:36 as ** along with 4 people and 1 group indigoviolet lilou adijr idonaldson EisenLab
  • Differences between pair-wise and multi-sequence alignment methods affect vertebrate genome comparisons
    Trends in Genetics, Vol. 22, No. 4. (April 2006), pp. 187-193.
    by Elliott H Margulies, Christina W Chen, Eric D Green
    posted to alignment by gjuggler on 2008-03-19 18:32:36 as ** along with 2 people and 2 groups dchughes smount G4ID Genetics-of-Gambling
  • Dynamic programming alignment accuracy.
    J Comput Biol, Vol. 5, No. 3. (1998), pp. 493-504.
    by I Holmes, R Durbin
    posted to alignment nopdf by gjuggler on 2008-03-19 18:25:52 as **
  • Evolution of protein-coding genes in Drosophila
    Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 114-123.
    by Amanda M Larracuente, Timothy B Sackton, Anthony J Greenberg, Alex Wong, Nadia D Singh, David Sturgill, Yu Zhang, Brian Oliver, Andrew G Clark
    posted to tss-breadth by gjuggler on 2008-03-19 12:56:08 as ** along with 2 people operon djkt
  • Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 650-659.
    by I Yanai, H Benjamin, M Shmoish, V Chalifa-Caspi, M Shklar, R Ophir, A Bar-Even, S Horn-Saban, M Safran, E Domany, D Lancet, O Shmueli
    posted to tss-breadth by gjuggler on 2008-03-18 09:55:22 as **
  • Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29.
    by Dirk A Kleinjan, Ruth M Bancewicz, Philippe Gautier, Ralf Dahm, Helia B Schonthaler, Giuseppe Damante, Anne Seawright, Ann M Hever, Patricia L Yeyati, Veronica van Heyningen, Pedro Coutinho
    posted to dupldiv by gjuggler on 2008-03-18 09:47:31 as ** along with 2 people brant emptyhb
  • Evolution of gene sequence and gene expression are not correlated in yeast
    Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 109-113.
    by Itay Tirosh, Naama Barkai
    posted to general by gjuggler on 2008-03-18 09:38:00 as ** along with 2 people djkt huali
  • Simulated responses of cerebellar Purkinje cells are independent of the dendritic location of granule cell synaptic inputs.
    Proc Natl Acad Sci U S A, Vol. 91, No. 11. (24 May 1994), pp. 4736-4740.
    by E De Schutter, JM Bower
    posted to test by gjuggler on 2008-03-17 10:41:50 as ** along with 1 person mattions
  • An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice.
    J Neurophysiol, Vol. 71, No. 1. (January 1994), pp. 375-400.
    by E De Schutter, JM Bower
    posted to test by gjuggler on 2008-03-17 10:41:39 as ** along with 1 person mattions
  • An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responses.
    J Neurophysiol, Vol. 71, No. 1. (January 1994), pp. 401-419.
    by E De Schutter, JM Bower
    posted to test by gjuggler on 2008-03-17 10:41:18 as ** along with 1 person mattions
  • Phylogenetic Hidden Markov Models
    (2005), pp. 325-351.
    by A Siepel, D Haussler
    edited by R Nielsen
    posted to no-tag by gjuggler on 2008-03-17 01:26:45 as **
  • TREEVIEW: An application to display phylogenetic trees on personal computers
    Computer Applications in the Biosciences, Vol. 12 (1996), pp. 357-358.
    by RD Page
    posted to nopdf phylowidget by gjuggler on 2008-03-13 10:48:34 as ** along with 1 group FAB-lab
  • PAUP*: phylogenetic analysis using parsimony, version 4.0b10
    (2003)
    by DL Swofford
    posted to nopdf phylowidget by gjuggler on 2008-03-13 10:46:18 as ** along with 1 group FAB-lab
  • PHYLIP - Phylogeny Inference Package (Version 3.2)
    Cladistics, Vol. 5 (1989), pp. 164-166.
    by Joseph Felsenstein
    posted to nopdf phylowidget by gjuggler on 2008-03-13 10:32:22 as ** along with 1 group FAB-lab
  • The Application of a Linear Algebra to the Analysis of Mutation Rates
    Journal of Theoretical Biology, Vol. 199, No. 1. (7 July 1999), pp. 11-23.
    by ME Jones, SM Thomas, K Clarke
    posted to mutation by gjuggler on 2008-03-10 15:51:04 as **
  • Reconstruction of DNA sequences using genetic algorithms and cellular automata: Towards mutation prediction?
