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djkts library [566 articles]

Neue Artikel in djkts library ordered by importance.
  • Predicting Human Nucleosome Occupancy from Primary Sequence
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000134.
    by Shobhit Gupta, Jonathan Dennis, Robert E Thurman, Robert Kingston, John A Stamatoyannopoulos, William S Noble
    posted to prediction nucleosome epigenetics by djkt on 2008-08-22 18:17:54 as *** along with 2 people aalibes Stew
  • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    Nature (20 July 2008)
    by Julius S Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs
    posted to microbes metagenomics ecology by djkt on 2008-08-20 20:14:10 as *** along with 1 person and 1 group neils iSEEM
  • Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster
    PLoS Biology, Vol. 6, No. 8. (1 August 2008), e204.
    by Cathy Haag-Liautard, Nicole Coffey, David Houle, Michael Lynch, Brian Charlesworth, Peter D Keightley
    posted to snps molclock indel fly evolution by djkt on 2008-08-19 19:18:55 as *** along with 1 person aprasad
  • Reduced purifying selection prevails over positive selection in human copy number variant evolution
    Genome Research (2008)
    by Nguyen
    posted to sv selection human evolution by djkt on 2008-08-18 21:19:48 as ***
  • The Airborne Metagenome in an Indoor Urban Environment
    PLoS ONE, Vol. 3, No. 4. (2 April 2008), e1862.
    by Susannah G Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah H Lee, Jennifer Yap, Fei Yao, Sim T Suan, Seah K Ing, Matthew Haynes, Forest Rohwer, Chia L Wei, Patrick Tan, James Bristow, Edward M Rubin, Yijun Ruan
    posted to microbes metagenomics by djkt on 2008-08-15 17:55:03 as *** along with 1 person and 1 group semrich iSEEM
  • Genetic Variation in an Individual Human Exome
    PLoS Genet, Vol. 4, No. 8. (2008), e1000160.
    by Pauline C Ng, Samuel Levy, Jiaqi Huang, Timothy B Stockwell, Brian P Walenz, Kelvin Li, Nelson Axelrod, Dana A Busam, Robert L Strausberg, Craig J Venter
    posted to snps sequencing proteins popgen human by djkt on 2008-08-15 17:26:39 as *** along with 5 people jyuh reyez Ema caseybrown bpcusack
  • Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
    Appl. Environ. Microbiol., Vol. 67, No. 10. (1 October 2001), pp. 4399-4406.
    by Jennifer B Hughes, Jessica J Hellmann, Taylor H Ricketts, Brendan J Bohannan
    posted to review metagenomics diversity by djkt on 2008-07-24 18:27:30 as *** along with 6 people and 2 groups mcox vrich Olaf_Ilzins jmeppley Stenuite andrewirwin iSEEM Biological oceanography
  • An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566.
    by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A Eisen
    posted to rna metagenomics by djkt on 2008-07-24 18:14:38 as *** along with 1 person and 1 group skato_toyaku iSEEM
  • Metagenomics: application of genomics to uncultured microorganisms.
    Microbiol Mol Biol Rev, Vol. 68, No. 4. (December 2004), pp. 669-685.
    by J Handelsman
    posted to review microbes metagenomics by djkt on 2008-07-24 18:00:33 as *** along with 5 people and 2 groups jlgreen orzenil mcox vrich knaseanka iSEEM Green Lab
  • No effect of recombination on the efficacy of natural selection in primates
    Genome Res. (16 January 2008), gr.071548.107.
    by Kevin L Bullaughey, Molly Przeworski, Graham Coop
    posted to primates recombination selection by djkt on 2008-01-18 01:41:08 as ***
  • Viral Evolution in the Genomic Age
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278.
    by Edward C Holmes
    posted to acceleration ecology evolution phylogenetics virus by djkt on 2007-10-02 20:25:08 as *** along with 3 people dayjm dullhunk zwang
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
    posted to conservation development expression rodents by djkt on 2007-09-05 17:57:49 as *** along with 8 people and 3 groups bpcusack balicea dchughes cwbrown lp2 cabbagezs Stew gjuggler EisenLab G4ID Genetics-of-Gambling
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to conservation selection by djkt on 2007-08-20 16:42:57 as *** along with 9 people and 1 group bpcusack aprasad balicea lp2 cabbagezs cisevol Minty fpattyn gjuggler cis-regulatory-evolution
  • Identification and Characterization of Cell Type–Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome
    posted to chromatin by djkt on 2007-08-18 00:01:07 as ***
  • Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot
    posted to recombination rodents by djkt on 2007-06-22 19:48:45 as ***
  • New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome
    posted to acceleration evolution selection snps by djkt on 2007-06-19 21:04:09 as ***
  • Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
    posted to acceleration tf by djkt on 2007-05-06 06:56:47 as ***
  • Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555.
