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dquests library [368 articles]

Neue Artikel in dquests library ordered by importance.
  • Factors influencing the identification of transcription factor binding sites by cross-species comparison.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1523-1532.
    by LA McCue, W Thompson, CS Carmack, CE Lawrence
    posted to motifpaper by dquest on 2006-09-28 21:05:10 as ***** along with 2 people kaarsinogen nklee
  • Protein–Protein Interactions More Conserved within Species than across Species
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e79.
    by Sven Mika, Burkhard Rost
    posted to proteinnetworks by dquest on 2006-07-25 14:29:31 as ***** along with 3 people and 2 groups chad_davis marcius skhadar BioinfoCIPF SGU-CIPF
  • notes A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    Biology Direct, Vol. 1 (16 March 2006), 7.
    by Kira S Makarova, Nick V Grishin, Svetlana A Shabalina, Yuri I Wolf, Eugene V Koonin
    posted to rnai by dquest on 2006-06-07 15:17:53 as ***** along with 2 people and 2 groups ana saru structural_bioinformatics Bioinformatics
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to motifsampling by dquest on 2006-05-22 14:36:03 as ***** along with 9 people and 2 groups ana barry tuck chad_davis lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
  • notes Empirical evaluation of data transformations and ranking statistics for microarray analysis.
    Nucleic Acids Res, Vol. 32, No. 18. (2004), pp. 5471-5479.
    by LX Qin, KF Kerr,
    posted to basedonbaldietal microarrayanalysis by dquest on 2006-03-06 20:23:12 as ***** along with 2 people daforerog schuylrp
  • notes Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
    posted to proteinnetworks by dquest on 2006-11-22 01:55:44 as **** along with 15 people and 1 group ethkim cerca AbnerCYH Borelli carlk pdelosri jfr chad_davis balajis nirfriedman grahamc cjeans hpaces Pao-Yang oktie EPFL_SB_ITP_LBS
  • notes Finding functional features in Saccharomyces genomes by phylogenetic footprinting.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 71-76.
    by P Cliften, P Sudarsanam, A Desikan, L Fulton, B Fulton, J Majors, R Waterston, BA Cohen, M Johnston
    posted to motifpaper by dquest on 2006-09-28 22:36:30 as **** along with 4 people and 1 group evaf chad_davis Eonwe cisevol cis-regulatory-evolution
  • 1471-2105-7-341.pdf (application/pdf Object)
    BMC Bioinformatics, Vol. 7, No. 341. (2006)
    by Randi, Kerrie, Laura, Nima, Ward, Howard, Muthu, John, Huynh-Hoa, Philip, Julia, Romulo, Russell, John, Stephen, Scott, Scott, Bjoern, Alessandro
    posted to imunology by dquest on 2006-07-17 13:45:12 as ****
  • BioMed Central | Abstract | 1471-2105-7-279 | Optimized mixed Markov models for motif identification
    posted to motifsampling by dquest on 2006-06-05 17:43:01 as ****
  • notes Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach
    Nucl. Acids Res., Vol. 30, No. 24. (15 December 2002), pp. 5517-5528.
    by Leendert W Hamoen, Wiep K Smits, Anne Jong, Siger Holsappel, Oscar P Kuipers
    posted to basedonbaldietal microarrayanalysis by dquest on 2006-03-06 20:30:51 as ****
  • From patterns to pathways: gene expression data analysis comes of age
    Nature Genetics
    posted to no-tag by dquest on 2006-02-09 23:24:45 as **** along with 1 person lyongu
  • A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 509-519.
    by P Baldi, AD Long
    posted to analysis microarray by dquest on 2006-02-09 23:21:52 as **** along with 7 people and 1 group textoris lyongu daniel_quest jeremymiller shigepong jo_davies baldigroup GeschwindLab
  • notes In silico representation and discovery of transcription factor binding sites.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 217-236.
    by G Pavesi, G Mauri, G Pesole
    posted to motifpaper by dquest on 2006-10-02 20:22:31 as *** along with 2 people gdb xili03
  • Highly specific and accurate selection of siRNAs for high-throughput functional assays
    Bioinformatics, Vol. 21, No. 8., pp. 1376-1382.
    by Javier Santoyo, Juan M Vaquerizas, Joaquín Dopazo
    posted to rnai by dquest on 2006-03-13 19:21:48 as ***
  • ChIP-Seq Data Reveal Nucleosome Architecture of Human Promoters
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 831-832.
    by Christoph D Schmid, Philipp Bucher
    posted to chipseq by dquest on 2008-07-28 23:50:58 as ** along with 2 people vega mikaelhuss
  • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
    Nat Methods (11 June 2007)
    by Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L L Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones
    posted to chipseq by dquest on 2008-07-28 23:48:51 as ** along with 6 people and 1 group raiyar slevy03 jyuh vega kengg ghattem Plantandetc
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
    posted to chipseq by dquest on 2008-07-28 23:47:08 as ** along with 4 people inesdesantiago jasonflannick olympos caseybrown
  • High-resolution profiling of histone methylations in the human genome.
