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emptyhbs library [128 articles]

Neue Artikel in emptyhbs Bibliothek.
  • Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
    BMC Bioinformatics, Vol. 7 (14 August 2006), 376.
    by Daniel A Pollard, Alan M Moses, Venky N Iyer, Michael B Eisen
    posted to cis_regulatory_evolution by emptyhb on 2008-05-10 22:02:25 as ** along with 6 people and 2 groups aprasad dpollard lusk Garamonfok lilou cisevol EisenLab cis-regulatory-evolution
  • Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors.
    Genome Res (5 July 2007)
    by Daryi Wang, Huang-Mo M Sung, Tzi-Yuan Y Wang, Chih-Jen J Huang, Peggy Yang, Tiffany Chang, Yang-Chao C Wang, Da-Lun L Tseng, Jen-Pey P Wu, Tso-Ching C Lee, Ming-Che C Shih, Wen-Hsiung H Li
    posted to transcriptional_regulation expression by emptyhb on 2008-05-10 21:56:58 as ** along with 4 people and 3 groups dpollard jwestbrook emarker cisevol EisenLab King_Lab cis-regulatory-evolution
  • Large-scale turnover of functional transcription factor binding sites in Drosophila.
    PLoS Comput Biol, Vol. 2, No. 10. (October 2006)
    by AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
    posted to in-vivo_binding_sites drosophila cis_regulatory_evolution binding_sites_turnover by emptyhb on 2008-05-07 16:22:30 as ** along with 5 people and 2 groups adepace eukfn lusk maximilianh cisevol EisenLab cis-regulatory-evolution
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to detecting_selection cis_regulatory_evolution by emptyhb on 2008-05-06 23:31:33 as ** along with 6 people and 2 groups briann dpollard adepace lusk nklee cisevol EisenLab cis-regulatory-evolution
  • Sequence turnover and tandem repeats in cis-regulatory modules in drosophila.
    Mol Biol Evol, Vol. 22, No. 4. (April 2005), pp. 874-885.
    by S Sinha, ED Siggia
    posted to drosophila cis_regulatory_evolution by emptyhb on 2008-05-06 21:33:36 as ** along with 2 people and 1 group operon cisevol cis-regulatory-evolution
  • Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.
    Genetics, Vol. 139, No. 2. (February 1995), pp. 1067-1076.
    by H Akashi
    posted to drosophila detecting_selection by emptyhb on 2008-05-05 14:50:59 as **
  • Gene Regulation in the Third Dimension
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1793-1794.
    by Job Dekker
    posted to transcriptional_regulation by emptyhb on 2008-05-04 21:35:40 as ** along with 8 people and 1 group operon AbnerCYH ealloza biomcgary sunhwan dlobo lambda Haze GEB
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
    posted to review cis_regulatory_evolution by emptyhb on 2008-05-04 03:12:00 as ** along with 5 people and 2 groups indigoviolet dpollard adepace emmahe cisevol EisenLab cis-regulatory-evolution
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to transcriptional_regulation review cis_regulatory_evolution by emptyhb on 2008-05-04 02:31:57 as ** along with 7 people and 5 groups ana dpollard adepace nickluscombe anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • The evolutionary significance of cis-regulatory mutations
    Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.
    by Gregory A Wray
    posted to review cis_regulatory_evolution by emptyhb on 2008-05-04 02:30:59 as ** along with 6 people and 4 groups brant dpollard dchughes lusk mimulus_99 cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Chromatin decouples promoter threshold from dynamic range
    Nature (16 April 2008)
    by Felix H Lam, David J Steger, Erin K O’shea
    posted to transcriptional_regulation experimental_method epigenetics basic_cell_machinary by emptyhb on 2008-05-03 15:36:45 as ** along with 1 person jjray
  • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale
    Nature Genetics, Vol. 38, No. 12. (05 November 2006), pp. 1406-1412.
