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eallozas microarray [88 articles]

Neue Publikationen in eallozas Bibliothek eingetragen unter dem Bezeichner: microarray. You can also see everyone's microarray.
  • Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data.
    Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880.
    by H Li, M Zhan
    posted to transcription_factor prediction microarray interaction by ealloza on 2008-09-09 14:44:58 as ** along with 3 people jfr icecrown m9array
  • MicroRNA Expression and Identification of Putative miRNA Targets in Ovarian Cancer
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2436.
    by Neetu Dahiya, Cheryl A Sherman-Baust, Tian-Li Wang, Ben Davidson, Ie-Ming Shih, Yongqing Zhang, William Wood, Kevin G Becker, Patrice J Morin
    posted to cancer expression microarray microrna target by ealloza on 2008-06-24 11:25:02 as ** along with 2 people jfr maralena
  • A framework for the informed normalization of printed microarrays
    South African Journal of Science, Vol. 103, No. 9 & 10. (2007), pp. 381-390.
    by Johan Van Heerden, Sally-Ann Walford, Arthur Shen, Nicola Illing
    posted to expression microarray normalization review by ealloza on 2008-06-05 14:18:55 as ****
  • MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype
    Genome Biology, Vol. 8 (08 October 2007), R214.
    by Cherie Blenkiron, Leonard D Goldstein, Natalie P Thorne, Inmaculada Spiteri, Suet-Feung Chin, Mark J Dunning, Nuno L Barbosa-Morais, Andrew E Teschendorff, Andrew R Green, Ian O Ellis, Simon Tavare, Carlos Caldas, Eric A Miska
    posted to breast cancer expression human microarray microrna by ealloza on 2008-05-12 12:31:58 as ***** along with 3 people and 1 group jfr heliopais giovenko microRNA
  • Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896.
    by Hyunju Lee, Sek W Kong, Peter J Park
    posted to aberration cancer copy_number expression microarray pathway by ealloza on 2008-03-26 12:56:52 as **** along with 5 people jcaddy barriot ptrobajo frohike srp33
  • Epstein-Barr virus latent membrane protein 1 induces cellular MicroRNA miR-146a, a modulator of lymphocyte signaling pathways.
    J Virol, Vol. 82, No. 4. (February 2008), pp. 1946-1958.
    by JE Cameron, Q Yin, C Fewell, M Lacey, J McBride, X Wang, Z Lin, BC Schaefer, EK Flemington
    posted to ebv expression microarray microrna pathway virus by ealloza on 2008-03-11 14:58:19 as ** along with 1 person bootsy
  • EBV MicroRNAs in Primary Lymphomas and Targeting of CXCL-11 by ebv-mir-BHRF1-3
    Cancer Res, Vol. 68, No. 5. (1 March 2008), pp. 1436-1442.
    by Tianli Xia, Andrea O'Hara, Iguaracyra Araujo, Jose Barreto, Eny Carvalho, Jose B Sapucaia, Juan C Ramos, Estela Luz, Celia Pedroso, Michele Manrique, Ngoc L Toomey, Carlos Brites, Dirk P Dittmer, William J Harrington
    posted to cancer ebv expression human microarray microrna virus by ealloza on 2008-03-06 10:10:06 as ****
  • GlobalANCOVA: exploration and assessment of gene group effects
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 78-85.
    by Manuela Hummel, Reinhard Meister, Ulrich Mansmann
    posted to algorithm block expression microarray by ealloza on 2007-12-19 14:49:28 as ** along with 2 people jyuh heliopais
  • MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia.
    Proc Natl Acad Sci U S A (4 December 2007)
    by Shuangli Mi, Jun Lu, Miao Sun, Zejuan Li, Hao Zhang, Mary Beth B Neilly, Yungui Wang, Zhijian Qian, Jie Jin, Yanming Zhang, Stefan K K Bohlander, Michelle M M Le Beau, Richard A A Larson, Todd R R Golub, Janet D D Rowley, Jianjun Chen
    posted to cancer expression microarray microrna signature by ealloza on 2007-12-12 11:17:26 as *** along with 4 people frohike tmmurali Alexander_Kanitz bootsy
  • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.
