dpollards library [408 articles]

Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216.

by Gregory A Wray

posted to cis_regulatory_elements polymorphism regulatory_evolution review variation by dpollard on 2007-11-08 00:12:33 as along with 6 people and 4 groups emptyhb brant dchughes lusk mimulus_99 cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution

J Theor Biol (7 March 2007)

by Günter P P Wagner, Wolfgang Otto, Vincent Lynch, Peter F F Stadler

posted to binding_site model turnover by dpollard on 2007-05-23 01:02:56 as along with 1 person and 2 groups cisevol EisenLab cis-regulatory-evolution

BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16.

by Derek Y Chiang, David A Nix, Ryan K Shultzaberger, Audrey P Gasch, Michael B Eisen

posted to binding expression grammar promoter spacing transcription yeast by dpollard on 2006-05-21 05:08:26 as along with 1 person and 1 group postrational EisenLab

Genetics (17 March 2006)

by Wen-Ya Y Ko, Shengfu Piao, Hiroshi Akashi

posted to base composition drosophila evolution gene nonstationary rate reconstruction tree variation by dpollard on 2006-03-31 23:50:30 as along with 1 group EisenLab

Mol Biol Evol (13 December 2007)

by Nadia D D Singh, Amanda M M Larracuente, Andrew G G Clark

posted to drosophila selection x_vs_autosomes by dpollard on 2008-01-11 18:03:53 as along with 1 group EisenLab

PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.

by Saurabh Sinha, Xin He

posted to alignment alignment_accuracy binding_site_alignment brant_presented cis_regulatory_elements eisen_journal_club method round_robin by dpollard on 2007-11-16 23:53:34 as along with 7 people and 2 groups ana cjeans zwang maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution

Evolution, Vol. 61, No. 5. (2007), pp. 995-1016.

by Hopi E Hoekstra, Jerry A Coyne

posted to adaptation cis_vs_trans evo_devo regulatory_evolution review by dpollard on 2007-06-14 23:50:07 as along with 8 people and 2 groups mjoach stevanspringer mcphee balicea TaqSys epigenetics jayster4 mimulus_99 EisenLab FAB-lab

PLoS Computational Biology, Vol. preprint, No. 2006. (1 December 2006), e7.eor.

by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard

posted to drosophila eisen_journal_club emily_presented motif prediction promoter round_robin by dpollard on 2006-12-13 22:18:54 as along with 1 group EisenLab

Mol Biol Evol (22 November 2006)

by Michael M M Hoffman, Ewan Birney

posted to evolution neutral rate by dpollard on 2006-12-01 23:24:04 as along with 1 group EisenLab

Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.

by V Mustonen, M Lässig

posted to binding evolution polymorphism promoter selection transcription turnover by dpollard on 2006-06-10 00:48:36 as along with 4 people and 2 groups emptyhb kaarsinogen lusk cisevol EisenLab cis-regulatory-evolution

Genome Res (2 June 2006)

by Daniel L L Halligan, Peter D D Keightley

posted to constraint drosophila evolution purifying selection by dpollard on 2006-06-09 22:48:45 as along with 5 people and 3 groups RMGraze penka jri cisevol emptyhb EisenLab Nie cis-regulatory-evolution

Genetics (16 December 2005)

by David Begun, Heather Lindfors, Melissa Thompson, Alisha Holloway

posted to adaptive drosophila evolution gene noncoding by dpollard on 2006-03-21 19:56:01 as along with 1 group EisenLab

Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287.

by Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork

posted to concatonation life phylogeny reconstruction tree by dpollard on 2006-03-21 19:02:31 as along with 11 people and 5 groups Retchless knaseanka tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB

posted to drosophila evolution intergenic mutation by dpollard on 2006-01-13 01:59:45 as along with 1 group EisenLab

Genome Res. (7 November 2007), gr.6691007.

