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evafs library [544 articles]

Neue Artikel in evafs Bibliothek.
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to rna homology by evaf on 2008-06-11 21:42:12 as read along with 9 people and 2 groups jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 yoanjacquemin G4ID Genetics-of-Gambling
  • RNAbor: a web server for RNA structural neighbors.
    Nucleic Acids Res (25 May 2007)
    by Eva Freyhult, Vincent Moulton, Peter Clote
    posted to structure rna by evaf on 2008-06-11 21:39:21 as read along with 2 people and 2 groups marcius sebastien_vigneau BioinfoCIPF SGU-CIPF
  • Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression.
    Cancer cell, Vol. 5, No. 5. (May 2004), pp. 489-500.
    by CH Chung, JS Parker, G Karaca, J Wu, WK Funkhouser, D Moore, D Butterfoss, D Xiang, A Zanation, X Yin, WW Shockley, MC Weissler, LG Dressler, CG Shores, WG Yarbrough, CM Perou
    posted to no-tag by evaf on 2008-06-11 11:32:04 as **
  • Molecular portraits of human breast tumours.
    Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752.
    by CM Perou, T Sørlie, MB Eisen, M van de Rijn, SS Jeffrey, CA Rees, JR Pollack, DT Ross, H Johnsen, LA Akslen, O Fluge, A Pergamenschikov, C Williams, SX Zhu, PE Lønning, AL Børresen-Dale, PO Brown, D Botstein
    posted to no-tag by evaf on 2008-06-11 11:31:05 as ** along with 2 people jfr frohike
  • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    PNAS, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874.
    by Therese Sorlie, Charles M Perou, Robert Tibshirani, Turid Aas, Stephanie Geisler, Hilde Johnsen, Trevor Hastie, Michael B Eisen, Matt van de Rijn, Stefanie S Jeffrey, Thor Thorsen, Hanne Quist, John C Matese, Patrick O Brown, David Botstein, Per E Lonning, Anne-Lise Borresen-Dale
    posted to no-tag by evaf on 2008-06-11 11:30:15 as ** along with 3 people jfr frohike macavity1g
  • Diversity of gene expression in adenocarcinoma of the lung.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 24. (20 November 2001), pp. 13784-13789.
    by ME Garber, OG Troyanskaya, K Schluens, S Petersen, Z Thaesler, M Pacyna-Gengelbach, M van de Rijn, GD Rosen, CM Perou, RI Whyte, RB Altman, PO Brown, D Botstein, I Petersen
    posted to no-tag by evaf on 2008-06-11 11:28:29 as **
  • Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles.
    Lancet, Vol. 363, No. 9411. (6 March 2004), pp. 775-781.
    by MH Jones, C Virtanen, D Honjoh, T Miyoshi, Y Satoh, S Okumura, K Nakagawa, H Nomura, Y Ishikawa
    posted to no-tag by evaf on 2008-06-11 11:27:29 as read
  • Predicting hepatitis B virus-positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning.
    Nature medicine, Vol. 9, No. 4. (April 2003), pp. 416-423.
    by QH Ye, LX Qin, M Forgues, P He, JW Kim, AC Peng, R Simon, Y Li, AI Robles, Y Chen, ZC Ma, ZQ Wu, SL Ye, YK Liu, ZY Tang, XW Wang
    posted to microarray by evaf on 2008-06-11 10:05:24 as **
  • Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia.
    The New England journal of medicine, Vol. 350, No. 16. (15 April 2004), pp. 1605-1616.
    by L Bullinger, K Döhner, E Bair, S Fröhling, RF Schlenk, R Tibshirani, H Döhner, JR Pollack
    posted to microarray by evaf on 2008-06-11 10:00:28 as read
  • Variation in gene expression patterns in follicular lymphoma and the response to rituximab.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1926-1930.
    by SP Bohen, OG Troyanskaya, O Alter, R Warnke, D Botstein, PO Brown, R Levy
    posted to microarray by evaf on 2008-06-11 09:55:58 as read along with 1 person lhonigberg
  • Evolutionary patterns of non-coding RNAs
    Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369.
    by Athanasius F Bompfunewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J Prohaska
    posted to no-tag by evaf on 2006-06-05 09:40:03 as **** along with 3 people and 2 groups Eonwe ilh bsmagic Bioinformatics bioinplant
  • RNA secondary structures and their prediction
    Bulletin of Mathemetical Biology, Vol. 46 (1984), pp. 591-621.
    by Michael Zuker, David Sankoff
    posted to no-tag by evaf on 2006-01-16 14:38:35 as ** along with 2 people arcticrasta matriz
  • Predicting RNA structure using mutual information.
    Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59.
    by E Freyhult, V Moulton, P Gardner
    posted to bioinformatics rna structure by evaf on 2006-01-12 15:11:18 as read along with 4 people and 2 groups marcius eckart_bindewald eweaver arcticrasta BioinfoCIPF SGU-CIPF
  • Identity elements of tRNA(Thr) towards Saccharomyces cerevisiae threonyl-tRNA synthetase
    Nucleic Acids Res., Vol. 23, No. 15. (11 August 1995), pp. 2831-2836.
    by N Nameki
    posted to trna-trnalogo by evaf on 2005-05-02 15:53:07 as **
  • Overlapping nucleotide determinants for specific aminoacylation of RNA microhelices
    Science, Vol. 255, No. 5048. (28 February 1992), pp. 1121-1125.
    by C Francklyn, JP Shi, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:51:04 as **
  • Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution
    Biochemistry, Vol. 28, No. 17. (22 August 1989), pp. 6800-6804.
    by YM Hou, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:50:34 as **
  • A simple structural feature is a major determinant of the identity of a transfer RNA
    Nature, Vol. 333, No. 6169. (12 May 1988), pp. 140-145.
    by YM Hou, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:48:37 as ** along with 1 person LamBras
  • Structure in tRNA data
    Biochimie, Vol. 64, No. 6. (June 1982), pp. 387-397.
    by H Grosjean, RJ Cedergren, W Mckay
    posted to trna-trnalogo by evaf on 2005-05-02 15:47:04 as **
  • Identity elements of tRNA(Trp). Identification and evolutionary conservation
    J. Biol. Chem., Vol. 268, No. 13. (5 May 1993), pp. 9316-9322.
    by H Xue, W Shen, R Giege, JT Wong
    posted to trna-trnalogo by evaf on 2005-05-02 15:43:36 as **
  • Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide.
    (1999)
    by DM&DT Zuker
    edited by JB&B Barciszewski
    posted to rna secondary_structure by evaf on 2005-05-02 08:55:07 as ** along with 1 person guxiyou
  • Modelling 'evo-devo' with RNA.
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177.
    by W Fontana
    posted to rna by evaf on 2005-04-06 15:31:53 as ** along with 3 people rklancer alexisgallagher eckart_bindewald
  • RNA folding and unfolding.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379.
    by B Onoa, I Tinoco
    posted to rna rna_folding by evaf on 2005-04-06 15:29:06 as ** along with 6 people and 3 groups marcius arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
  • Reduced contact order and RNA folding rates.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1359-1365.
    by TR Sosnick, T Pan
    posted to rna rna_folding by evaf on 2005-04-06 15:25:44 as *** along with 2 people and 2 groups marcius emidio_capriotti BioinfoCIPF SGU-CIPF
  • RNA folding: models and perspectives.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316.
    by TR Sosnick, T Pan
    posted to fold rna rna_folding by evaf on 2005-04-06 15:25:08 as *** along with 3 people and 2 groups austin marcius Hosna BioinfoCIPF SGU-CIPF
  • Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315.
    by A Xayaphoummine, T Bucher, F Thalmann, H Isambert
    posted to pseudoknot rna secondary_structure by evaf on 2005-04-06 12:21:14 as *** along with 6 people and 3 groups austin marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
  • RNA molecules with structure dependent functions are uniquely folded.
    Nucleic Acids Res, Vol. 30, No. 16. (15 August 2002), pp. 3574-3582.
    by SY Le, K Zhang, JV Maizel
    posted to rna secondary_structure by evaf on 2005-04-06 06:45:11 as ****
  • Co-transcriptional folding is encoded within RNA genes.
    BMC Mol. Biol., Vol. 5, No. 1. (6 August 2004)
    by IM Meyer, I Miklos
    posted to rna by evaf on 2005-03-18 08:09:02 as **** along with 4 people and 3 groups marcius condon Hosna raylim beta BioinfoCIPF SGU-CIPF
  • Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling.
