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djkts microbes [52 articles]

Neue Publikationen in djkts Bibliothek eingetragen unter dem Bezeichner: microbes. You can also see everyone's microbes.
  • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    Nature (20 July 2008)
    by Julius S Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs
    posted to microbes metagenomics ecology by djkt on 2008-08-20 20:14:10 as *** along with 1 person and 1 group neils iSEEM
  • Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
    Science, Vol. 309, No. 5739. (26 August 2005), pp. 1387-1390.
    by Jason Gans, Murray Wolinsky, John Dunbar
    posted to microbes metagenomics ecology diversity by djkt on 2008-08-15 18:22:43 as ** along with 4 people and 1 group jlgreen knaseanka jmeppley paleorthid iSEEM
  • Binning sequences using very sparse labels within a metagenome
    BMC Bioinformatics, Vol. 9 (28 April 2008), 215.
    by Chon-Kit K Chan, Arthur L Hsu, Saman K Halgamuge, Sen-Lin Tang
    posted to microbes metagenomics by djkt on 2008-08-15 18:13:29 as ** along with 4 people and 2 groups jlgreen werwiesel alexl mjetten iSEEM microbiology_nijmegen
  • The Airborne Metagenome in an Indoor Urban Environment
    PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862.
    by Susannah G Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah H Lee, Jennifer Yap, Fei Yao, Sim T Suan, Seah K Ing, Matthew Haynes, Forest Rohwer, Chia L Wei, Patrick Tan, James Bristow, Edward M Rubin, Yijun Ruan
    posted to microbes metagenomics by djkt on 2008-08-15 17:55:03 as *** along with 1 person and 1 group semrich iSEEM
  • Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
    ISME J, Vol. 2, No. 8. (May 2008), pp. 865-886.
    by Ana-Belen Martin-Cuadrado, Francisco Rodriguez-Valera, David Moreira, Jose C Alba, Elena Ivars-Martinez, Matthew R Henn, Emmanuel Talla, Purificacion Lopez-Garcia
    posted to microbes metagenomics ecology diversity by djkt on 2008-08-08 02:28:19 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    PNAS
    by Biddle
    posted to microbes metagenomics by djkt on 2008-08-08 02:24:01 as ** along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • The rational exploration of microbial diversity
    ISME (2008)
    by Christopher Quince, Thomas P Curtis, William T Sloan
    posted to microbes metagenomics diversity by djkt on 2008-08-08 02:14:18 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • Evidence of Global Chlorophyll d
    Science, Vol. 321, No. 5889. (1 August 2008), 658.
    by Y Kashiyama, H Miyashita, S Ohkubo, NO Ogawa, Y Chikaraishi, Y Takano, H Suga, T Toyofuku, H Nomaki, H Kitazato, T Nagata, N Ohkouchi
    posted to microbes ecology by djkt on 2008-08-01 16:42:14 as ** along with 1 group iSEEM
  • Multivariate analyses in microbial ecology
    by Alban Ramette
    posted to review microbes ecology by djkt on 2008-07-29 21:16:27 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution
    Microbial Ecology, Vol. 53, No. 2. (February 2007), pp. 197-207.
    by Ramette, Alban, Tiedje, James
    posted to microbes metagenomics evolution ecology diversity by djkt on 2008-07-29 21:13:00 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.
    by Jed A Fuhrman, Joshua A Steele, Ian Hewson, Michael S Schwalbach, Mark V Brown, Jessica L Green, James H Brown
    posted to microbes ecology diversity by djkt on 2008-07-29 20:44:34 as ** along with 3 people and 4 groups jlgreen vaulot skato_toyaku iSEEM Green Lab Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Spatial scaling of microbial biodiversity
    Trends in Ecology & Evolution, Vol. 21, No. 9. (September 2006), pp. 501-507.
    by Jessica Green, Brendan J Bohannan
    posted to review microbes ecology diversity by djkt on 2008-07-29 20:41:15 as read along with 5 people and 3 groups jlgreen mcox vrich jmeppley cmm iSEEM Green Lab FAB-lab
  • Tracking microbial biodiversity through molecular and genomic ecology.