    RNA, Vol. 11, No. 3. (March 2005), pp. 241-247.
    by S Baskerville, DP Bartel
    posted to block coexpression expression microarray microrna by ealloza on 2007-11-26 12:53:09 as read along with 5 people and 1 group mtagaya lp2 heliopais maralena jfr microRNA
  • Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
    BMC Bioinformatics, Vol. 8 (17 November 2007), 453.
    by Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong H Jung
    posted to functional_annotation gene_set_analysis microarray coherence expression by ealloza on 2007-11-19 12:21:28 as ** along with 2 people jfr heliopais
  • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    Nature, Vol. aop, No. current. (30 January 2005)
    by Lee P Lim, Nelson C Lau, Philip Garrett-Engele, Andrew Grimson, Janell M Schelter, John Castle, David P Bartel, Peter S Linsley, Jason M Johnson
    posted to expression microarray microrna target by ealloza on 2007-11-13 16:44:32 as read along with 16 people and 5 groups giovenko jyuh jtextori sanjeevpillai jfr balicea tabu mtagaya neveaire cgessmu skoch koller lp2 heliopais maralena caseybrown Biostatistics Computational-Genomics Bioinformatics Neuroscience microRNA
  • notes DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to database expression functional_annotation microarray by ealloza on 2007-11-05 17:30:43 as *** along with 4 people and 1 group jyuh jfr barriot hpaces BioinfoCIPF
  • notes Identification of aberrant chromosomal regions from gene expression microarray studies applied to human breast cancer
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2273-2280.
    by Andreas Buness, Ruprecht Kuner, Markus Ruschhaupt, Annemarie Poustka, Holger Sultmann, Achim Tresch
    posted to aberration algorithm amplification cancer chromosome expression human meta_analysis microarray by ealloza on 2007-09-11 11:07:15 as read along with 2 people and 1 group jfr rdiaz BioinfoCIPF
  • Assessing the Significance of Conserved Genomic Aberrations Using High Resolution Genomic Microarrays
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e143.
    by Mitchell Guttman, Carolyn Mies, Katarzyna Dudycz-Sulicz, Sharon J Diskin, Don A Baldwin, Christian J Stoeckert, Gregory R Grant
    posted to aberration cancer conservation microarray by ealloza on 2007-08-27 10:25:18 as read along with 3 people and 2 groups jfr rdiaz zwang Bioinformatics BioinfoCIPF
  • Functional profiling and gene expression analysis of chromosomal copy number alterations.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 432-435.
    by L Conde, D Montaner, J Burguet-Castell, J Tárraga, F Al-Shahrour, J Dopazo
    posted to cgh chromosome copy_number expression microarray by ealloza on 2007-08-09 12:37:48 as read along with 1 person and 1 group jfr BioinfoCIPF
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to applet expression gene_set_analysis microarray by ealloza on 2007-08-07 10:52:49 as read along with 8 people and 1 group jyuh cassj schuylrp barriot waszak dmontaner Eugene heliopais BioinfoCIPF
  • Improving gene set analysis of microarray data by SAM-GS
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Irina Dinu, John Potter, Thomas Mueller, Qi Liu, Adeniyi Adewale, Gian Jhangri, Gunilla Einecke, Konrad Famulski, Philip Halloran, Yutaka Yasui
    posted to algorithm expression gene_set_analysis microarray by ealloza on 2007-07-06 10:44:14 as read along with 8 people and 1 group jfr shigepong ghattem GeeSharpMinor waghsk LuigiAugugliaro heliopais renatomilani BioinfoCIPF
  • Functional interpretation of microarray experiments.
    OMICS, Vol. 10, No. 3. (2006), pp. 398-410.
    by J Dopazo
    posted to gene_list_analysis gene_set_analysis microarray review by ealloza on 2007-06-25 17:38:29 as read along with 1 person and 1 group jfr BioinfoCIPF
  • Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation.