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by A Barski, S Cuddapah, K Cui, TY Roh, DE Schones, Z Wang, G Wei, I Chepelev, K Zhao
    posted to chipseq by dquest on 2008-07-28 23:46:03 as ** along with 8 people and 1 group inesdesantiago jyuh kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha Plantandetc
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to chipseq by dquest on 2008-07-28 23:45:13 as ** along with 18 people and 5 groups aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to chipchip by dquest on 2008-07-28 23:36:19 as ** along with 26 people and 2 groups siebert Takayuki Borelli kristallreiner brant camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike dbk-lab TNT
  • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF.
    Nature, Vol. 409, No. 6819. (25 January 2001), pp. 533-538.
    by VR Iyer, CE Horak, CS Scafe, D Botstein, M Snyder, PO Brown
    posted to chipchip by dquest on 2008-07-28 23:35:06 as ** along with 1 person kaarsinogen
  • Genome-Wide Location and Function of DNA Binding Proteins
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2306-2309.
    by Bing Ren, Francois Robert, John J Wyrick, Oscar Aparicio, Ezra G Jennings, Itamar Simon, Julia Zeitlinger, Jorg Schreiber, Nancy Hannett, Elenita Kanin, Thomas L Volkert, Christopher J Wilson, Stephen P Bell, Richard A Young
    posted to chipchip by dquest on 2008-07-28 23:34:01 as ** along with 8 people jonsta247 kristallreiner miguel kaarsinogen johncumbers tvdbulck epigenetics yevishere
  • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.
    Nature genetics, Vol. 28, No. 4. (August 2001), pp. 327-334.
    by JD Lieb, X Liu, D Botstein, PO Brown
    posted to chipchip by dquest on 2008-07-28 23:32:59 as **
  • Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts.
    Genome research, Vol. 18, No. 6. (June 2008), pp. 900-910.
    by BK Cho, EM Knight, CL Barrett, BØ Palsson
    posted to bioregulationoverview by dquest on 2008-07-03 22:55:23 as **
  • YaeL (EcfE) activates the sigma E pathway of stress response through a site-2 cleavage of anti-sigma E, RseA
    Genes Dev., Vol. 16, No. 16. (15 August 2002), pp. 2147-2155.
    by Kazue Kanehara, Koreaki Ito, Yoshinori Akiyama
    posted to bioregulationoverview by dquest on 2008-07-03 20:01:16 as **
  • A new mechanism for coactivation of transcription initiation: repositioning of an activator triggered by the binding of a second activator.
    Cell, Vol. 66, No. 6. (20 September 1991), pp. 1185-1195.
    by E Richet, D Vidal-Ingigliardi, O Raibaud
    posted to bioregulationoverview by dquest on 2008-07-01 19:02:48 as **
  • Determinants of the C-Terminal Domain of the Escherichia coli RNA Polymerase alpha Subunit Important for Transcription at Class I Cyclic AMP Receptor Protein-Dependent Promoters
    J. Bacteriol., Vol. 184, No. 8. (15 April 2002), pp. 2273-2280.
    by Nigel J Savery, Georgina S Lloyd, Stephen J Busby, Mark S Thomas, Richard H Ebright, Richard L Gourse
    posted to bioregulationoverview by dquest on 2008-06-26 21:34:12 as **
  • Prokaryotic Gene Expression
    (1999)
    edited by Simon Baumberg
    posted to bioregulationoverview by dquest on 2008-06-26 20:11:59 as **
  • A Genetic Switch Phage Lambda Revisited
    (2004)
    by Mark Ptashne
    posted to bioregulationoverview by dquest on 2008-06-25 21:45:38 as **
  • An Introduction to Systems Biology Design Principles of Biological Circuits
    (2007)
    by Uri Alon
    posted to bioregulationoverview by dquest on 2008-06-25 20:49:22 as **
  • Colloquium Papers: Genomic analysis of the hierarchical structure of regulatory networks
    PNAS, Vol. 103, No. 40. (3 October 2006), pp. 14724-14731.
    by Haiyuan Yu, Mark Gerstein
    posted to bioregulationoverview by dquest on 2008-06-20 01:25:03 as ** along with 2 people bootsy RobMills
  • An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
    Nucl. Acids Res., Vol. 32, No. 22. (16 December 2004), pp. 6643-6649.
    by Hong-Wu Ma, Bharani Kumar, Uta Ditges, Florian Gunzer, Jan Buer, An-Ping Zeng
    posted to bioregulationoverview by dquest on 2008-06-20 01:24:17 as **
  • Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by Hong W Ma, Jan Buer, An P Zeng
    posted to bioregulationoverview by dquest on 2008-06-20 01:19:10 as ** along with 1 person hustwj
  • Hierarchy and feedback in the evolution of the Escherichia coli transcription network
    PNAS, Vol. 104, No. 13. (27 March 2007), pp. 5516-5520.
    by Cosentino, P Jona, B Bassetti, H Isambert
    posted to bioregulationoverview by dquest on 2008-06-20 01:09:31 as ** along with 3 people jjray cjeans zwang
  • Regulation of proteolysis of the stationary-phase sigma factor RpoS.
