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djkts conservation [34 articles]

Neue Publikationen in djkts Bibliothek eingetragen unter dem Bezeichner: conservation. You can also see everyone's conservation.
  • Widespread conservation of genetic redundancy during a billion years of eukaryotic evolution
    Trends in Genetics, Vol. 24, No. 10., pp. 485-488.
    by Tanya Vavouri, Jennifer I Semple, Ben Lehner
    posted to expression evolution duplication conservation by djkt on 2008-10-01 19:16:54 as **
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Research, Vol. 18, No. 10., 1592.
    by Alisha
    posted to fly evolution conservation acceleration by djkt on 2008-10-01 19:08:20 as **
  • Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila
    Genome Biology, Vol. 9 (10 September 2008), R134.
    by Enrique Blanco, Miguel Pignatelli, Sergi Beltran, Adria Punset, Silvia Perez-Lluch, Florenci Serras, Roderic Guigo, Montserrat Corominas
    posted to fly expression development conservation chromatin by djkt on 2008-10-01 01:02:23 as **
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to annotation chip-chip conservation evolution expression primates tf by djkt on 2008-08-15 17:24:04 as read along with 7 people and 2 groups alhufton bpcusack aprasad pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
  • Evolution of the mammalian transcription factor binding repertoire via transposable elements
    by Bourque
    posted to acceleration conservation duplication evolution tf by djkt on 2008-08-07 16:53:01 as **
  • Spatial and temporal heterogeneity in nucleotide sequence evolution.
    Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1683-1694.
    by S Whelan
    posted to conservation evolution molclock msa by djkt on 2008-07-18 21:05:56 as **
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to conservation by djkt on 2008-06-22 18:10:45 as ** along with 2 people nklee dchughes
  • Rapid molecular evolution in a living fossil
    Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 106-109.
    by Jennifer M Hay, Sankar Subramanian, Craig D Millar, Elmira Mohandesan, David M Lambert
    posted to conservation evolution by djkt on 2008-02-28 17:47:07 as ** along with 4 people dchughes bpcusack altotor hippienw
  • Identification of Motifs That Are Conserved in 12 Drosophila Species and Regulate Midline Glia vs. Neuron Expression
    Genetics, Vol. 178, No. 2. (1 February 2008), pp. 787-799.
    by Patricia Estes, Eric Fulkerson, Yi Zhang
    posted to conservation expression fly tf by djkt on 2008-02-20 19:36:06 as **
  • Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock
    Mol Biol Evol, Vol. 25, No. 2. (1 February 2008), pp. 402-408.
    by Stuart Stephen, Michael Pheasant, Igor V Makunin, John S Mattick
    posted to conservation evolution molclock by djkt on 2008-02-06 01:44:27 as ** along with 1 person gjuggler
  • Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
    Genome Res. (10 December 2007), gr.6929408.
    by David M Mcgaughey, Ryan M Vinton, Jimmy Huynh, Amr Al-Saif, Michael A Beer, Andrew S Mccallion
    posted to annotation conservation tf by djkt on 2008-02-05 18:56:33 as ** along with 2 people brant maximilianh
  • Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila.
    Bioinformatics (24 November 2007)
    by Xiaowo Wang, Jin Gu, Michael Q Q Zhang, Yanda Li
    posted to annotation conservation fly rna by djkt on 2008-01-14 15:21:53 as ** along with 4 people and 1 group heliopais Alexander_Kanitz maralena bootsy microRNA
  • Analysis of Sequence Conservation at Nucleotide Resolution
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e254.
    by Saurabh Asthana, Mikhail Roytberg, John Stamatoyannopoulos, Shamil Sunyaev
    posted to conservation by djkt on 2008-01-07 16:36:49 as ** along with 4 people GustavoLacerda nklee maximilianh aprasad
  • Phylogenetic Simulation of Promoter Evolution: Estimation and Modeling of Binding Site Turnover Events and Assessing Their Impact on Alignment Tools
    Genome Biology, Vol. 8 (24 October 2007), R225.