    Research in microbiology, Vol. 159, No. 1. (b 2008), pp. 67-73.
    by P López-García, D Moreira
    posted to review popgen microbes metagenomics evolution ecology by djkt on 2008-07-29 20:36:24 as read along with 2 people and 3 groups jlgreen mjetten iSEEM Green Lab microbiology_nijmegen
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
    posted to microbes metagenomics ecology by djkt on 2008-07-29 20:28:01 as read along with 11 people and 4 groups jlgreen mjetten vrich mcox eoghanharr dayjm jmeppley michC bluto jdelcampo beatrizfernandez iSEEM Green Lab microbiology_nijmegen Microbial-Ecology
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to proteins microbes metagenomics by djkt on 2008-07-29 20:26:23 as read along with 11 people and 4 groups jlgreen mjetten sanchezbuelna vrich mcox bluto jmeppley AaronDarling azazello wenhan sgoetz iSEEM Green Lab microbiology_nijmegen anammox
  • Community genomics in microbial ecology and evolution
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 489-498.
    by Eric E Allen, Jillian F Banfield
    posted to review microbes metagenomics evolution by djkt on 2008-07-29 20:24:26 as read along with 4 people and 2 groups jlgreen mcox knaseanka jmeppley iSEEM Green Lab
  • Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
    posted to popgen microbes metagenomics ecology by djkt on 2008-07-29 20:12:28 as read along with 1 person and 2 groups jlgreen iSEEM Green Lab
  • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
    Nat Methods (29 April 2007)
    by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, Harris Shapiro, Eugene Goltsman, Alice C C McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C C Kyrpides
    posted to simulation microbes metagenomics by djkt on 2008-07-29 20:03:02 as read along with 10 people and 5 groups jlgreen alexl mjetten carlk Yanno oamg jmeppley bluto azazello GustavoLacerda iSEEM Green Lab microbiology_nijmegen Glimcher_Lab Bioinformatics
  • Accurate phylogenetic classification of variable-length DNA fragments
    Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72.
    by Alice C Mchardy, Héctor G Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos
    posted to phylogenetics microbes metagenomics by djkt on 2008-07-29 20:01:28 as read along with 4 people and 3 groups jlgreen bluto azazello wenhan iSEEM Green Lab MBLAB
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to phylogenetics microbes metagenomics evolution by djkt on 2008-07-29 19:58:59 as read along with 12 people and 7 groups jlgreen mjetten ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes iSEEM Green Lab microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity.
    The ISME journal (8 May 2008)
    by Stephen J J Bent, Larry J J Forney
    posted to microbes metagenomics diversity by djkt on 2008-07-29 19:48:18 as read along with 3 people and 2 groups skembel jlgreen jdelcampo iSEEM Green Lab
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    PLoS Comput Biol, Vol. 4, No. 4. (18 April 2008), e1000057.
    by Jon Bohlin, Eystein Skjerve, David W Ussery
    posted to microbes metagenomics by djkt on 2008-07-24 23:12:46 as read along with 1 person and 2 groups jlgreen Green Lab iSEEM
  • Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.
    PLoS Biol, Vol. 4, No. 6. (June 2006)
    by D Wu, SC Daugherty, SE Van Aken, GH Pai, KL Watkins, H Khouri, LJ Tallon, JM Zaborsky, HE Dunbar, PL Tran, NA Moran, JA Eisen
    posted to rna microbes metagenomics by djkt on 2008-07-24 22:43:18 as read along with 1 person and 1 group operon iSEEM
  • Predicting prokaryotic ecological niches using genome sequence analysis.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by G Suen, BS Goldman, RD Welch
    posted to microbes metagenomics ecology by djkt on 2008-07-24 22:41:01 as read along with 5 people and 3 groups druvus jdelcampo blobbybirdman Thaverkamp kroos iSEEM Microbial-Ecology Myxo group
  • Spatial scaling of microbial eukaryote diversity
    Nature, Vol. 432, No. 7018. (09 December 2004), pp. 747-750.