    Bioinformatics (28 March 2007)
    by Daniel Kemp, N R R Nirmala, Joseph D D Szustakowski
    posted to expression gene_set_analysis microarray by ealloza on 2007-06-25 13:02:28 as read along with 2 people and 1 group jfr hhlee BioinfoCIPF
  • Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
    Genome Biology, Vol. 7 (17 October 2006), R93.
    by David M Levine, David R Haynor, John Castle, Sergey Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
    posted to coexpression coherence comparison expression gene_list_analysis gene_set_analysis microarray mrna pathway by ealloza on 2007-06-04 11:07:04 as *** along with 3 people and 1 group dragonrez jfr heliopais BioinfoCIPF
  • Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
    BMC Bioinformatics, Vol. 8 (02 June 2007), 179.
    by Markus Weniger, Julia C Engelmann, Joerg Schultz
    posted to expression microarray pathway suite webserver by ealloza on 2007-06-04 10:46:29 as ** along with 5 people and 1 group jyuh jfr rdiaz frohike fmenolascina BioinfoCIPF
  • Threshold-free high-power methods for the ontological analysis of genome-wide gene expression studies
    Genome Biology, Vol. 8 (08 May 2007), R74.
    by Bjorn Nilsson, Petra Hakansson, Mikael Johansson, Sven Nelander, Thoas Fioretos
    posted to algorithm expression gene_set_analysis microarray ontology by ealloza on 2007-05-10 15:07:53 as ** along with 1 person and 1 group jfr BioinfoCIPF
  • Interpretation of microarray data in cancer
    British Journal of Cancer, Vol. aop, No. current. (06 March 2007)
    by S Michiels, S Koscielny, C Hill
    posted to cancer expression microarray prediction review validation by ealloza on 2007-04-19 15:05:07 as ** along with 4 people and 1 group frohike laral jfr bioyang BioinfoCIPF
  • From genes to functional classes in the study of biological systems
    BMC Bioinformatics, Vol. 8 (03 April 2007), 114.
    by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo
    posted to evolution expression gene_set_analysis interaction microarray by ealloza on 2007-04-17 18:25:54 as ***** along with 6 people and 1 group jfr Sharpshoot ajw Garamonfok djkt sgoetz BioinfoCIPF
  • MicroRNAs and cancer
    British Journal of Surgery, Vol. 94, No. 1. (January 2007), pp. 23-30.
    by Wijnhoven, , Michael, , Watson,
    posted to cancer expression human microarray microrna review by ealloza on 2007-04-10 15:55:07 as ** along with 2 people and 1 group tardigrade Garamonfok BioinfoCIPF
  • Meta-analysis of several gene lists for distinct types of cancer: A simple way to reveal common prognostic markers
    BMC Bioinformatics, Vol. 8 (06 April 2007), 118.
    by Xinan Yang, Xiao Sun
    posted to cancer expression gene_list_analysis human meta_analysis microarray by ealloza on 2007-04-10 11:16:58 as ** along with 4 people and 1 group jfr shigepong ugengma srp33 BioinfoCIPF
  • GO-Mapper: functional analysis of gene expression data using the expression level as a score to evaluate Gene Ontology terms.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2618-2625.
    by M Smid, LC Dorssers
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza on 2007-03-12 15:40:07 as read along with 1 group BioinfoCIPF
  • GOAL: automated Gene Ontology analysis of expression profiles.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by S Volinia, R Evangelisti, F Francioso, D Arcelli, M Carella, P Gasparini
    posted to algorithm expression functional_annotation gene_set_analysis microarray sage by ealloza on 2007-03-12 15:38:46 as read along with 1 group BioinfoCIPF
  • Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1129-1137.
    by Y Ben-Shaul, H Bergman, H Soreq
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza on 2007-03-12 15:36:36 as read along with 1 group BioinfoCIPF
  • GenePattern 2.0
    Nature Genetics, Vol. 38, No. 5., pp. 500-501.
    by Michael Reich, Ted Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P Mesirov
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza on 2007-03-12 15:06:29 as read along with 3 people and 1 group rdiaz mayercd jyuh BioinfoCIPF
  • notes Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to algorithm expression functional_annotation gene_set_analysis microarray permutations by ealloza on 2007-03-12 15:03:34 as read along with 7 people and 1 group dragonrez maryee frohike justescaped srp33 giovenko heliopais BioinfoCIPF
  • Testing association of a pathway with survival using gene expression data.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1950-1957.