    by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, Anna Z Komisarczuk, Par G Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S Becker
    posted to evolution msa by djkt on 2007-05-03 19:30:18 as *** along with 3 people and 3 groups boudinot dchughes maximilianh Bioinformatics G4ID Genetics-of-Gambling
  • Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234.
    by Rhesus, Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, Craig J Venter, Richard K Wilson, Mark A Batzer, Carlos D Bustamante, Evan E Eichler, Matthew W Hahn, Ross C Hardison, Kateryna D Makova, Webb Miller, Aleksandar Milosavljevic, Robert E Palermo, Adam Siepel, James M Sikela, Tony Attaway, Stephanie Bell, Kelly E Bernard, Christian J Buhay, Mimi N Chandrabose, Marvin Dao, Clay Davis, Kimberly D Delehaunty, Yan Ding, Huyen H Dinh, Shannon Dugan-Rocha, Lucinda A Fulton, Ramatu A Gabisi, Toni T Garner, Jennifer Godfrey, Alicia C Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Ziad M Khan, Ewen F Kirkness, Andrew Cree, Gerald R Fowler, Sandra Lee, Lora R Lewis, Zhangwan Li, Yih-Shin Liu, Stephanie M Moore, Donna Muzny, Lynne V Nazareth, Dinh N Ngo, Geoffrey O Okwuonu, Grace Pai, David Parker, Heidie A Paul, Cynthia Pfannkoch, Craig S Pohl, Yu-Hui Rogers, San J Ruiz, Aniko Sabo, Jireh Santibanez, Brian W Schneider, Scott M Smith, Erica Sodergren, Amanda F Svatek, Teresa R Utterback, Selina Vattathil, Wesley Warren, Courtney S White, Asif T Chinwalla, Yucheng Feng, Aaron L Halpern, Ladeana W Hillier, Xiaoqiu Huang, Pat Minx, Joanne O Nelson, Kymberlie H Pepin, Xiang Qin, Granger G Sutton, Eli Venter, Brian P Walenz, John W Wallis, Kim C Worley, Shiaw-Pyng Yang, Steven M Jones, Marco A Marra, Mariano Rocchi, Jacqueline E Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, Alan R Harris, Paul Havlak, Andrew R Jackson, Huaiyang Jiang, Yue Liu, David N Messina, Yufeng Shen, Henry X Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K Konkel, Jungnam Lee, Arian F Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E Karro, Jian Ma, Brian Raney, Xinwei She, Michael J Cox, Jeffery P Demuth, Laura J Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H Kim, Jonathan R Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J Hubisz, Amit Indap, Carolin Kosiol, Bruce T Lahn, Heather A Lawson, Alison Marklein, Rasmus Nielsen, Eric J Vallender, Andrew G Clark, Betsy Ferguson, Ryan D Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G Smith, David A Wheeler, Ian Schenck, Edward V Ball, Rui Chen, David N Cooper, Belinda Giardine, Fan Hsu, James W Kent, Arthur Lesk, David L Nelson, William E O'Brien, Kay Prufer, Peter D Stenson, James C Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P Xiang, Fan Yang, Galt P Barber, David Haussler, Donna Karolchik, Andy D Kern, Robert M Kuhn, Kayla E Smith, Ann S Zwieg
    posted to genome primates by djkt on 2007-04-13 18:30:18 as *** along with 4 people and 4 groups Garamonfok dchughes stajich hpaces Bioinformatics G4ID Genetics-of-Gambling Berkeley Mycology
  • Human-Specific Changes of Genome Structure Detected by Genomic Triangulation
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 235-237.
    by RA Harris, J Rogers, A Milosavljevic
    posted to acceleration primates by djkt on 2007-04-13 18:29:44 as *** along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Genomic sweeping for hypermethylated genes
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 281-288.
    by Liang Goh, Susan K Murphy, Sayan Muhkerjee, Terrence S Furey
    posted to prediction imprinting by djkt on 2007-02-02 17:44:49 as *** along with 1 person and 1 group mgaldzic CHIP
  • Maximum likelihood inference of imprinting and allele-specific expression from EST data.
