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emptyhbs drosophila [43 articles]

Neue Publikationen in emptyhbs Bibliothek eingetragen unter dem Bezeichner: drosophila. You can also see everyone's drosophila.
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
    posted to in-vivo_binding_sites drosophila cis_regulatory_evolution binding_sites_turnover by emptyhb on 2008-05-07 16:22:30 as ** along with 5 people and 2 groups adepace eukfn lusk maximilianh cisevol EisenLab cis-regulatory-evolution
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
    posted to drosophila cis_regulatory_evolution by emptyhb on 2008-05-06 21:33:36 as ** along with 2 people and 1 group operon cisevol cis-regulatory-evolution
  • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
    Genetics, Vol. 139, No. 2. (February 1995), pp. 1067-1076.
    by H Akashi
    posted to drosophila detecting_selection by emptyhb on 2008-05-05 14:50:59 as **
  • Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.
    Dev Biol (13 February 2008)
    by Thomas Gregor, Alistair P P McGregor, Eric F F Wieschaus
    posted to trans_elements drosophila cis_regulatory_evolution by emptyhb on 2008-04-30 02:30:46 as ** along with 1 person lusk
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to function_study even-skipped_enhancer drosophila cis_regulatory_evolution by emptyhb on 2008-04-28 03:07:14 as ** along with 4 people and 3 groups brant mimulus_99 blobbybirdman cisevol UH - Computational Biology cis-regulatory-evolution Myxo group
  • Delivery codes for fly transgenics
    Nature Genetics, Vol. 40, No. 4., pp. 383-384.
    by Thomas C Tubon, Jerry CP Yin
    posted to experimental_method drosophila by emptyhb on 2008-04-24 05:50:56 as **
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to cis_regulatory_evolution drosophila even-skipped_enhancer function_study by emptyhb on 2008-04-22 15:58:26 as ** along with 3 people and 2 groups brant adepace cisevol EisenLab cis-regulatory-evolution
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to drosophila even-skipped_enhancer transcriptional_regulation by emptyhb on 2008-04-10 00:52:18 as ** along with 4 people and 1 group imouthesmp mystery indigoviolet balicea EisenLab
  • High-resolution, high-throughput SNP mapping in Drosophila melanogaster
    Nature Methods, Vol. 5, No. 4. (09 March 2008), pp. 323-329.
    by Doris Chen, Annika Ahlford, Frank Schnorrer, Irene Kalchhauser, Michaela Fellner, Erika Viràgh, Istvàn Kiss, Ann-Christine Syvänen, Barry J Dickson
    posted to drosophila experimental_method news by emptyhb on 2008-04-01 07:21:26 as **
  • Molecular mechanisms of selector gene function and evolution
    Current Opinion in Genetics & Development, Vol. 12, No. 5. (1 October 2002), pp. 592-600.
    by Richard S Mann, Sean B Carroll
    posted to cis_regulatory_evolution drosophila review by emptyhb on 2008-04-01 06:35:56 as **
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
    posted to cis_regulatory_evolution drosophila even-skipped_enhancer function_study natural_selection by emptyhb on 2008-03-30 17:08:23 as ** along with 3 people and 1 group brant ranb cisevol cis-regulatory-evolution
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
    posted to cis_regulatory_evolution detecting_selection drosophila even-skipped_enhancer molecular_evolution by emptyhb on 2008-03-25 23:40:33 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
    posted to cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-03-25 23:01:47 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to cis_regulatory_elements drosophila motif_searching by emptyhb on 2008-03-24 21:22:51 as ** along with 5 people and 1 group indigoviolet dpollard dquest SeungjoonOh nklee EisenLab
  • Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae
    PLoS Biology, Vol. 4, No. 12. (1 November 2006), e386.
    by Sylvain Marcellini, Pat Simpson
    posted to cis_regulatory_evolution drosophila experimental_method phenotype by emptyhb on 2008-03-21 01:52:48 as ** along with 3 people and 1 group dpollard adepace emmahe EisenLab
  • Positioning adjacent pair-rule stripes in the posterior Drosophila embryo.
    Development, Vol. 120, No. 10. (October 1994), pp. 2945-2955.
    by JA Langeland, SF Attai, K Vorwerk, SB Carroll
    posted to cis_regulatory_elements drosophila experimental_method by emptyhb on 2008-03-19 18:24:49 as **
  • Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.