    by JJ Goeman, J Oosting, AM Cleton-Jansen, JK Anninga, HC van Houwelingen
    posted to algorithm expression gene_set_analysis microarray survival by ealloza on 2007-03-12 14:46:06 as read along with 1 group BioinfoCIPF
  • A global test for groups of genes: testing association with a clinical outcome.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 93-99.
    by JJ Goeman, SA van de Geer, F de Kort, HC van Houwelingen
    posted to algorithm expression functional_annotation gene_set_analysis microarray by ealloza on 2007-03-12 14:43:58 as read along with 4 people and 1 group dragonrez ugengma saman_vp klo BioinfoCIPF
  • Analyzing gene expression data in terms of gene sets: methodological issues.
    Bioinformatics (15 February 2007)
    by Jelle J J Goeman, Peter Bühlmann
    posted to algorithm comparison expression functional_annotation gene_set_analysis microarray by ealloza on 2007-03-12 14:39:32 as read along with 5 people and 2 groups jfr shigepong heliopais jyuh diging_data BioinfoCIPF BTS-PT-AS-CS
  • A gene-expression signature to predict survival in breast cancer across independent data sets
    Oncogene, Vol. aop, No. current.
    by A Naderi, AE Teschendorff, NL Barbosa-Morais, SE Pinder, AR Green, DG Powe, JFR Robertson, S Aparicio, IO Ellis, JD Brenton, C Caldas
    posted to cancer expression human microarray prediction signature by ealloza on 2007-03-05 16:10:37 as *** along with 3 people and 2 groups jfr giovanni Ao_Li2007 BioinfoCIPF GeschwindLab
  • Enrichment or depletion of a GO category within a class of genes: which test?
    Bioinformatics (20 December 2006)
    by Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude C Potier
    posted to algorithm comparison expression gene_list_analysis microarray review by ealloza on 2007-02-15 10:51:18 as ** along with 8 people and 2 groups paszkows winterschlaefer jyuh grahamc capitall zhouyu yas maralena BioinfoCIPF ParkinsonLab_at_MaRS
  • A network biology approach to prostate cancer
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Ayla Ergun, Carolyn A Lawrence, Michael A Kohanski, Timothy A Brennan, James J Collins
    posted to cancer expression microarray network by ealloza on 2007-02-15 10:36:15 as *** along with 5 people and 1 group nolodie kentsis jfr mikaelhuss oelemento BioinfoCIPF
  • FUNC: a package for detecting significant associations between gene sets and ontological annotations
    BMC Bioinformatics, Vol. 8 (06 February 2007), 41.
    by Kay Prufer, Bjoern Muetzel, Hong-Hai Do, Gunter Weiss, Philipp Khaitovich, Erhard Rahm, Svante Paabo, Michael Lachmann, Wolfgang Enard
    posted to algorithm expression gene_list_analysis gene_set_analysis microarray by ealloza on 2007-02-12 18:00:00 as read along with 4 people and 1 group leechuck cap1 heliopais ndiaz BioinfoCIPF
  • Extensions to gene set enrichment
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 306-313.
    by Zhen Jiang, Robert Gentleman
    posted to microarray gene_set_analysis expression algorithm by ealloza on 2007-02-05 10:58:15 as ***** along with 5 people and 1 group djkt waghsk heliopais giovenko magusina BioinfoCIPF
  • Physiological identification of human transcripts translationally regulated by a specific microRNA
    Hum. Mol. Genet., Vol. 14, No. 24. (15 December 2005), pp. 3813-3821.