by Peter Andolfatto

posted to drosophila hitchhiking positive_selection by dpollard on 2008-02-13 06:38:24 as along with 3 people and 1 group djkt usagi-kirin mimulus_99 EisenLab

Genetics (3 February 2008)

by Bing Liu, Alberto de la Fuente, Ina Hoeschele

posted to eqtl method network system by dpollard on 2008-02-12 23:12:26 as along with 5 people and 1 group jyuh raiyar xingxu caseybrown smgomez EisenLab

Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.

by Karen M Wong, Marc A Suchard, John P Huelsenbeck

posted to alignment alignment_accuracy by dpollard on 2008-02-01 06:16:50 as along with 19 people and 2 groups adacier jyuh bpb aprasad dayjm tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen

Genome Biology, Vol. 8 (08 November 2007), R236.

by Arjun Bhutkar, William M Gelbart, Temple F Smith

posted to drosophila phylogeny by dpollard on 2008-01-11 18:06:11 as along with 4 people and 1 group indigoviolet balicea maximilianh hpaces EisenLab

Biochem Biophys Res Commun, Vol. 222, No. 3. (24 May 1996), pp. 852-859.

by S Iwamoto, J Li, N Sugimoto, H Okuda, E Kajii

posted to cis_regulatory_elements expression_divergence expression_pattern expression_polymorphism human modularity regulatory_evolution regulatory_sequence_evolution by dpollard on 2007-12-05 23:03:10 as along with 2 groups EisenLab cis-regulatory-evolution

Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679.

by MT Hamblin, A Di Rienzo

posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:53:19 as along with 2 groups EisenLab cis-regulatory-evolution

Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228.

by C Tournamille, Y Colin, JP Cartron, C Le Van Kim

posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:51:01 as along with 2 groups EisenLab cis-regulatory-evolution

Dev Suppl, Vol. 1 (1991), pp. 47-54.

by G Ruvkun, B Wightman, T Bürglin, P Arasu

posted to cis_regulatory_elements co_dominance dominance nematode semi_dominance seminal_paper by dpollard on 2007-11-26 00:38:21 as along with 1 group EisenLab

Mol Biol Evol (2 November 2007)

by Philip L F L Johnson, Montgomery Slatkin

posted to parameter_estimation polymorphism population_genetics sequencing_error by dpollard on 2007-11-25 05:46:42 as along with 2 people and 1 group bpb jmeppley EisenLab

Nature, Vol. 437, No. 7062., pp. 1153-1157.

by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark

posted to gene human population_genetics test_for_selection by dpollard on 2007-11-19 07:34:51 as along with 14 people and 5 groups stevanspringer operon jwortman aprasad dayjm balajis marcius hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group

Nature, Vol. 416, No. 6880. (4 April 2002), pp. 531-534.

by CD Bustamante, R Nielsen, SA Sawyer, KM Olsen, MD Purugganan, DL Hartl

posted to method population_genetics test_for_selection by dpollard on 2007-11-19 07:32:25 as along with 1 person and 1 group djkt EisenLab

Genome Res (7 November 2007)

by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis

posted to cis_regulatory_elements drosophila eisen_journal_club matt_presented prediction round_robin by dpollard on 2007-11-17 00:01:32 as along with 7 people and 2 groups lp2 nklee maximilianh roys caseybrown emptyhb barwil EisenLab cis-regulatory-evolution

BMC Evolutionary Biology, Vol. 7 (25 October 2007), 202.

by Nadia D Singh, Michael J Macpherson, Jeffrey D Jensen, Dmitri A Petrov

posted to drosophila polymorphism population_genetics population_structure by dpollard on 2007-11-14 20:37:17 as along with 1 person and 1 group PetrovLab EisenLab

Mol Biol Evol, Vol. 24, No. 2. (February 2007), pp. 412-426.