    Biosystems, Vol. 92, No. 1. (April 2008), pp. 61-68.
    by Ch Mizas, Sirakoulis, V Mardiris, I Karafyllidis, N Glykos, R Sandaltzopoulos
    posted to mutation by gjuggler on 2008-03-10 15:48:58 as **
  • Exploratory search: from finding to understanding
    Commun. ACM, Vol. 49, No. 4. (April 2006), pp. 41-46.
    by Gary Marchionini
    posted to test by gjuggler on 2008-03-08 15:25:05 as ** along with 24 people and 13 groups jana cmalek sga72 creswick sabunome indratmo takeha-e felkerk maike ianturton brusilovsky katja eduardocruz tkmosk jonsmith azygmunt yoel lillejul bangb ioannnis kimym IBTheory jryall-tags acslab CMU-HCII social_navigation RiSE GLAMIR Knowledge_Management ilps AGH-IISG Adaptive-Web ahat L3S IBTheory Social_Learning_Software_Lab ACS
  • Success factors for implementing global information systems
    Commun. ACM, Vol. 50, No. 1. (January 2007), pp. 52-58.
    by Markus Biehl
    posted to test by gjuggler on 2008-03-08 15:24:52 as ** along with 1 person and 1 group azygmunt AGH-IISG
  • A case for a complexity-effective, width-partitioned microarchitecture
    ACM Trans. Archit. Code Optim., Vol. 3, No. 3. (September 2006), pp. 295-326.
    by Olivier Rochecouste, Gilles Pokam, Andr&\#233; Seznec
    posted to test by gjuggler on 2008-03-08 15:08:31 as ** along with 1 person jirawat
  • Why England? Demand, Growth and Inequality During the Industrial Revolution
    by N Voigtländer, HJ Voth
    posted to test by gjuggler on 2008-03-03 16:20:16 as ** along with 1 person jorgen
  • Chance favors a prepared genome.
    Proc Natl Acad Sci U S A (25 February 2008)
    by Jonathan P P Stoye, Melvyn W W Yap
    posted to general by gjuggler on 2008-02-28 09:54:47 as ** along with 2 people and 1 group kieran101 wsjames Oxford Virology
  • Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.
    Genome Res, Vol. 14, No. 4. (April 2004), pp. 555-566.
    by MS Taylor, CP Ponting, RR Copley
    posted to tss by gjuggler on 2008-02-26 12:41:17 as ** along with 2 people and 3 groups ana aprasad structural_bioinformatics Bioinformatics Nie
  • Does radial nuclear organisation influence DNA damage?
    Chromosome Research, Vol. 13, No. 4. (June 2005), pp. 377-388.
    by Elodie Gazave, Philippe Gautier, Susan Gilchrist, Wendy Bickmore
    posted to tss ultraconserved by gjuggler on 2008-02-26 12:35:16 as **
  • Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 530-540.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to tss-breadth by gjuggler on 2008-02-25 15:43:47 as ** along with 2 people and 1 group penka cjeans Nie
  • The functional landscape of mouse gene expression.
    J Biol, Vol. 3, No. 5. (2004)
    by W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, N Mohammad, MD Robinson, R Zirngibl, E Somogyi, N Laurin, E Eftekharpour, E Sat, J Grigull, Q Pan, WT Peng, N Krogan, J Greenblatt, M Fehlings, D van der Kooy, J Aubin, BG Bruneau, J Rossant, BJ Blencowe, BJ Frey, TR Hughes
    posted to tss-breadth by gjuggler on 2008-02-25 10:38:06 as ** along with 5 people jyuh miguel j3xucite Garamonfok vidhya
  • Accurate prediction of protein-protein interactions from sequence alignments using a Bayesian method
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Lukas Burger, Erik van Nimwegen
    posted to nopdf by gjuggler on 2008-02-22 16:52:00 as ** along with 9 people kengg grahamc laughcry zwang biomcgary cabbagezs roys cdeane phoenixzxl
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