    by Mika Nakamoto, Peng Jin, William T O'Donnell, Stephen T Warren
    posted to target microrna microarray by ealloza on 2007-01-26 11:57:43 as *** along with 1 group BioinfoCIPF
  • Discovering tightly regulated and differentially expressed gene sets in whole genome expression data.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by C Ye, E Eskin
    posted to microarray gene_set_analysis functional_annotation expression algorithm by ealloza on 2007-01-24 12:44:19 as read along with 2 people and 2 groups shigepong MrBrownShoes BioinfoCIPF NBI
  • Detection of small genomic imbalances using microarray-based multiplex amplifiable probe hybridization
    European Journal of Human Genetics, Vol. aop, No. current.
    by Philippos C Patsalis, Ludmila Kousoulidou, Katrin Männik, Carolina Sismani, Olga Žilina, Sven Parkel, Helen Puusepp, Neeme Tõnisson, Priit Palta, Maido Remm, Ants Kurg,
    posted to microarray copy_number aberration by ealloza on 2007-01-19 10:32:30 as *** along with 1 group BioinfoCIPF
  • Identification of differentially expressed microRNAs by microarray: A possible role for microRNA genes in pituitary adenomas.
    J Cell Physiol, Vol. 210, No. 2. (February 2007), pp. 370-377.
    by A Bottoni, MC Zatelli, M Ferracin, F Tagliati, D Piccin, C Vignali, GA Calin, M Negrini, CM Croce, EC Degli Uberti
    posted to cancer human microarray microrna by ealloza on 2007-01-02 11:24:10 as *** along with 1 person and 1 group tardigrade BioinfoCIPF
  • Chromosomal patterns of gene expression from microarray data: methodology, validation and clinical relevance in gliomas
    BMC Bioinformatics, Vol. 7 (01 December 2006), 526.
    by Federico E Turkheimer, Federico Roncaroli, Benoit Hennuy, Christian Herens, Minh Nguyen, Didier Martin, Annick Evrard, Vincent Bours, Jacques Boniver, Manuel Deprez
    posted to microarray human expression chromosome cancer algorithm by ealloza on 2006-12-12 15:34:11 as *** along with 2 people and 1 group jfr shigepong BioinfoCIPF
  • A multivariate approach for integrating genome-wide expression data and biological knowledge
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2373-2380.
    by Sek W Kong, William T Pu, Peter J Park
    posted to algorithm expression gene_set_analysis microarray by ealloza on 2006-12-12 15:32:02 as read along with 2 people and 1 group jfr aconesa BioinfoCIPF
  • Natural selection on human microRNA binding sites inferred from SNP data.
    Nat Genet (29 October 2006)
    by Kevin Chen, Nikolaus Rajewsky
    posted to human microarray microrna prediction snp target by ealloza on 2006-12-01 13:19:21 as read along with 9 people and 3 groups jfr tardigrade andersbj mtagaya plofje Garamonfok heliopais bpcusack ramensky Bioinformatics microRNA BioinfoCIPF
  • The role of microRNA genes in papillary thyroid carcinoma.
    Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 19075-19080.
    by H He, K Jazdzewski, W Li, S Liyanarachchi, R Nagy, S Volinia, GA Calin, CG Liu, K Franssila, S Suster, RT Kloos, CM Croce, A de la Chapelle
    posted to cancer expression human microarray microrna by ealloza on 2006-11-29 14:31:26 as read along with 1 person and 1 group textoris BioinfoCIPF
  • A limited set of human MicroRNA is deregulated in follicular thyroid carcinoma.
    J Clin Endocrinol Metab, Vol. 91, No. 9. (September 2006), pp. 3584-3591.
    by F Weber, RE Teresi, CE Broelsch, A Frilling, C Eng
    posted to cancer human microarray microrna by ealloza on 2006-11-29 10:55:16 as read along with 1 group BioinfoCIPF
  • MicroRNA expression abnormalities in pancreatic endocrine and acinar tumors are associated with distinctive pathologic features and clinical behavior.
    J Clin Oncol, Vol. 24, No. 29. (10 October 2006), pp. 4677-4684.
    by C Roldo, E Missiaglia, JP Hagan, M Falconi, P Capelli, S Bersani, GA Calin, S Volinia, CG Liu, A Scarpa, CM Croce
    posted to cancer human microarray microrna by ealloza on 2006-11-27 19:03:00 as **** along with 1 group BioinfoCIPF
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