    Bioinformatics (11 October 2006)
    by Cathal Seoighe, Victoria Nembaware, Konrad Scheffler
    posted to imprinting by djkt on 2006-12-02 17:02:54 as *** along with 1 person Ayest
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as *** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago Bioinformatics UH - Computational Biology
  • Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera.
    Science, Vol. 314, No. 5799. (27 October 2006), pp. 642-645.
    by CW Whitfield, SK Behura, SH Berlocher, AG Clark, JS Johnston, WS Sheppard, DR Smith, AV Suarez, D Weaver, ND Tsutsui
    posted to evolution popgen by djkt on 2006-11-02 19:11:44 as ***
  • Genomic Selective Constraints in Murids
    PLoS Genetics, Vol. preprint, No. 2006. (1 October 2006)
    by Daniel Gaffney, Peter Keightley
    posted to conservation evolution msa rodents selection by djkt on 2006-10-20 20:27:57 as ***
  • Heterogeneous Genomic Molecular Clocks in Primates
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e163.
    by Seong-Ho Kim, Navin Elango, Charles Warden, Eric Vigoda, Soojin V Yi
    posted to acceleration molclock primates by djkt on 2006-10-10 18:11:10 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Time ordering of gene coexpression
    Biostat, Vol. 7, No. 4. (1 October 2006), pp. 569-584.
    by Xiaoyan Leng, Hans-Georg Muller
    posted to arrays clustering expression by djkt on 2006-09-28 18:23:31 as ***
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to evolution popgen proteins snps by djkt on 2006-08-07 18:18:20 as *** along with 1 person and 1 group hdopazo BioinfoCIPF
  • Copy number variation: New insights in genome diversity
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 949-961.
    by Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A Mccarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles, Nigel P Carter, Stephen W Scherer, Charles Lee
    posted to indel popgen review by djkt on 2006-08-07 18:16:31 as *** along with 7 people and 3 groups jasonflannick debasis bpb balicea dchughes jri bioguru2000 Bioinformatics G4ID Genetics-of-Gambling
  • Heterozygous carriers of Nijmegen Breakage Syndrome have a distinct gene expression phenotype
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 973-979.
    by Vivian G Cheung, Warren J Ewens
    posted to expression popgen snps by djkt on 2006-08-07 18:15:32 as ***
  • Modeling ChIP Sequencing In Silico with Applications
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000158.
    by Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein
    posted to sequencing chip-chip by djkt on 2008-08-22 18:20:29 as ** along with 3 people gdb Stew kengg
  • Gene Dosage and Gene Duplicability
    Genetics, Vol. 179 (2008), pp. 2319-2324.
    by Wenfeng Qian, Jianzhi Zhang
    posted to proteins evolution duplication by djkt on 2008-08-19 02:15:55 as **
  • Integrating biological data - the Distributed Annotation System
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Andrew Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic
    posted to db by djkt on 2008-08-18 21:16:46 as ** along with 3 people chad_davis jyuh aconesa
  • Genomic analysis of the relationship between gene expression variation and DNA polymorphism in Drosophila simulans
    Genome Biology, Vol. 9, No. 8. (2008)
    by Mara Lawniczak, Alisha Holloway, David Begun, Corbin Jones
    posted to variation popgen fly expression by djkt on 2008-08-18 21:15:41 as ** along with 3 people and 1 group cisevol caseybrown APRegier cis-regulatory-evolution
  • Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil
    Science, Vol. 309, No. 5739. (26 August 2005), pp. 1387-1390.
    by Jason Gans, Murray Wolinsky, John Dunbar
    posted to microbes metagenomics ecology diversity by djkt on 2008-08-15 18:22:43 as ** along with 4 people and 1 group jlgreen knaseanka jmeppley paleorthid iSEEM
  • Binning sequences using very sparse labels within a metagenome
    BMC Bioinformatics, Vol. 9 (28 April 2008), 215.
