registrieren | anmelden | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

emptyhbs cis_regulatory_elements [44 articles]

Neue Publikationen in emptyhbs Bibliothek eingetragen unter dem Bezeichner: cis_regulatory_elements. You can also see everyone's cis_regulatory_elements.
  • BioSAVE: Display of scored annotation within a sequence context
    BMC Bioinformatics, Vol. 9 (20 March 2008), 157.
    by Richard F Pollock, Boris Adryan
    posted to software motif_searching cis_regulatory_elements by emptyhb on 2008-09-01 17:56:15 as ** along with 2 people jyuh dquest
  • [duplicate] Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
    Nat Genet (17 September 2006)
    by Hilde Janssens, Shuling Hou, Johannes Jaeger, Ah-Ram R Kim, Ekaterina Myasnikova, David Sharp, John Reinitz
    posted to cis_regulatory_elements drosophila even-skipped_enhancer modeling_gene_network by emptyhb on 2008-07-17 20:54:20 as **
  • Functional Analysis of Repressor Binding Sites in the iab-2 Regulatory Region of the abdominal-A Homeotic Gene
    Developmental Biology, Vol. 218, No. 1. (1 February 2000), pp. 38-52.
    by Mary J Shimell, Aidan J Peterson, John Burr, Jeffrey A Simon, Michael B O'Connor
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila experimental_method function_study by emptyhb on 2008-07-10 16:44:44 as **
  • Genes that control dorsoventral polarity affect gene expression along the anteroposterior axis of the Drosophila embryo.
    Development (Cambridge, England), Vol. 99, No. 3. (March 1987), pp. 327-332.
    by SB Carroll, GM Winslow, VJ Twombly, MP Scott
    posted to cis_regulatory_elements drosophila pattern_formation by emptyhb on 2008-05-20 15:48:30 as **
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to cis_regulatory_elements modeling_gene_network by emptyhb on 2008-05-16 00:34:33 as ** along with 3 people and 3 groups stajich pradiptaray isimpson EisenLab Berkeley Mycology Jarman Lab
  • notes Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
    posted to cis_regulatory_elements cis_regulatory_evolution review by emptyhb on 2008-04-14 05:25:41 as ***** along with 2 people olympos blobbybirdman
  • Control of stochasticity in eukaryotic gene expression.
    Science, Vol. 304, No. 5678. (18 June 2004), pp. 1811-1814.
    by JM Raser, EK O'Shea
    posted to cis_regulatory_elements noiserobustness transcriptional_regulation by emptyhb on 2008-04-10 00:49:19 as ** along with 5 people rklancer madhadron balabu mhucka margaritis
  • Quantitative specificity of the Mnt repressor.
    Journal of molecular biology, Vol. 271, No. 2. (15 August 1997), pp. 178-194.
    by DS Fields, Y He, AY Al-Uzri, GD Stormo
    posted to biophysics cis_regulatory_elements dna-protein_interaction by emptyhb on 2008-04-05 19:56:01 as **
  • Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e7.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to cis_regulatory_elements drosophila motif_searching by emptyhb on 2008-03-24 21:22:51 as ** along with 6 people and 1 group indigoviolet dpollard dquest SeungjoonOh nklee isimpson EisenLab
  • Precise physical models of protein-DNA interaction from high-throughput data
    PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506.
    by Justin B Kinney, Gasper Tkacik, Curtis G Callan
    posted to cis_regulatory_elements dna-protein_interaction motif_searching statistical_method by emptyhb on 2008-03-20 15:56:33 as ** along with 2 people aalibes zwang
  • Positioning adjacent pair-rule stripes in the posterior Drosophila embryo.
    Development, Vol. 120, No. 10. (October 1994), pp. 2945-2955.
    by JA Langeland, SF Attai, K Vorwerk, SB Carroll
    posted to cis_regulatory_elements drosophila experimental_method by emptyhb on 2008-03-19 18:24:49 as **
  • Methods for calculating the probabilities of finding patterns in sequences.