    by Christopher D Herring, Anu Raghunathan, Christiane Honisch, Trina Patel, Kenyon M Applebee, Andrew R Joyce, Thomas J Albert, Frederick R Blattner, Dirk van den Boom, Charles R Cantor, Bernhard
    posted to natural_selection by emptyhb on 2008-05-02 21:47:45 as ** along with 3 people alexl dylan77 hevol
  • Molecular drive: a cohesive mode of species evolution
    Nature, Vol. 299, No. 5879. (1982), pp. 111-117.
    by Gabriel Dover
    posted to natural_selection molecular_evolution by emptyhb on 2008-05-02 15:40:55 as **
  • Functional characterization of variations on regulatory motifs.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by L Michal, O Mizrahi-Man, Y Pilpel
    posted to transcriptional_regulation modeling_gene_network by emptyhb on 2008-05-02 04:10:47 as **
  • Population Genetics of Polymorphism and Divergence
    Genetics, Vol. 132, No. 4. (1 December 1992), pp. 1161-1176.
    by SA Sawyer, DL Hartl
    posted to population_genetics_modeling by emptyhb on 2008-05-01 00:41:23 as ** along with 2 people bpb djkt
  • Possibility of extensive neutral evolution under stabilizing selection with special reference to nonrandom usage of synonymous codons.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 78, No. 9. (September 1981), pp. 5773-5777.
    by M Kimura
    posted to population_genetics_modeling cis_regulatory_evolution by emptyhb on 2008-05-01 00:22:32 as **
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to statistical_method population_genetics_modeling cis_regulatory_evolution by emptyhb on 2008-05-01 00:12:23 as ** along with 4 people and 2 groups kaarsinogen dpollard lusk cisevol EisenLab cis-regulatory-evolution
  • Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8591-8596.
    by JP Balhoff, GA Wray
    posted to cis_regulatory_evolution by emptyhb on 2008-04-30 21:38:36 as ** along with 2 people and 2 groups adepace cisevol EisenLab cis-regulatory-evolution
  • Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos.
    Dev Biol (13 February 2008)
    by Thomas Gregor, Alistair P P McGregor, Eric F F Wieschaus
    posted to trans_elements drosophila cis_regulatory_evolution by emptyhb on 2008-04-30 02:30:46 as ** along with 1 person lusk
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to function_study even-skipped_enhancer drosophila cis_regulatory_evolution by emptyhb on 2008-04-28 03:07:14 as ** along with 4 people and 3 groups brant mimulus_99 blobbybirdman cisevol UH - Computational Biology cis-regulatory-evolution Myxo group
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to news by emptyhb on 2008-04-24 05:53:33 as ** along with 3 people and 1 group caseybrown smgomez ptrobajo GomezLab
  • Delivery codes for fly transgenics
    Nature Genetics, Vol. 40, No. 4., pp. 383-384.
    by Thomas C Tubon, Jerry CP Yin
    posted to experimental_method drosophila by emptyhb on 2008-04-24 05:50:56 as **
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to cis_regulatory_evolution drosophila even-skipped_enhancer function_study by emptyhb on 2008-04-22 15:58:26 as ** along with 3 people and 2 groups brant adepace cisevol EisenLab cis-regulatory-evolution
  • notes Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.
    Developmental biology, Vol. 315, No. 2. (15 March 2008), pp. 567-578.
    by J Walters, E Binkley, R Haygood, LA Romano
    posted to cis_regulatory_evolution detecting_selection by emptyhb on 2008-04-18 02:36:40 as **
  • The birth and death of microRNA genes in Drosophila.
    Nat Genet (17 February 2008)
    by Jian Lu, Yang Shen, Qingfa Wu, Supriya Kumar, Bin He, Suhua Shi, Richard W W Carthew, San Ming M Wang, Chung-I I Wu
    posted to mirna by emptyhb on 2008-04-17 17:24:45 as ** along with 5 people and 1 group stajich djkt bootsy cellison megraw Berkeley Mycology
  • A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters.