    by Weichun Huang, Joseph R Nevins, Uwe Ohler
    posted to alignment conservation evolution simulation tf by djkt on 2007-11-13 16:31:20 as ** along with 4 people and 2 groups dpollard stajich Garamonfok maximilianh EisenLab cis-regulatory-evolution
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to conservation fly by djkt on 2007-11-07 21:22:55 as ** along with 14 people and 3 groups operon tmmurali timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol csb_journal_club_public Berkeley Mycology Drosophila-Genetics-Genomics-2008
  • Adaptive Evolution of Conserved Noncoding Elements in Mammals
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e147.
    by Su Y Kim, Jonathan K Pritchard
    posted to acceleration conservation evolution mammals msa by djkt on 2007-09-07 23:45:48 as ** along with 9 people and 5 groups mattjb livingthingdan stajich Garamonfok cabbagezs Stew cisevol rrhudson bpcusack EisenLab ComplexAdaptiveSystems DSTO-CAS livingthing cis-regulatory-evolution
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
    posted to conservation development expression rodents by djkt on 2007-09-05 17:57:49 as *** along with 8 people and 3 groups balicea dchughes cwbrown lp2 cabbagezs Stew gjuggler bpcusack EisenLab G4ID Genetics-of-Gambling
  • Raising the estimate of functional human sequences.
    Genome Res (9 August 2007)
    by Michael Pheasant, John S S Mattick
    posted to acceleration annotation conservation expression rna by djkt on 2007-09-04 19:22:27 as ** along with 9 people and 2 groups jyuh jfr andersbj grahamc lp2 cabbagezs nklee ljs mimulus_99 microRNA ParkinsonLab_at_MaRS
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to conservation selection by djkt on 2007-08-20 16:42:57 as *** along with 9 people and 1 group aprasad balicea lp2 cabbagezs cisevol Minty fpattyn gjuggler bpcusack cis-regulatory-evolution
  • Fast-evolving non-coding sequences in the human genome
    Genome Biology, Vol. 8 (19 June 2007), R118.
    by Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis
    posted to acceleration conservation evolution by djkt on 2007-07-27 20:36:26 as ** along with 5 people and 2 groups Stew jlangdon cisevol iris42 bpcusack EisenLab cis-regulatory-evolution
  • Evolutionarily conserved genes preferentially accumulate introns.
    Genome Res (10 May 2007)
    by Liran Carmel, Igor B B Rogozin, Yuri I I Wolf, Eugene V V Koonin
    posted to conservation evolution intron by djkt on 2007-07-05 17:11:15 as ** along with 5 people and 2 groups balicea dchughes lilou cabbagezs xingxu G4ID Genetics-of-Gambling
  • A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing.
    Genome Res (24 May 2007)
    by Rodger B B Voelker, J Andrew A Berglund
    posted to conservation selection splicing by djkt on 2007-07-05 17:07:36 as ** along with 4 people and 2 groups dchughes olympos lilou rvoelker G4ID Genetics-of-Gambling
  • Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774.
    by Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B Brown, Peter Bickel, Ian Holmes, James C Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A Stone, Kate R Rosenbloom, James W Kent, Gerard G Bouffard, Xiaobin Guan, Nancy F Hansen, Jacquelyn R Idol, Valerie V Maduro, Baishali Maskeri, Jennifer C Mcdowell, Morgan Park, Pamela J Thomas, Alice C Young, Robert W Blakesley, Donna M Muzny, Erica Sodergren, David A Wheeler, Kim C Worley, Huaiyang Jiang, George M Weinstock, Richard A Gibbs, Tina Graves, Robert Fulton, Elaine R Mardis, Richard K Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B Jaffe, Jean L Chang, Kerstin Lindblad-Toh, Eric S Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A Field, Richard A Moore, Carrie A Matthewson, Jacqueline E Schein, Marco A Marra, Stylianos E Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D Green, Arend Sidow
    posted to annotation conservation msa by djkt on 2007-06-14 01:05:24 as ** along with 7 people and 4 groups dpollard dchughes AaronDarling ghattem Garamonfok gjuggler elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements
    Nature (14 March 2007)
    by Liana F Lareau, Maki Inada, Richard E Green, Jordan C Wengrod, Steven E Brenner
    posted to conservation rna splicing by djkt on 2007-04-19 00:35:44 as **
  • Parallel evolution of conserved noncoding elements that target a common set of developmental regulatory genes from worms to humans.