by C Ané, B Larget, DA Baum, SD Smith, A Rokas

posted to concordance gene_tree gene_vs_species_tree method phylogeny speciation by dpollard on 2007-11-06 22:35:21 as along with 1 person and 1 group AaronDarling EisenLab

Cell, Vol. 92, No. 1. (9 January 1998), pp. 5-8.

by M Carey

posted to enhanceosome review transcription_factor by dpollard on 2007-10-31 20:42:02 as along with 1 group EisenLab

Curr Opin Genet Dev, Vol. 11, No. 2. (April 2001), pp. 205-208.

by M Merika, D Thanos

posted to enhanceosome review transcription_factor by dpollard on 2007-10-31 20:41:32 as along with 1 group EisenLab

Gene, Vol. 313 (14 August 2003), pp. 43-57.

by M Alvarez, SJ Rhodes, JP Bidwell

posted to enhanceosome review transcription_factor by dpollard on 2007-10-31 20:40:55 as along with 1 group EisenLab

Genome Biology, Vol. 8 (24 October 2007), R225.

by Weichun Huang, Joseph R Nevins, Uwe Ohler

posted to alignment_accuracy cis_regulatory_elements simulation turnover by dpollard on 2007-10-30 18:55:43 as along with 4 people and 2 groups djkt stajich Garamonfok maximilianh EisenLab cis-regulatory-evolution

Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.

by Christopher D Brown, David S Johnson, Arend Sidow

posted to cis_regulatory_elements colin_presented conservation eisen_journal_club grammar in_depth regulatory_evolution round_robin stew_presented by dpollard on 2007-10-29 18:57:23 as along with 8 people and 2 groups djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution

Curr Opin Genet Dev (1 October 2007)

by Julie A A Wallace, Gary Felsenfeld

posted to drosophila insulators by dpollard on 2007-10-25 02:00:08 as along with 3 people and 1 group dchughes sebastien_vigneau maximilianh EisenLab

Genome Biology, Vol. 8 (26 June 2007), R124.

by Amol Prakash, Martin Tompa

posted to alignment alignment_accuracy whole_genome by dpollard on 2007-10-25 01:39:42 as along with 3 people and 2 groups AaronDarling stajich lilou EisenLab Berkeley Mycology

BMC Bioinformatics, Vol. 8, No. 1. (2007)

by Emma Redhead, Timothy Bailey

posted to dan_presented eisen_journal_club motif_detection prediction round_robin by dpollard on 2007-10-25 01:20:26 as along with 5 people and 1 group cjeans nklee niallhaslam maximilianh idonaldson EisenLab

Cell, Vol. 131, No. 1. (5 October 2007), pp. 174-187.

by Eric Lecuyer, Hideki Yoshida, Neela Parthasarathy, Christina Alm, Tomas Babak, Tanja Cerovina, Timothy R Hughes, Pavel Tomancak, Henry M Krause

posted to drosophila gene_expression in_situ by dpollard on 2007-10-19 23:10:47 as along with 2 people and 1 group wrowell oelemento EisenLab

Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.

by Chris T Hittinger, Sean B Carroll

posted to eisen_journal_club in-depth by dpollard on 2007-10-16 21:59:57 as along with 7 people and 2 groups mcphee dchughes djkt biomcgary blobbybirdman hevol kjlipin EisenLab cis-regulatory-evolution

Science (30 August 2007), 1142490.

by Julie C Hotopp, Michael E Clark, Deodoro C Oliveira, Jeremy M Foster, Peter Fischer, Monica C Torres, Jonathan D Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J Spiro, Elodie Ghedin, Barton E Slatko, Herve Tettelin, John H Werren

posted to eisen_journal_club round_robin stuart_presented by dpollard on 2007-10-09 18:13:31 as along with 7 people and 2 groups bluto zwang emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab

PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325.