    Trends in genetics : TIG, Vol. 19, No. 9. (September 2003), pp. 476-479.
    by G Mainguy, PM In der Rieden, E Berezikov, JM Woltering, RH Plasterk, AJ Durston
    posted to cis_regulatory_evolution by emptyhb on 2008-04-14 05:43:34 as **
  • Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15666-15669.
    by S Anand, WC Wang, DR Powell, SA Bolanowski, J Zhang, C Ledje, AB Pawashe, CT Amemiya, CS Shashikant
    posted to cis_regulatory_evolution function_study by emptyhb on 2008-04-14 05:35:04 as **
  • notes Comparative genomics at the vertebrate extremes.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465.
    by D Boffelli, MA Nobrega, EM Rubin
    posted to cis_regulatory_elements cis_regulatory_evolution review by emptyhb on 2008-04-14 05:25:41 as ***** along with 2 people olympos blobbybirdman
  • The effects of selection against spurious transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 6. (June 2003), pp. 901-906.
    by MW Hahn, JE Stajich, GA Wray
    posted to cis_regulatory_evolution by emptyhb on 2008-04-12 21:19:28 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Evidence for two modes of cooperative DNA binding in vivo that do not involve direct protein-protein interactions.
    Current biology : CB, Vol. 8, No. 8. (9 April 1998), pp. 452-458.
    by S Vashee, K Melcher, WV Ding, SA Johnston, T Kodadek
    posted to cooperative_binding by emptyhb on 2008-04-10 00:55:39 as **
  • Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 37. (13 September 2005), pp. 13176-13181.
    by D Lebrecht, M Foehr, E Smith, FJ Lopes, CE Vanario-Alonso, J Reinitz, DS Burz, SD Hanes
    posted to cooperative_binding by emptyhb on 2008-04-10 00:54:35 as **
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo.
    Curr Biol, Vol. 15, No. 21. (8 November 2005), pp. 1888-1898.
    by O Crauk, N Dostatni
    posted to drosophila even-skipped_enhancer transcriptional_regulation by emptyhb on 2008-04-10 00:52:18 as ** along with 4 people and 1 group imouthesmp mystery indigoviolet balicea EisenLab
  • Control of stochasticity in eukaryotic gene expression.
    Science, Vol. 304, No. 5678. (18 June 2004), pp. 1811-1814.
    by JM Raser, EK O'Shea
    posted to cis_regulatory_elements noiserobustness transcriptional_regulation by emptyhb on 2008-04-10 00:49:19 as ** along with 5 people rklancer madhadron balabu mhucka margaritis
  • A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos.
    The EMBO journal, Vol. 18, No. 6. (15 March 1999), pp. 1598-1608.
    by A Carr, MD Biggin
    posted to dna-protein_interaction in-vivo_binding_sites by emptyhb on 2008-04-10 00:46:32 as **
  • Additivity in protein-DNA interactions: how good an approximation is it?
    Nucleic Acids Res, Vol. 30, No. 20. (15 October 2002), pp. 4442-4451.
    by PV Benos, ML Bulyk, GD Stormo
    posted to biophysics dna-protein_interaction by emptyhb on 2008-04-07 06:59:56 as ** along with 2 people medic0747 yevishere
  • Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
    Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331.
    by Sonali Mukherjee, Michael F Berger, Ghil Jona, Xun S Wang, Dale Muzzey, Michael Snyder, Richard A Young, Martha L Bulyk
    posted to biophysics dna-protein_interaction in-vivo_binding_sites by emptyhb on 2008-04-05 23:00:57 as *** along with 4 people johncumbers olympos nklee yevishere
  • Quantitative specificity of the Mnt repressor.
