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dpollards transcription [27 articles]

Neue Publikationen in dpollards Bibliothek eingetragen unter dem Bezeichner: transcription. You can also see everyone's transcription.
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to colin_presented eisen_journal_club modeling round_robin transcription by dpollard on 2007-11-17 00:11:00 as ** along with 5 people and 3 groups jjray dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
  • Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins.
    Proc Natl Acad Sci U S A, Vol. 104, No. 42. (16 October 2007), pp. 16615-16620.
    by C Beisel, A Buness, IM Roustan-Espinosa, B Koch, S Schmitt, SA Haas, M Hild, T Katsuyama, R Paro
    posted to chip_chip chromatin_modification drosophila transcription by dpollard on 2007-10-25 01:52:45 as ** along with 1 group EisenLab
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to eisen_journal_club epistasis matt_presented network round_robin transcription by dpollard on 2007-06-04 22:39:00 as ** along with 9 people and 6 groups mapplab czeller xico nickluscombe zwang lizabeth dejori xingxu naegele Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • A SNP in a half-binding site creates p53 and estrogen receptor control of VEGFR-1.
    Mol Cell Biol (22 January 2007)
    by Daniel Menendez, Alberto Inga, Joyce Snipe, Oliver Krysiak, Gilbert Schönfelder, Michael A A Resnick
    posted to transcription polymorphism binding_site by dpollard on 2007-02-01 19:55:01 as ** along with 1 person and 2 groups cisevol EisenLab cis-regulatory-evolution
  • Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory
    BMC Bioinformatics, Vol. 8 (23 January 2007), 20.
    by Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J Ortoleva
    posted to transcription network model by dpollard on 2007-02-01 19:52:23 as ** along with 3 people and 1 group aswin shigepong bertelsen EisenLab
  • Connectivity in the Yeast Cell Cycle Transcription Network: Inferences from Neural Networks.
    PLoS Comput Biol, Vol. 2, No. 12. (22 December 2006)
    by Christopher E E Hart, Eric Mjolsness, Barbara J J Wold
    posted to yeast transcription network by dpollard on 2007-01-19 16:58:55 as ** along with 1 person and 1 group mhucka EisenLab
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard on 2006-11-07 00:22:07 as read along with 6 people and 2 groups emptyhb briann adepace lusk nklee cisevol EisenLab cis-regulatory-evolution
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard on 2006-10-11 18:29:07 as read along with 1 group EisenLab
  • Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
    Nat Genet (17 September 2006)
    by Hilde Janssens, Shuling Hou, Johannes Jaeger, Ah-Ram R Kim, Ekaterina Myasnikova, David Sharp, John Reinitz
    posted to drosophila embryo expression gene model pattern prediction transcription by dpollard on 2006-09-30 00:16:37 as *** along with 6 people and 2 groups okarsligil brant adepace allPowerde Stew emptyhb Bioinformatics EisenLab
  • Predicting transcription factor binding sites using local overrepresentation and comparative genomics
    BMC Bioinformatics, Vol. 7 (31 August 2006), 396.
    by Matthieu Defrance, Helene Touzet
    posted to binding comparative prediction transcription by dpollard on 2006-09-08 19:25:42 as ** along with 3 people and 1 group brant gpalidwor natstreet EisenLab
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to alignment annotation conserved constraint evolution human mammal prediction rate selection transcription turnover by dpollard on 2006-06-16 20:47:54 as ** along with 7 people and 2 groups bpcusack mariakmejia indigoviolet samal nickluscombe olympos emptyhb EisenLab EBI-regulation
  • Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs.
    Gene (5 June 2006)
    by Jun-Ichi I Hikima, Mara L L Lennard, Melanie R R Wilson, Norman W W Miller, Gregory W W Warr
    posted to binding grammar motif promoter spacing transcription by dpollard on 2006-06-16 20:44:19 as ** along with 1 group EisenLab
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to binding motif prediction structure transcription by dpollard on 2006-06-16 20:40:23 as ** along with 2 people and 1 group samal nklee EisenLab
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to binding evolution polymorphism promoter selection transcription turnover by dpollard on 2006-06-10 00:48:36 as **** along with 4 people and 2 groups emptyhb kaarsinogen lusk cisevol EisenLab cis-regulatory-evolution
  • Computational Models for Neurogenic Gene Expression in the Drosophila Embryo.