    Comput Appl Biosci, Vol. 5, No. 2. (April 1989), pp. 89-96.
    by R Staden
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-03-18 18:10:27 as ** along with 1 person sconlan
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
    by N Gompel, B Prud'homme, PJ Wittkopp, VA Kassner, SB Carroll
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila phenotype species_divergence by emptyhb on 2008-03-02 02:50:29 as ** along with 5 people and 2 groups dpollard emilyhare adepace cisevol pradiptaray EisenLab cis-regulatory-evolution
  • The Drosophila even-skipped promoter is transcribed in a stage-specific manner in vitro and contains multiple, overlapping factor-binding sites.
    Mol. Cell. Biol., Vol. 10, No. 8. (1 August 1990), pp. 4334-4344.
    by D Read, T Nishigaki, JL Manley
    posted to cis_regulatory_elements drosophila even-skipped_enhancer by emptyhb on 2008-02-28 17:24:23 as **
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to cis_regulatory_elements cis_regulatory_evolution motif_searching by emptyhb on 2008-02-27 06:32:09 as *** along with 8 people and 2 groups indigoviolet dpollard samal nickluscombe olympos bpcusack mariakmejia kcrawlik EisenLab EBI-regulation
  • Ultraconservation identifies a small subset of extremely constrained developmental enhancers.
    Nat Genet (6 January 2008)
    by Axel Visel, Shyam Prabhakar, Jennifer A A Akiyama, Malak Shoukry, Keith D D Lewis, Amy Holt, Ingrid Plajzer-Frick, Veena Afzal, Edward M M Rubin, Len A A Pennacchio
    posted to cis_regulatory_elements by emptyhb on 2008-02-26 03:36:27 as ** along with 5 people Stew maximilianh gjuggler bpcusack isimpson
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cis_regulatory_elements drosophila by emptyhb on 2008-02-24 21:48:51 as ** along with 7 people and 2 groups dpollard lp2 nklee maximilianh roys caseybrown barwil EisenLab cis-regulatory-evolution
  • notes Conservation of regulatory elements between two species of Drosophila.
    BMC Bioinformatics, Vol. 4 (20 November 2003)
    by E Emberly, N Rajewsky, ED Siggia
    posted to cis_regulatory_elements cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-02-24 21:43:41 as *** along with 1 person and 1 group dquest Bioinformatics
  • Systematic functional characterization of cis-regulatory motifs in human core promoters
    Genome Res. (6 February 2008), gr.6828808.
    by Saurabh Sinha, Adam S Adler, Yair Field, Howard Y Chang, Eran Segal
    posted to cis_regulatory_elements by emptyhb on 2008-02-18 05:01:04 as ** along with 7 people and 1 group ealloza lp2 cabbagezs idonaldson ihpark gracio isimpson Jarman Lab
  • Expression of a beta-globin gene is enhanced by remote SV40 DNA sequences.
    Cell, Vol. 27, No. 2 Pt 1. (December 1981), pp. 299-308.
    by J Banerji, S Rusconi, W Schaffner
    posted to cis_regulatory_elements by emptyhb on 2008-02-17 20:09:29 as **
  • Extensive low-affinity transcriptional interactions in the yeast genome.
    Genome Res (29 June 2006)
    by Amos Tanay
    posted to cis_regulatory_elements motif_searching statistical_method by emptyhb on 2008-01-21 23:32:43 as ** along with 6 people and 1 group devin indigoviolet dpollard balicea koller lusk EisenLab
  • The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila.
    Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4960-4965.
    by A Ochoa-Espinosa, G Yucel, L Kaplan, A Pare, N Pura, A Oberstein, D Papatsenko, S Small
    posted to cis_regulatory_elements drosophila pattern_formation cooperative_binding by emptyhb on 2008-01-21 22:21:30 as ** along with 1 person and 1 group adepace EisenLab
  • Transcriptional Control in the Segmentation Gene Network of Drosophila
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e271.
    by Mark D Schroeder, Michael Pearce, John Fak, Hongqing Fan, Ulrich Unnerstall, Eldon Emberly, Nikolaus Rajewsky, Eric D Siggia, Ulrike Gaul
    posted to cis_regulatory_elements drosophila motif_searching pattern_formation transcriptional_regulation by emptyhb on 2008-01-19 22:49:02 as **** along with 7 people and 3 groups indigoviolet dpollard adepace wrowell dlmace pradiptaray balicea EisenLab Cline_lab UH - Computational Biology
  • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 757-762.
    by BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, GM Rubin, MB Eisen
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-01-18 06:26:13 as ** along with 3 people and 1 group indigoviolet Stew csdhwang EisenLab
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to cis_regulatory_elements drosophila modeling_gene_network by emptyhb on 2008-01-18 06:17:50 as ** along with 13 people dakelley tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson roys pkharchenko meiklej jrest tresch siebert
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to cis_regulatory_elements experimental_method by emptyhb on 2008-01-17 22:46:15 as ** along with 8 people and 2 groups jjray dpollard emilyhare adepace aswin skoch3 blobbybirdman brant EisenLab Koch_Lab
  • Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
    Nat Genet (17 September 2006)
    by Hilde Janssens, Shuling Hou, Johannes Jaeger, Ah-Ram R Kim, Ekaterina Myasnikova, David Sharp, John Reinitz
    posted to cis_regulatory_elements drosophila even-skipped_enhancer modeling_gene_network by emptyhb on 2008-01-15 20:48:34 as ** along with 6 people and 2 groups okarsligil brant dpollard adepace allPowerde Stew Bioinformatics EisenLab
  • Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array
    Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12763-12768.
    by Frederic Biemar, David A Nix, Jessica Piel, Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert J Manak, Michael S Levine
    posted to cis_regulatory_elements drosophila mirna pattern_formation by emptyhb on 2008-01-11 16:48:18 as *** along with 1 person and 1 group Stew EisenLab
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579.
    by AE Kel, E Gössling, I Reuter, E Cheremushkin, OV Kel-Margoulis, E Wingender
    posted to cis_regulatory_elements motif_searching by emptyhb on 2008-01-08 16:42:54 as ** along with 6 people setar aprasad reidy nklee danish_punter maximilianh
  • Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals
    Nature, Vol. aop, No. current. (27 February 2005)
    by Xiaohui Xie, Jun Lu, EJ Kulbokas, Todd R Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S Lander, Manolis Kellis
    posted to cis_regulatory_elements by emptyhb on 2008-01-06 16:20:31 as ** along with 22 people and 4 groups snuppepuppan BioGeek briann jtextori tmmurali okarsligil jfr balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
  • A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome.
    Nucleic Acids Res, Vol. 34, No. 8. (2006), pp. 2238-2246.
    by C Zhang, Z Xuan, S Otto, JR Hover, SR McCorkle, G Mandel, MQ Zhang
    posted to cis_regulatory_elements by emptyhb on 2008-01-06 14:44:54 as ** along with 3 people and 1 group gpalidwor maximilianh Auger Dead 60's
  • An overview of the structures of protein-DNA complexes.
    Genome Biol, Vol. 1, No. 1. (2000)
    by NM Luscombe, SE Austin, HM Berman, JM Thornton
    posted to cis_regulatory_elements dna-protein_interaction review by emptyhb on 2008-01-01 20:29:41 as ** along with 4 people and 1 group kaarsinogen indigoviolet medic0747 jonsta247 EisenLab
  • notes Evaluating the role of natural selection in the evolution of gene regulation
    Heredity, Vol. aop, No. current.
    by JC Fay, PJ Wittkopp
    posted to cis_regulatory_elements detecting_selection review transcriptional_regulation by emptyhb on 2007-12-31 18:07:55 as **** along with 4 people and 2 groups dpollard djkt cisevol gjuggler EisenLab cis-regulatory-evolution
  • Detecting natural selection on cis-regulatory DNA
    Genetica, Vol. 129, No. 1. (January 2007), pp. 7-18.
