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dquests Liu [18 articles]

Recent papers posted to dquests library by the author Liu. You can also see everyones Liu.
  • FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 958-970.
    by M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, XS Liu, M Brown
    posted to histones by dquest on 2008-05-02 19:48:31 as **
  • Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    BMC Bioinformatics, Vol. 8 (03 August 2007), 283.
    by Xiangdong Liu, Walter J Jessen, Siva Sivaganesan, Bruce J Aronow, Mario Medvedovic
    posted to motifpaper motifsampling by dquest on 2007-11-22 13:59:46 as ** along with 2 people and 1 group nklee naegele ic4
  • A method for rapid similarity analysis of RNA secondary structures
    BMC Bioinformatics, Vol. 7 (08 November 2006), 493.
    by Na Liu, Tianming Wang
    posted to grammarpaper by dquest on 2006-11-09 18:51:52 as read along with 1 person austin
  • notes Principal component analysis for predicting transcription-factor binding motifs from array-derived data.
    BMC Bioinformatics, Vol. 6 (2005)
    by Y Liu, MP Vincenti, H Yokota
    posted to motifpaper by dquest on 2006-10-02 18:25:12 as ** along with 1 person heliopais
  • notes RSIR: regularized sliced inverse regression for motif discovery.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4169-4175.
    by W Zhong, P Zeng, P Ma, JS Liu, Y Zhu
    posted to motifpaper by dquest on 2006-10-02 17:29:07 as **
  • notes A Uniform Projection Method for Motif Discovery in DNA Sequences
    IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 1, No. 2. (April 2004), pp. 91-94.
    by Benjamin Raphael, Lung-Tien Liu, George Varghese
    posted to motifpaper by dquest on 2006-10-02 15:48:14 as **
  • notes BioOptimizer: a Bayesian scoring function approach to motif discovery.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1557-1564.
    by ST Jensen, JS Liu
    posted to motifpaper by dquest on 2006-10-02 15:33:42 as **
  • notes Modeling within-motif dependence for transcription factor binding site predictions.
    Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 909-916.
    by Q Zhou, JS Liu
    posted to motifsampling by dquest on 2006-09-29 23:02:10 as ** along with 1 person xili03
  • notes BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
    Pac Symp Biocomput (2001), pp. 127-138.
    by X Liu, DL Brutlag, JS Liu
    posted to motifpaper by dquest on 2006-09-29 21:37:15 as **
  • notes The Collapsed Gibbs Sampler in Bayesian Computation with Applications to a Gene Regulation Problem
    Journal of the American Statistical Association, Vol. 89, No. 427. (September 1994), pp. 958-966.
    by Jun S Liu
    posted to motifpaper by dquest on 2006-09-29 20:36:46 as **
  • notes Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
    Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458.
    by Yueyi Liu, Shirley X Liu, Liping Wei, Russ B Altman, Serafim Batzoglou
    posted to motifpaper by dquest on 2006-09-28 22:17:08 as * along with 3 people lyongu gpalidwor nklee
  • notes Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes.
    Nucleic Acids Res, Vol. 29, No. 3. (1 February 2001), pp. 774-782.
    by L McCue, W Thompson, C Carmack, MP Ryan, JS Liu, V Derbyshire, CE Lawrence
    posted to motifpaper by dquest on 2006-09-28 21:03:12 as read along with 2 people and 1 group adepace nklee EisenLab
  • notes An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Nat Biotechnol, Vol. 20, No. 8. (August 2002), pp. 835-839.
    by XS Liu, DL Brutlag, JS Liu
    posted to motifpaper by dquest on 2006-09-28 20:43:59 as read along with 4 people troels_marstrand opheliav yevishere xili03
  • Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
    Pac Symp Biocomp (2001), pp. 127-138.
    by X Liu, JS Liu, DL Brutlag
    posted to motifpaper by dquest on 2006-09-28 20:41:48 as read
  • notes Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment.
    Science, Vol. 262, No. 5131. (8 October 1993), pp. 208-214.
    by CE Lawrence, SF Altschul, MS Boguski, JS Liu, AF Neuwald, JC Wootton
    posted to motifpaper by dquest on 2006-09-28 20:15:05 as read along with 6 people wenhan AaronDarling johncumbers jguinney xili03 seitentaisei
  • notes A suite of web-based programs to search for transcriptional regulatory motifs.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by Y Liu, L Wei, S Batzoglou, DL Brutlag, JS Liu, XS Liu
    posted to motifpaper by dquest on 2006-09-28 19:17:06 as read
  • BEST: Binding-site Estimation Suite of Tools
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2909-2911.
    by Dongsheng Che, Shane Jensen, Liming Cai, Jun S Liu
    posted to motifpaper motifsampling by dquest on 2006-06-07 20:04:09 as *
  • notes Hotelling's <it>T</it>2 multivariate profiling for detecting differential expression in microarrays
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3105-3113.
    by Yan Lu, Peng-Yuan Liu, Peng Xiao, Hong-Wen Deng
    posted to basedonbaldietal microarrayanalysis by dquest on 2006-03-06 20:03:49 as **
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