    BMC Bioinformatics, Vol. 6, No. 1. (10 March 2005), 50.
    by Eva Freyhult, Peteris Prusis, Maris Lapinsh, Jarl E Wikberg, Vincent Moulton, Mats G Gustafsson
    posted to chemometrics proteochemometrics by evaf on 2005-03-14 14:47:14 as read
  • Plasticity, evolvability, and modularity in RNA.
    J Exp Zool, Vol. 288, No. 3. (15 October 2000), pp. 242-283.
    by LW Ancel, W Fontana
    posted to rna secondary_structure by evaf on 2005-03-14 10:01:30 as read along with 1 person amorgan
  • Vienna RNA Secondary Structure Package
    posted to rna secondary_structure by evaf on 2005-03-11 06:49:41 as read
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res, Vol. 9, No. 1. (10 January 1981), pp. 133-148.
    by M Zuker, P Stiegler
    posted to rna secondary_structure by evaf on 2005-03-10 21:23:49 as ** along with 5 people and 2 groups marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
  • Prediction of RNA secondary structure by energy minimization.
    Methods Mol Biol, Vol. 25 (1994), pp. 267-294.
    by M Zuker
    posted to rna secondary_structure by evaf on 2005-03-10 21:23:45 as ** along with 1 person arcticrasta
  • The European ribosomal RNA database.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by J Wuyts, G Perrière, Y Van De Peer
    posted to database rna rrna by evaf on 2005-03-10 21:23:41 as **
  • Complete suboptimal folding of RNA and the stability of secondary structures.
    Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165.
    by S Wuchty, W Fontana, IL Hofacker, P Schuster
    posted to rna secondary_structure suboptimal by evaf on 2005-03-10 21:23:36 as read along with 1 person mtw
  • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution.
    Nucleic Acids Res, Vol. 27, No. 24. (15 December 1999), pp. 4816-4822.
    by C Workman, A Krogh
    posted to dinucleotide energy mrna rna shuffle by evaf on 2005-03-10 21:23:32 as **
  • The genome sequence of Schizosaccharomyces pombe.
    Nature, Vol. 415, No. 6874. (21 February 2002), pp. 871-880.
    by V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, J Sgouros, N Peat, J Hayles, S Baker, D Basham, S Bowman, K Brooks, D Brown, S Brown, T Chillingworth, C Churcher, M Collins, R Connor, A Cronin, P Davis, T Feltwell, A Fraser, S Gentles, A Goble, N Hamlin, D Harris, J Hidalgo, G Hodgson, S Holroyd, T Hornsby, S Howarth, EJ Huckle, S Hunt, K Jagels, K James, L Jones, M Jones, S Leather, S McDonald, J McLean, P Mooney, S Moule, K Mungall, L Murphy, D Niblett, C Odell, K Oliver, S O'Neil, D Pearson, MA Quail, E Rabbinowitsch, K Rutherford, S Rutter, D Saunders, K Seeger, S Sharp, J Skelton, M Simmonds, R Squares, S Squares, K Stevens, K Taylor, RG Taylor, A Tivey, S Walsh, T Warren, S Whitehead, J Woodward, G Volckaert, R Aert, J Robben, B Grymonprez, I Weltjens, E Vanstreels, M Rieger, M Schäfer, S Müller-Auer, C Gabel, M Fuchs, A Düsterhöft, C Fritzc, E Holzer, D Moestl, H Hilbert, K Borzym, I Langer, A Beck, H Lehrach, R Reinhardt, TM Pohl, P Eger, W Zimmermann, H Wedler, R Wambutt, B Purnelle, A Goffeau, E Cadieu, S Dréano, S Gloux, V Lelaure, S Mottier, F Galibert, SJ Aves, Z Xiang, C Hunt, K Moore, SM Hurst, M Lucas, M Rochet, C Gaillardin, VA Tallada, A Garzon, G Thode, RR Daga, L Cruzado, J Jimenez, M Sánchez, F del Rey, J Benito, A Domínguez, JL Revuelta, S Moreno, J Armstrong, SL Forsburg, L Cerutti, T Lowe, WR McCombie, I Paulsen, J Potashkin, GV Shpakovski, D Ussery, BG Barrell, P Nurse, L Cerrutti
    posted to genome rna yeast by evaf on 2005-03-10 21:23:28 as ** along with 1 person Cortel
  • Conserved RNA secondary structures in Picornaviridae genomes.