    by Hahn, Matthew
    posted to cis_regulatory_elements detecting_selection population_genetics_modeling by emptyhb on 2007-12-31 17:57:54 as ** along with 2 people and 2 groups adepace cisevol EisenLab cis-regulatory-evolution
  • Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution
    Evolution & Development, Vol. 3, No. 6. (2001), pp. 397-407.
    by Alistair P Mcgregor, Philip J Shaw, John M Hancock, Daniel Bopp, Monika Hediger, Naomi S Wratten, Gabriel A Dover
    posted to binding_sites_turnover cis_regulatory_elements drosophila by emptyhb on 2007-12-31 03:36:29 as **
  • Mechanism and Bicoid-dependent control of hairy stripe 7 expression in the posterior region of the Drosophila embryo.
    EMBO J, Vol. 16, No. 14. (16 July 1997), pp. 4403-4411.
    by A La Rosée, T Häder, H Taubert, R Rivera-Pomar, H Jäckle
    posted to cis_regulatory_elements drosophila function_study by emptyhb on 2007-12-20 21:33:19 as **
  • A two-step mode of stripe formation in the Drosophila blastoderm requires interactions among primary pair rule genes
    Mechanisms of Development, Vol. 45, No. 1. (January 1994), pp. 3-13.
    by Christine Hartmann, Heike Taubert, Herbert Jackle, Michael J Pankratz
    posted to cis_regulatory_elements drosophila function_study by emptyhb on 2007-12-20 18:04:18 as **
  • Constructing a Quantitative Spatio-temporal Atlas of Gene Expression in the Drosophila Blastoderm
    by CC Fowlkes
    posted to cis_regulatory_elements drosophila expression by emptyhb on 2007-12-18 20:01:39 as **
  • Sequence-specific DNA-binding activities of the gap proteins encoded by hunchback and Kruppel in Drosophila
    Nature, Vol. 341, No. 6240. (1989), pp. 331-335.
    by Dusan Stanojevic, Timothy Hoey, Michael Levine
    posted to cis_regulatory_elements even-skipped_enhancer function_study by emptyhb on 2007-12-15 22:34:38 as **
  • Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity.
    Science (23 March 2006)
    by Shannon Fisher, Elizabeth A A Grice, Ryan M M Vinton, Seneca L L Bessling, Andrew S S McCallion
    posted to cis_regulatory_elements function_study by emptyhb on 2007-12-14 16:32:23 as ** along with 5 people and 3 groups aprasad adepace nickluscombe maximilianh cisevol EisenLab EBI-regulation cis-regulatory-evolution
  • Evolution of functionally conserved enhancers can be accelerated in large populations: a population-genetic model.
    Proc Biol Sci, Vol. 269, No. 1494. (7 May 2002), pp. 953-960.
    by AJ Carter, GP Wagner
    posted to binding_sites_turnover cis_regulatory_elements population_genetics_modeling by emptyhb on 2007-12-11 20:55:48 as *** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • notes Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Conservation and Turnover
    Mol Biol Evol, Vol. 19, No. 7. (1 July 2002), pp. 1114-1121.
    by Emmanouil T Dermitzakis, Andrew G Clark
    posted to binding_sites_turnover cis_regulatory_elements by emptyhb on 2007-12-09 16:53:51 as ***** along with 3 people and 2 groups adepace cisevol xili03 EisenLab cis-regulatory-evolution
  • Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e304.
    by Richard J White, Qing Nie, Arthur D Lander, Thomas F Schilling
    posted to cis_regulatory_elements function_study by emptyhb on 2007-12-08 06:24:06 as **
  • Adaptive Gene Expression Divergence Inferred from Population Genomics
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e187.
    by Alisha K Holloway, Mara K Lawniczak, Jason G Mezey, David J Begun, Corbin D Jones
    posted to cis_regulatory_elements expression species_divergence by emptyhb on 2007-11-28 21:18:10 as ** along with 5 people brant Garamonfok xingxu caseybrown sb_journal_club
    • Bemerkung: Sie können diese Seite wie folgt zitieren: http://www.citeulike.org/user/emptyhb/tag/cis_regulatory_elements

    RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.