    Journal of bacteriology, Vol. 180, No. 5. (March 1998), pp. 1154-1158.
    by Y Zhou, S Gottesman
    posted to bioregulationoverview by dquest on 2008-06-18 21:43:49 as **
  • Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 A Resolution
    Science, Vol. 292, No. 5523. (8 June 2001), pp. 1876-1882.
    by Averell L Gnatt, Patrick Cramer, Jianhua Fu, David A Bushnell, Roger D Kornberg
    posted to bioregulationoverview by dquest on 2008-06-17 22:01:29 as **
  • A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 9919-9924.
    by RA Lease, M Belfort
    posted to bioregulationoverview by dquest on 2008-06-16 22:18:22 as **
  • Switching on and off with RNA.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 18. (29 August 2000), pp. 9824-9826.
    by S Altuvia, EG Wagner
    posted to regulatorynetworks bioregulationoverview by dquest on 2008-06-16 21:31:05 as ** along with 1 person austin
  • Molecular Genetics of Bacteria
    (2003)
    by Larry Snyder, Wendy Champness
    posted to bioregulationoverview by dquest on 2008-06-16 20:55:43 as **
  • The molecular basis of eukaryotic transcription
    PNAS, Vol. 104, No. 32. (7 August 2007), pp. 12955-12961.
    by Roger D Kornberg
    posted to transcriptionbasics by dquest on 2008-06-12 17:42:00 as ** along with 3 people and 2 groups brant dchughes hplatero G4ID Genetics-of-Gambling
  • The regulation of bacterial transcription initiation.
    Nat Rev Microbiol, Vol. 2, No. 1. (January 2004), pp. 57-65.
    by DF Browning, SJ Busby
    posted to transcriptregulation transcriptionbasics by dquest on 2008-06-12 16:24:16 as ** along with 3 people and 1 group monod jstajic nickluscombe EBI-regulation
  • Escherichia coli and Salmonella typhimurium Cellular and Molecular Biology
    Vol. 2 (1987)
    edited by Frederick C Neidhardt, John L Ingrahm, Brooks K Low, Boris Magasanik, Moselio Schaechter, Edwin Umbarger
    posted to regulatorynetworks ecoli by dquest on 2008-06-12 16:20:52 as **
  • Symposia on Quantitative Biology
    Vol. LXIII (1998)
    posted to regulatorynetworks by dquest on 2008-06-12 15:54:19 as ** along with 1 person Web2Aspire
  • Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by BC Foat, AV Morozov, HJ Bussemaker
    posted to regulatorynetworks by dquest on 2008-06-11 23:44:07 as ** along with 3 people xili03 lusk yevishere
  • Genes & Signals
    (2002)
    by Mark Ptashne, Alexander Gann
    posted to regulatorynetworks by dquest on 2008-06-11 23:36:45 as **
  • Conservation of RNA polymerase.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 12, No. 7. (July 1990), pp. 343-346.
    by GC Rowland, RE Glass
    posted to regulatorynetworks by dquest on 2008-06-11 23:17:00 as **
  • Biochemistry
    (2004)
    by Donald Voet, Judith G Voet
    posted to general by dquest on 2008-06-11 23:03:53 as **
  • The Eukaryotic Genome as an RNA Machine
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1787-1789.
    by Paulo P Amaral, Marcel E Dinger, Tim R Mercer, John S Mattick
    posted to regulatorynetworks by dquest on 2008-06-11 22:47:07 as ** along with 6 people and 1 group siebert operon dullhunk AbnerCYH biomcgary dlobo GEB
  • The EcoCyc Database
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 56-58.
    by Peter D Karp, Monica Riley, Milton Saier, Ian T Paulsen, Julio Collado-Vides, Suzanne M Paley, Alida Pellegrini-Toole, Cesar Bonavides, Socorro Gama-Castro
    posted to regulatorynetworks by dquest on 2008-06-10 20:56:50 as ** along with 1 person balajis
  • Regulatory Blueprint for a Chordate Embryo
    Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187.
    by Kaoru S Imai, Michael Levine, Nori Satoh, Yutaka Satou
    posted to regulatorynetworks by dquest on 2008-06-10 20:01:54 as ** along with 5 people and 3 groups Auger emilyhare nirfriedman nickluscombe noano Dead 60's EisenLab EBI-regulation
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