    Nucleic Acids Res, Vol. 29, No. 24. (15 December 2001), pp. 5079-5089.
    by C Witwer, S Rauscher, IL Hofacker, PF Stadler
    posted to rna secondary_structure virus by evaf on 2005-03-10 21:23:20 as ** along with 1 person ilh
  • Melanocortin receptors: ligands and proteochemometrics modeling.
    Ann N Y Acad Sci, Vol. 994 (June 2003), pp. 21-26.
    by JE Wikberg, F Mutulis, I Mutule, S Veiksina, M Lapinsh, R Petrovska, P Prusis
    posted to chemometrics proteochemometrics by evaf on 2005-03-10 21:23:15 as **
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to non-coding rna by evaf on 2005-03-10 21:23:10 as ** along with 9 people and 3 groups gangli dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh raylim tulip BioinfoCIPF SGU-CIPF
  • Evaluating the predictability of conformational switching in RNA.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1573-1582.
    by B Voss, C Meyer, R Giegerich
    posted to riboswitch rna by evaf on 2005-03-10 21:23:06 as **
  • Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.
    RNA, Vol. 9, No. 9. (September 2003), pp. 1084-1097.
    by AG Vitreschak, DA Rodionov, AA Mironov, MS Gelfand
    posted to regulatory_element rna by evaf on 2005-03-10 21:23:02 as **
  • Identification of 13 novel human modification guide RNAs.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6543-6551.
    by P Vitali, H Royo, H Seitz, JP Bachellerie, A Hüttenhofer, J Cavaillé
    posted to rna snorna by evaf on 2005-03-10 21:22:58 as ** along with 1 person mtagaya
  • The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.
    EMBO Rep, Vol. 1, No. 1. (July 2000), pp. 18-23.
    by G Varani, WH McClain
    posted to rna wobble by evaf on 2005-03-10 21:22:54 as **
  • Discovering regulatory elements in non-coding sequences by analysis of spaced dyads.
    Nucleic Acids Res, Vol. 28, No. 8. (15 April 2000), pp. 1808-1818.
    by J van Helden, AF Rios, J Collado-Vides
    posted to non-coding regulatory_element rna by evaf on 2005-03-10 21:22:50 as **
  • Improved parameters for prediction of RNA structure.
    Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 123-133.
    by DH Turner, N Sugimoto, JA Jaeger, CE Longfellow, SM Freier, R Kierzek
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:46 as **
  • RNA structure prediction.
    Annu Rev Biophys Biophys Chem, Vol. 17 (1988), pp. 167-192.
    by DH Turner, N Sugimoto
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:41 as **
  • The complete genome sequence of the gastric pathogen Helicobacter pylori.
    Nature, Vol. 388, No. 6642. (7 August 1997), pp. 539-547.
    by JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, RD Fleischmann, KA Ketchum, HP Klenk, S Gill, BA Dougherty, K Nelson, J Quackenbush, L Zhou, EF Kirkness, S Peterson, B Loftus, D Richardson, R Dodson, HG Khalak, A Glodek, K McKenney, LM Fitzegerald, N Lee, MD Adams, JC Venter
    posted to genome by evaf on 2005-03-10 21:22:37 as ** along with 2 people bjorns xingxu
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to alignment by evaf on 2005-03-10 21:22:33 as ** along with 22 people and 1 group newton1234 jmw greger_halltorp jshapiro mercaptan caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu biomedical-nlp
  • A GC-rich sequence within the 5' untranslated region of human basonuclin mRNA inhibits its translation.
    Gene, Vol. 237, No. 1. (3 September 1999), pp. 35-44.
    by W Tang, H Tseng
    posted to regulatory_element rna utr by evaf on 2005-03-10 21:22:29 as **
  • Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs.
    Bioessays, Vol. 26, No. 8. (August 2004), pp. 833-843.
    by M Suzuki, Y Hayashizaki
    posted to coding non-coding rna by evaf on 2005-03-10 21:22:25 as **
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