    by Jessica L Green, Andrew J Holmes, Mark Westoby, Ian Oliver, David Briscoe, Mark Dangerfield, Michael Gillings, Andrew J Beattie
    posted to microbes metagenomics ecology by djkt on 2008-07-24 19:04:47 as read along with 1 group iSEEM
  • The diversity and biogeography of soil bacterial communities.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 3. (17 January 2006), pp. 626-631.
    by N Fierer, RB Jackson
    posted to microbes metagenomics ecology by djkt on 2008-07-24 19:03:48 as read along with 1 group iSEEM
  • Larger Islands House More Bacterial Taxa
    Science, Vol. 308, No. 5730. (24 June 2005), 1884.
    by Thomas Bell, Duane Ager, Ji-Inn Song, Jonathan A Newman, Ian P Thompson, Andrew K Lilley, Christopher J van der Gast
    posted to microbes metagenomics ecology by djkt on 2008-07-24 19:02:53 as read along with 1 group iSEEM
  • A taxa-area relationship for bacteria
    Nature, Vol. 432, No. 7018. (09 December 2004), pp. 750-753.
    by Claire C Horner-Devine, Melissa Lage, Jennifer B Hughes, Brendan JM Bohannan
    posted to microbes metagenomics ecology by djkt on 2008-07-24 19:01:07 as read along with 1 person and 1 group mcox iSEEM
  • The application of rarefaction techniques to molecular inventories of microbial diversity.
    Methods Enzymol, Vol. 397 (2005), pp. 292-308.
    by JB Hughes, JJ Hellmann
    posted to microbes metagenomics diversity by djkt on 2008-07-24 19:00:05 as read along with 1 person and 1 group rabu iSEEM
  • Global patterns in bacterial diversity
    by Catherine A Lozupone, Rob Knight
    posted to review microbes metagenomics diversity by djkt on 2008-07-24 18:58:06 as read along with 1 group iSEEM
  • Integration of Microbial Ecology and Statistics: a Test To Compare Gene Libraries
    Appl. Environ. Microbiol., Vol. 70, No. 9. (1 September 2004), pp. 5485-5492.
    by Patrick D Schloss, Bret R Larget, Jo Handelsman
    posted to microbes metagenomics ecology diversity by djkt on 2008-07-24 18:39:36 as read along with 2 people and 1 group mcox jmeppley iSEEM
  • Species divergence and the measurement of microbial diversity
    FEMS Microbiology Reviews (July 2008), pp. 557-578.
    by Catherine A Lozupone, Rob Knight
    posted to review microbes metagenomics ecology by djkt on 2008-07-24 18:04:10 as read along with 2 people and 2 groups skembel jlgreen iSEEM Green Lab
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
    by J Handelsman
    posted to review microbes metagenomics by djkt on 2008-07-24 18:00:33 as *** along with 5 people and 2 groups jlgreen orzenil mcox vrich knaseanka iSEEM Green Lab
  • Metagenomics: genomic analysis of microbial communities.
    Annu Rev Genet, Vol. 38 (2004), pp. 525-552.
    by CS Riesenfeld, PD Schloss, J Handelsman
    posted to review microbes metagenomics by djkt on 2008-07-24 17:59:26 as ** along with 4 people and 2 groups mcox knaseanka jmeppley wenhan iSEEM Green Lab
  • Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e177.
    by Sheri L Simmons, Genevieve Dibartolo, Vincent J Denef, Daniela S Goltsman, Michael P Thelen, Jillian F Banfield
    posted to popgen microbes metagenomics by djkt on 2008-07-23 03:21:12 as ** along with 1 group iSEEM
  • Dynamics of Genome Rearrangement in Bacterial Populations
    PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128.