    PLoS Genet, Vol. 3, No. 11. (30 November 2007)
    by P Fontanillas, DL Hartl, M Reuter
    posted to drosophila molecular_evolution by emptyhb on 2008-03-07 03:45:56 as ** along with 1 person maximilianh
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to drosophila experimental_method in-vivo_binding_sites by emptyhb on 2008-03-05 21:16:56 as ** along with 4 people brant kengg maximilianh caseybrown
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
    by N Gompel, B Prud'homme, PJ Wittkopp, VA Kassner, SB Carroll
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila phenotype species_divergence by emptyhb on 2008-03-02 02:50:29 as ** along with 4 people and 2 groups dpollard emilyhare adepace cisevol EisenLab cis-regulatory-evolution
  • Short-range transcriptional repressors mediate both quenching and direct repression within complex loci in Drosophila.
    Genes Dev., Vol. 10, No. 6. (15 March 1996), pp. 700-710.
    by S Gray, M Levine
    posted to drosophila transcriptional_regulation by emptyhb on 2008-02-29 15:55:38 as **
  • Short-range repression permits multiple enhancers to function autonomously within a complex promoter.
    Genes Dev., Vol. 8, No. 15. (1 August 1994), pp. 1829-1838.
    by S Gray, P Szymanski, M Levine
    posted to dna-protein_interaction drosophila even-skipped_enhancer pattern_formation transcriptional_regulation by emptyhb on 2008-02-28 17:42:19 as **
  • The Drosophila even-skipped promoter is transcribed in a stage-specific manner in vitro and contains multiple, overlapping factor-binding sites.
    Mol. Cell. Biol., Vol. 10, No. 8. (1 August 1990), pp. 4334-4344.
    by D Read, T Nishigaki, JL Manley
    posted to cis_regulatory_elements drosophila even-skipped_enhancer by emptyhb on 2008-02-28 17:24:23 as **
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to cis_regulatory_evolution drosophila molecular_evolution by emptyhb on 2008-02-24 23:13:30 as ** along with 13 people and 4 groups operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 hpaces caseybrown urgi noor Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cis_regulatory_elements drosophila by emptyhb on 2008-02-24 21:48:51 as ** along with 7 people and 2 groups dpollard lp2 nklee maximilianh roys caseybrown barwil EisenLab cis-regulatory-evolution
  • notes Conservation of regulatory elements between two species of Drosophila.
    BMC Bioinformatics, Vol. 4 (20 November 2003)
    by E Emberly, N Rajewsky, ED Siggia
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-02-24 21:43:41 as *** along with 1 person and 1 group dquest Bioinformatics
  • Morphological evolution through multiple cis-regulatory mutations at a single gene
    Nature (15 July 2007)
    by Alistair P Mcgregor, Virginie Orgogozo, Isabelle Delon, Jennifer Zanet, Dayalan G Srinivasan, François Payre, David L Stern
    posted to cis_regulatory_evolution drosophila expression phenotype species_divergence by emptyhb on 2008-02-21 18:12:50 as ** along with 6 people and 2 groups dpollard djkt zwang Stew xingxu cisevol EisenLab cis-regulatory-evolution
  • Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila.
    Mol Biol Evol (23 July 2007)
    by Sònia Casillas, Antonio Barbadilla, Casey M M Bergman
    posted to drosophila molecular_evolution by emptyhb on 2008-02-15 22:45:28 as ** along with 6 people and 2 groups operon dpollard emilyhare Garamonfok Stew cisevol EisenLab cis-regulatory-evolution
  • Evolution of gene expression in the Drosophila melanogaster subgroup.
    Nat Genet, Vol. 33, No. 2. (February 2003), pp. 138-144.
    by SA Rifkin, J Kim, KP White
    posted to detecting_selection drosophila expression species_divergence by emptyhb on 2008-01-22 15:52:55 as ** along with 4 people and 1 group adepace eukfn emarker caseybrown EisenLab
  • Common pattern of evolution of gene expression level and protein sequence in Drosophila.