    Curr Biol (1 June 2006)
    by Robert P P Zinzen, Kate Senger, Mike Levine, Dmitri Papatsenko
    posted to cis_regulatory_elements drosophila expression expression_pattern modeling network prediction transcription by dpollard on 2006-06-09 23:01:14 as ** along with 2 people and 1 group klo emilyhare EisenLab
  • Coactivator cross-talk specifies transcriptional output.
    Genes Dev, Vol. 20, No. 11. (1 June 2006), pp. 1458-1469.
    by MT Marr, Y Isogai, KJ Wright, R Tjian
    posted to coactivator drosophila regulation transcription by dpollard on 2006-06-09 22:54:57 as ** along with 1 group EisenLab
  • Flexible promoter architecture requirements for coactivator recruitment
    BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16.
    by Derek Y Chiang, David A Nix, Ryan K Shultzaberger, Audrey P Gasch, Michael B Eisen
    posted to binding expression grammar promoter spacing transcription yeast by dpollard on 2006-05-21 05:08:26 as ***** along with 1 person and 1 group postrational EisenLab
  • Evolutionary turnover of mammalian transcription start sites.
    Genome Res (10 May 2006)
    by Martin C C Frith, Jasmina Ponjavic, David Fredman, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayshizaki, Albin Sandelin
    posted to alignment conserved evolution gene mammal promoter transcription turnover vertebrate by dpollard on 2006-05-12 17:41:10 as ** along with 4 people and 3 groups cmm jsnoddy cisevol gjuggler EisenLab FAB-lab cis-regulatory-evolution
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard on 2006-05-01 22:45:46 as ** along with 1 group EisenLab
  • Periodicity of SNP distribution around transcription start sites.
    BMC Genomics, Vol. 7, No. 1. (3 April 2006)
    by Koichiro Higasa, Kenshi Hayashi
    posted to chimp human nucleosome promoter snps transcription by dpollard on 2006-04-08 23:07:47 as ** along with 1 person and 1 group samal EisenLab
  • Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex.
    Dev Biol (16 March 2006)
    by Omar S S Akbari, Adam Bousum, Esther Bae, Robert A A Drewell
    posted to drosophila hox mechanism regulation transcription by dpollard on 2006-04-02 23:06:26 as ** along with 1 group EisenLab
  • Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites.
    Genes Dev (17 March 2006)
    by Jay Z Z Parrish, Michael D D Kim, Lily Yeh Y Jan, Yuh Nung N Jan
    posted to binding brain development drosophila nervous neuro system transcription by dpollard on 2006-03-31 23:44:47 as ** along with 1 group EisenLab
  • Genome-wide expression dynamics during mouse embryonic development reveal similarities to Drosophila development.
    Dev Biol, Vol. 288, No. 2. (15 December 2005), pp. 595-611.
    by RA Wagner, R Tabibiazar, A Liao, T Quertermous
    posted to conserved development drosophila embryo expression gene insect mouse pattern transcription vertebrate by dpollard on 2006-03-21 20:22:42 as ** along with 1 group EisenLab
  • The design of transcription-factor binding sites is affected by combinatorial regulation.
    Genome Biol, Vol. 6, No. 12. (2005)
    by Y Bilu, N Barkai
    posted to binding grammar transcription yeast by dpollard on 2006-03-21 20:03:38 as *** along with 7 people and 1 group chrn tabu samal adepace lewbin nklee xili03 EisenLab
  • Integrating genomic data to predict transcription factor binding.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 83-94.
    by DT Holloway, M Kon, C DeLisi
    posted to binding data genomic integration prediction transcription by dpollard on 2006-03-21 19:53:19 as ** along with 3 people and 1 group malcook adsmitty nklee EisenLab
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
    posted to gene genetic multi-copy non-essential placticity transcription variation yeast by dpollard on 2006-03-21 19:21:02 as *** along with 2 people and 1 group caseybrown aubinhon EisenLab
  • Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae
    Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2695-2704.
    by Joseph A Martens, Pei-Yun J Wu, Fred Winston
    posted to intergenic transcription yeast by dpollard on 2005-11-16 00:05:40 as *** along with 1 person and 1 group indigoviolet EisenLab
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