by Lior David, Wolfgang Huber, Marina Granovskaia, Joern Toedling, Curtis J Palm, Lee Bofkin, Ted Jones, Ronald W Davis, Lars M Steinmetz

posted to noncoding_transcription yeast by dpollard on 2007-07-02 22:54:06 as along with 6 people and 2 groups tuck alexg eckart_bindewald entropy raiyar xingxu EisenLab steinmetzlab

Genome Biology, Vol. 8 (05 June 2007), R101.

by Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S Halfon

posted to angela_presented cis_regulatory_elements crm drosophila eisen_journal_club enhancer regulatory_sequence_evolution round_robin by dpollard on 2007-07-02 21:12:58 as along with 3 people and 1 group lusk cjeans maximilianh EisenLab

Genome Biology, Vol. 8 (13 June 2007), R109.

by Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón

posted to dan_presented eisen_journal_club gene_tree genealogy genome_wide human phylogeny round_robin by dpollard on 2007-06-29 06:01:12 as along with 3 people and 2 groups aprasad grahamc cjeans EisenLab ParkinsonLab_at_MaRS

Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774.

by Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B Brown, Peter Bickel, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A Stone, Kate R Rosenbloom, James W Kent, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A Field, Richard A Moore, Carrie A Matthewson, Jacqueline E Schein, Marco A Marra, Stylianos E Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D Green, Arend Sidow

posted to alignment constraint encode mammal by dpollard on 2007-06-29 05:54:18 as along with 7 people and 4 groups dchughes AaronDarling djkt ghattem Garamonfok gjuggler elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling

PNAS (11 June 2007), 0703988104.

by Anastasios C Koutsos, Claudia Blass, Stephan Meister, Sabine Schmidt, Robert M Maccallum, Marcelo B Soares, Frank H Collins, Vladimir Benes, Evgeny Zdobnov, Fotis C Kafatos, George K Christophides

posted to array dan_presented drosophila eisen_journal_club expression_divergence insect rate regulatory_evolution round_robin by dpollard on 2007-06-29 05:48:18 as along with 2 people and 1 group cjeans george_g EisenLab

PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e106.

by Stephen B Montgomery, Obi L Griffith, Johanna M Schuetz, Angela Brooks-Wilson, Steven J Jones

posted to cis_regulatory_elements eisen_journal_club prediction regulatory_polymorphism round_robin sequence_properties snp venky_presented by dpollard on 2007-06-15 22:54:33 as along with 1 person and 3 groups cisevol Bioinformatics EisenLab cis-regulatory-evolution

Heredity, Vol. aop, No. current.

by JC Fay, PJ Wittkopp

posted to natural_selection regulatory_evolution review by dpollard on 2007-06-14 23:52:58 as along with 3 people and 2 groups djkt cisevol emptyhb EisenLab cis-regulatory-evolution

Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.

by B Prud'homme, N Gompel, SB Carroll

posted to cis_regulatory_elements evolution regulatory_evolution review by dpollard on 2007-06-14 23:47:29 as along with 3 people and 2 groups blobbybirdman cisevol emptyhb EisenLab cis-regulatory-evolution

J Genet Genomics, Vol. 34, No. 3. (March 2007), pp. 196-213.

by Q Deng, Q Zeng, Y Qian, C Li, Y Yang

posted to drosophila karyotype phylogeny by dpollard on 2007-06-13 22:27:37 as along with 1 group EisenLab

Genome Inform, Vol. 17, No. 2. (2006), pp. 14-24.

by V Narang, WK Sung, A Mittal

posted to binding_site cis_regulatory_elements crm drosophila prediction by dpollard on 2007-06-13 22:20:42 as along with 1 group EisenLab

PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e99.

by Scott W Doniger, Justin C Fay

posted to binding_site dynamics eisen_journal_club rich_presented round_robin turnover yeast by dpollard on 2007-06-04 22:33:14 as along with 6 people and 2 groups brant sebastien_vigneau zwang maximilianh cisevol xili03 EisenLab cis-regulatory-evolution