    by Chon-Kit K Chan, Arthur L Hsu, Saman K Halgamuge, Sen-Lin Tang
    posted to microbes metagenomics by djkt on 2008-08-15 18:13:29 as ** along with 4 people and 2 groups jlgreen werwiesel alexl mjetten iSEEM microbiology_nijmegen
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
    posted to sequencing expression by djkt on 2008-08-15 02:02:43 as ** along with 10 people and 1 group zwang ArtemPankin Ema kjglennie balicea GeeSharpMinor dh0000 caseybrown reyez oelemento Khavkin's lab
  • A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA
    Nature (09 July 2008)
    by Monika Martick, Lucas H Horan, Harry F Noller, William G Scott
    posted to rna mammals by djkt on 2008-08-13 21:09:09 as ** along with 1 person mtagaya
  • The relationship between homozygosity and the frequency of the most frequent allele
    Genetics (9 August 2008), genetics.107.084772.
    by Noah A Rosenberg, Mattias Jakobsson
    posted to popgen by djkt on 2008-08-10 17:02:15 as **
  • Comparative analysis of testis protein evolution in rodents
    Genetics (9 August 2008), genetics.107.085902.
    by Leslie M Turner, Edward B Chuong, Hopi E Hoekstra
    posted to selection rodents proteins by djkt on 2008-08-10 17:00:49 as ** along with 2 people dchughes aprasad
  • Cut thy Neighbor: Cyclic Birth and Death of Recombination Hotspots via Genetic Conflict
    Genetics (9 August 2008), genetics.107.085563.
    by Urban Friberg, William R Rice
    posted to selection recombination bgc by djkt on 2008-08-10 16:57:23 as **
  • Bayesian QTL Mapping for Multiple Traits
    Genetics (9 August 2008), genetics.108.088427.
    by Samprit Banerjee, Brian S Yandell, Nengjun Yi
    posted to qtl by djkt on 2008-08-10 16:56:04 as ** along with 1 person jyuh
  • An empirical test for branch-specific positive selection
    Genetics (9 August 2008), genetics.108.090548.
    by Gabrielle C Nickel, David L Tefft, Karrie Goglin, Mark D Adams
    posted to selection proteins human evolution by djkt on 2008-08-10 16:54:37 as **
  • Segment-based multiple sequence alignment
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192.
    by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert
    posted to msa alignment by djkt on 2008-08-09 17:19:25 as ** along with 6 people groepl chad_davis aprasad Ema zwang APRegier
  • Analysis of segmental duplications via duplication distance
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i133-138.
    by Crystal L Kahn, Benjamin J Raphael
    posted to evolution duplication by djkt on 2008-08-09 17:17:07 as **
  • Predicting Functional Regulatory Polymorphisms.
    Bioinformatics (Oxford, England) (18 June 2008)
    by Ali Torkamani, Nicholas J J Schork
    posted to tf snps prediction by djkt on 2008-08-09 17:13:40 as ** along with 2 people ramensky jyuh
  • Metabolic changes in schizophrenia and human brain evolution
    Genome Biology, Vol. 9 (05 August 2008), R124.
    by Philipp Khaitovich, Helen E Lockstone, Matthew T Wayland, Tsz M Tsang, Samantha D Jayatilaka, Arfu J Guo, Jie Zhou, Mehmet Somel, Laura W Harris, Elaine Holmes, Svante Paabo, Sabine Bahn
    posted to schizophrenia evolution by djkt on 2008-08-09 05:18:52 as ** along with 1 person balicea
  • The ethics of characterizing difference: guiding principles on using racial categories in human genetics
    Genome Biology, Vol. 9 (15 July 2008), 404.
    by Sandra S Lee, Joanna Mountain, Barbara Koenig, Russ Altman, Melissa Brown, Albert Camarillo, Luca Cavalli-Sforza, Mildred Cho, Jennifer Eberhardt, Marcus Feldman, Richard Ford, Henry Greely, Roy King, Hazel Markus, Debra Satz, Matthew Snipp, Claude Steele, Peter Underhill
    posted to popgen human ethics by djkt on 2008-08-09 05:17:21 as ** along with 2 people aristos81 jasonbobe
  • Evolutionary Convergence on Highly-Conserved 3′ Intron Structures in Intron-Poor Eukaryotes and Insights into the Ancestral Eukaryotic Genome
    PLoS Genet, Vol. 4, No. 8. (2008), e1000148.
    by Manuel Irimia, Scott W Roy
    posted to intron evolution by djkt on 2008-08-08 19:21:10 as **
  • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    PNAS
    by Biddle
    posted to microbes metagenomics by djkt on 2008-08-08 02:24:01 as ** along with 1 person and 2 groups jlgreen iSEEM Green Lab
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