    Journal of molecular biology, Vol. 271, No. 2. (15 August 1997), pp. 178-194.
    by DS Fields, Y He, AY Al-Uzri, GD Stormo
    posted to biophysics cis_regulatory_elements dna-protein_interaction by emptyhb on 2008-04-05 19:56:01 as **
  • Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
    Science, Vol. 309, No. 5736. (05 August 2005), pp. 938-940.
    by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark Mcclellan, Judith Berman, Naama Barkai
    posted to cis_regulatory_evolution species_divergence transcriptional_regulation by emptyhb on 2008-04-05 19:55:05 as **** along with 7 people and 3 groups aalibes monod arve marcius adepace entropy janek04 EisenLab BioinfoCIPF SGU-CIPF
  • Clinical value and measurement of specific IgE
    Clinical Biochemistry, Vol. 36, No. 6. (September 2003), pp. 453-469.
    by Mario Plebani
    posted to allergy by emptyhb on 2008-04-05 04:39:15 as **
  • High-resolution, high-throughput SNP mapping in Drosophila melanogaster
    Nature Methods, Vol. 5, No. 4. (09 March 2008), pp. 323-329.
    by Doris Chen, Annika Ahlford, Frank Schnorrer, Irene Kalchhauser, Michaela Fellner, Erika Viràgh, Istvàn Kiss, Ann-Christine Syvänen, Barry J Dickson
    posted to drosophila experimental_method news by emptyhb on 2008-04-01 07:21:26 as **
  • Multilevel Regulation of Gene Expression by MicroRNAs
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1789-1790.
    by Eugene V Makeyev, Tom Maniatis
    posted to mirna transcriptional_regulation by emptyhb on 2008-04-01 07:19:27 as ** along with 3 people and 1 group giovenko ealloza heliopais microRNA
  • Gene Regulation by Transcription Factors and MicroRNAs
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1785-1786.
    by Oliver Hobert
    posted to mirna review transcriptional_regulation by emptyhb on 2008-04-01 07:19:00 as **** along with 6 people and 1 group bootsy ealloza zwang biomcgary heliopais maralena microRNA
  • Molecular mechanisms of selector gene function and evolution
    Current Opinion in Genetics & Development, Vol. 12, No. 5. (1 October 2002), pp. 592-600.
    by Richard S Mann, Sean B Carroll
    posted to cis_regulatory_evolution drosophila review by emptyhb on 2008-04-01 06:35:56 as **
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
    posted to cis_regulatory_evolution drosophila even-skipped_enhancer function_study natural_selection by emptyhb on 2008-03-30 17:08:23 as ** along with 3 people and 1 group brant ranb cisevol cis-regulatory-evolution
  • Evidence for widespread degradation of gene control regions in hominid genomes.
    PLoS Biol, Vol. 3, No. 2. (February 2005)
    by PD Keightley, MJ Lercher, A Eyre-Walker
    posted to cis_regulatory_evolution by emptyhb on 2008-03-30 15:07:37 as ** along with 3 people and 1 group Garamonfok cisevol gjuggler cis-regulatory-evolution
  • Evolution of Character Displacement in Darwin's Finches
    Science, Vol. 313, No. 5784. (14 July 2006), pp. 224-226.
    by Peter R Grant, Rosemary B Grant
    posted to natural_selection by emptyhb on 2008-03-27 23:56:48 as ** along with 2 people and 2 groups emilyhare cmm EisenLab FAB-lab
  • Evolutionary dynamics of the enhancer region of even-skipped in Drosophila.
    Mol Biol Evol, Vol. 12, No. 6. (November 1995), pp. 1002-1011.
    by MZ Ludwig, M Kreitman
    posted to cis_regulatory_evolution detecting_selection drosophila even-skipped_enhancer molecular_evolution by emptyhb on 2008-03-25 23:40:33 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
    posted to cis_regulatory_evolution drosophila motif_searching by emptyhb on 2008-03-25 23:01:47 as ** along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Conservation of Pax 6 function and upstream activation by Notch signaling in eye development of frogs and flies
    Proceedings of the National Academy of Sciences, Vol. 99, No. 4. (19 February 2002), pp. 2020-2025.
    by Yasuko Onuma, Shuji Takahashi, Makoto Asashima, Shoichiro Kurata, Walter J Gehring
    posted to no-tag by emptyhb on 2008-03-25 20:12:17 as ** along with 2 people lisa1 adamsdi
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to cis_regulatory_evolution review by emptyhb on 2008-03-25 18:03:23 as ** along with 3 people and 2 groups dpollard blobbybirdman cisevol EisenLab cis-regulatory-evolution
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