    Mol Biol Evol, Vol. 21, No. 7. (July 2004), pp. 1308-1317.
    by SV Nuzhdin, ML Wayne, KL Harmon, LM McIntyre
    posted to drosophila species_divergence transcriptional_regulation by emptyhb on 2008-01-22 15:40:03 as ** along with 3 people and 1 group bjorns RMGraze penka Nie
  • Site-specific transgenesis by Cre-mediated recombination in Drosophila
    Nature Methods, Vol. 2, No. 8. (21 July 2005), pp. 583-585.
    by Adam Oberstein, Adam Pare, Leah Kaplan, Stephen Small
    posted to drosophila experimental_method by emptyhb on 2008-01-22 02:40:49 as ** along with 1 person postrational
  • The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4960-4965.
    by A Ochoa-Espinosa, G Yucel, L Kaplan, A Pare, N Pura, A Oberstein, D Papatsenko, S Small
    posted to cooperative_binding cis_regulatory_elements drosophila pattern_formation by emptyhb on 2008-01-21 22:21:30 as ** along with 1 person and 1 group adepace EisenLab
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
    posted to drosophila pattern_formation species_divergence trans_elements by emptyhb on 2008-01-20 21:40:13 as ** along with 1 person balicea
  • Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.
    by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley
    posted to drosophila molecular_evolution species_divergence by emptyhb on 2008-01-20 16:53:21 as ** along with 2 people bpb dmc
  • Transcriptional Control in the Segmentation Gene Network of Drosophila
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e271.
    by Mark D Schroeder, Michael Pearce, John Fak, Hongqing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D Siggia, Ulrike Gaul
    posted to cis_regulatory_elements drosophila motif_searching pattern_formation transcriptional_regulation by emptyhb on 2008-01-19 22:49:02 as **** along with 5 people and 3 groups indigoviolet dpollard adepace wrowell dlmace EisenLab Cline_lab UH - Computational Biology
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to cis_regulatory_elements drosophila modeling_gene_network by emptyhb on 2008-01-18 06:17:50 as ** along with 10 people tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson roys pkharchenko meiklej jrest
  • Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
    Nat Genet (17 September 2006)
    by Hilde Janssens, Shuling Hou, Johannes Jaeger, Ah-Ram R Kim, Ekaterina Myasnikova, David Sharp, John Reinitz
    posted to cis_regulatory_elements drosophila even-skipped_enhancer modeling_gene_network by emptyhb on 2008-01-15 20:48:34 as ** along with 6 people and 2 groups okarsligil brant dpollard adepace allPowerde Stew Bioinformatics EisenLab
  • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
    Genome Res (2 June 2006)
    by Daniel L L Halligan, Peter D D Keightley
    posted to detecting_selection drosophila by emptyhb on 2008-01-14 22:22:34 as ** along with 5 people and 3 groups RMGraze dpollard penka jri cisevol EisenLab Nie cis-regulatory-evolution
  • Spatial regulation of microRNA gene expression in the Drosophila embryo.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15907-15911.
    by F Biemar, R Zinzen, M Ronshaugen, V Sementchenko, JR Manak, MS Levine
    posted to drosophila expression mirna by emptyhb on 2008-01-11 16:53:46 as ** along with 5 people and 1 group bootsy indigoviolet emilyhare mtagaya postrational EisenLab
  • Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array
    Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12763-12768.
    by Frederic Biemar, David A Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert J Manak, Michael S Levine
    posted to cis_regulatory_elements drosophila mirna pattern_formation by emptyhb on 2008-01-11 16:48:18 as *** along with 1 person and 1 group Stew EisenLab
  • Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution
    Evolution & Development, Vol. 3, No. 6. (2001), pp. 397-407.
    by Alistair P Mcgregor, Philip J Shaw, John M Hancock, Daniel Bopp, Monika Hediger, Naomi S Wratten, Gabriel A Dover
    posted to binding_sites_turnover cis_regulatory_elements drosophila by emptyhb on 2007-12-31 03:36:29 as **
  • Mechanism and Bicoid-dependent control of hairy stripe 7 expression in the posterior region of the Drosophila embryo.
    EMBO J, Vol. 16, No. 14. (16 July 1997), pp. 4403-4411.
    by A La Rosée, T Häder, H Taubert, R Rivera-Pomar, H Jäckle
    posted to cis_regulatory_elements drosophila function_study by emptyhb on 2007-12-20 21:33:19 as **
  • A two-step mode of stripe formation in the Drosophila blastoderm requires interactions among primary pair rule genes
    Mechanisms of Development, Vol. 45, No. 1. (January 1994), pp. 3-13.
    by Christine Hartmann, Heike Taubert, Herbert Jackle, Michael J Pankratz
    posted to cis_regulatory_elements drosophila function_study by emptyhb on 2007-12-20 18:04:18 as **
  • Constructing a Quantitative Spatio-temporal Atlas of Gene Expression in the Drosophila Blastoderm
    by CC Fowlkes
    posted to cis_regulatory_elements drosophila expression by emptyhb on 2007-12-18 20:01:39 as **
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