    Genome Biology, Vol. 8 (02 February 2007), R15.
    by Tanya Vavouri, Klaudia Walter, Walter R Gilks, Ben Lehner, Greg Elgar
    posted to expression development conservation by djkt on 2007-02-09 17:27:41 as ** along with 7 people and 2 groups indigoviolet dpollard adepace sujaikumar Stew cisevol smbe2008 EisenLab cis-regulatory-evolution
  • Genomic Selective Constraints in Murids
    PLoS Genetics, Vol. preprint, No. 2006. (1 October 2006)
    by Daniel Gaffney, Peter Keightley
    posted to conservation evolution msa rodents selection by djkt on 2006-10-20 20:27:57 as ***
  • Evolutionary simulations to detect functional lineage-specific genes
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1815-1822.
    by Isabelle Dupanloup, Henrik Kaessmann
    posted to acceleration conservation evolution msa phylogenetics by djkt on 2006-09-01 16:12:34 as ** along with 2 people bpcusack BioNica
  • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    Nature (16 April 2006)
    by Gill Bejerano, Craig B Lowe, Nadav Ahituv, Bryan King, Adam Siepel, Sofie R Salama, Edward M Rubin, James W Kent, David Haussler
    posted to conservation evolution indel msa by djkt on 2006-08-04 01:30:14 as read along with 6 people and 6 groups marcius dchughes nickluscombe cisevol gjuggler carlfulp G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
  • Human-zebrafish non-coding conserved elements act in vivo to regulate transcription
    Nucl. Acids Res., Vol. 33, No. 17. (22 September 2005), pp. 5437-5445.
    by Jordan T Shin, James R Priest, Ivan Ovcharenko, Amy Ronco, Rachel K Moore, Geoffrey C Burns, Calum A Macrae
    posted to conservation expression msa by djkt on 2006-08-04 01:06:17 as read along with 1 person maximilianh
  • Highly conserved non-coding sequences are associated with vertebrate development.
    PLoS Biol, Vol. 3, No. 1. (January 2005)
    by A Woolfe, M Goodson, DK Goode, P Snell, GK McEwen, T Vavouri, SF Smith, P North, H Callaway, K Kelly, K Walter, I Abnizova, W Gilks, YJ Edwards, JE Cooke, G Elgar
    posted to conservation expression msa by djkt on 2006-08-04 01:02:55 as read along with 8 people and 2 groups bryankr awoolfe sujaikumar Stew maximilianh cisevol rrhudson gelgar EisenLab cis-regulatory-evolution
  • Scanning Human Gene Deserts for Long-Range Enhancers
    Science, Vol. 302, No. 5644. (17 October 2003), 413.
    by Marcelo A Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M Rubin
    posted to conservation expression msa by djkt on 2006-08-04 01:02:14 as read along with 4 people elzodw maximilianh heliopais blobbybirdman
  • CONSERVED NON-GENIC SEQUENCES - AN UNEXPECTED FEATURE OF MAMMALIAN GENOMES
    Nat Rev Genet, Vol. 6, No. 2. (February 2005), pp. 151-157.
    by Emmanouil T Dermitzakis, Alexandre Reymond, Stylianos E Antonarakis
    posted to conservation msa by djkt on 2006-08-04 00:51:49 as read along with 1 person sujaikumar
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to conservation evolution msa phylogenetics selection by djkt on 2006-08-04 00:33:54 as read along with 16 people and 4 groups tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
  • Ultraconserved elements in the human genome.
    Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325.
    by G Bejerano, M Pheasant, I Makunin, S Stephen, WJ Kent, JS Mattick, D Haussler
    posted to conservation evolution msa selection by djkt on 2006-08-04 00:25:35 as read along with 15 people and 5 groups Ema carlfulp karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
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