    by Aaron E Darling, István Miklós, Mark A Ragan
    posted to microbes evolution chromosome by djkt on 2008-07-19 17:13:45 as ** along with 2 people jjray Ema
  • Taxonomic distribution of large DNA viruses in the sea
    Genome Biology, Vol. 9, No. 7. (2008)
    by Adam Monier, Jean M Claverie, Hiroyuki Ogata
    posted to virus microbes metagenomics by djkt on 2008-07-17 23:47:08 as ** along with 1 person and 1 group neils iSEEM
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to microbes metagenomics human by djkt on 2008-07-01 19:18:08 as ** along with 3 people and 1 group sconlan caseybrown aprasad iSEEM
  • Evolution of Mammals and Their Gut Microbes
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651.
    by Ruth E Ley, Micah Hamady, Catherine Lozupone, Peter J Turnbaugh, Rob R Ramey, Stephen J Bircher, Michael L Schlegel, Tammy A Tucker, Mark D Schrenzel, Rob Knight, Jeffrey I Gordon
    posted to microbes metagenomics mammals evolution by djkt on 2008-06-20 16:34:54 as ** along with 5 people and 2 groups qwermish jlgreen lp2 dchughes dinnes Green Lab iSEEM
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob A A Tennessen
    posted to proteins microbes evolution divergence by djkt on 2008-06-13 17:00:12 as ** along with 3 people APRegier Ema gjuggler
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to network microbes evolution by djkt on 2008-06-10 22:27:33 as ** along with 7 people and 2 groups stringertheory dbikard deanmalmgren jjray skumagai roys brembs Centre de Recherches Interdisciplinaires Bacterial Genome Plasticity
  • Confusing Kinships
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1031-1033.
    by John Bohannon
    posted to review phylogenetics microbes by djkt on 2008-05-23 17:20:20 as read along with 1 group iSEEM
  • The Microbial Engines That Drive Earth's Biogeochemical Cycles
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1034-1039.
    by Paul G Falkowski, Tom Fenchel, Edward F Delong
    posted to review microbes evolution ecology by djkt on 2008-05-23 17:19:08 as read along with 3 people and 2 groups fornstar tharris jdelcampo iSEEM Microbial-Ecology
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
    posted to review phylogenetics microbes metagenomics ecology by djkt on 2008-05-23 17:15:53 as ** along with 5 people and 5 groups dbensasson dbikard vaulot stajich jdelcampo iSEEM Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Berkeley Mycology Microbial-Ecology
  • Microbial Ecology of Ocean Biogeochemistry: A Community Perspective
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1043-1045.
    by Suzanne L Strom
    posted to review microbes metagenomics ecology by djkt on 2008-05-23 17:14:32 as ** along with 2 people and 2 groups fornstar jdelcampo iSEEM Microbial-Ecology
  • Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1047-1050.
    by Anders F Andersson, Jillian F Banfield
    posted to virus microbes metagenomics by djkt on 2008-05-23 17:10:54 as ** along with 1 group iSEEM
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    posted to phylogenetics msa microbes evolution by djkt on 2008-04-19 05:19:34 as ** along with 1 person aprasad
  • Innate Immune Homeostasis by the Homeobox Gene Caudal and Commensal-Gut Mutualism in Drosophila
    Science (24 January 2008), 1149357.
    by Ji-Hwan Ryu, Sung-Hee Kim, Hyo-Young Lee, Jin Y Bai, Young-Do Nam, Jin-Woo Bae, Dong G Lee, Seung C Shin, Eun-Mi Ha, Won-Jae Lee
    posted to microbes fly ecology by djkt on 2008-02-08 20:02:01 as ** along with 1 person tibbitts
  • Comparing Patterns of Natural Selection across Species Using Selective Signatures
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e23.
    by Jesse B Shapiro, Eric J Alm
    posted to selection phylogenetics microbes evolution by djkt on 2008-02-08 19:59:29 as ** along with 3 people operon Garamonfok qwermish
  • Dissecting the Genetic Components of Adaptation of Escherichia coli to the Mouse Gut
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e2.
    by Antoine Giraud, Safia Arous, Marianne D Paepe, Valérie Gaboriau-Routhiau, Jean-Christophe Bambou, Sabine Rakotobe, Ariel B Lindner, François Taddei, Nadine Cerf-Bensussan
    posted to evolution microbes popgen by djkt on 2008-01-11 18:14:44 as **
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