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djkts library [383 articles]

Neue Artikel in djkts Bibliothek.
  • Nucleosome organization in the Drosophila genome.
    Nature (13 April 2008)
    by Travis N N Mavrich, Cizhong Jiang, Ilya P P Ioshikhes, Xiaoyong Li, Bryan J J Venters, Sara J J Zanton, Lynn P P Tomsho, Ji Qi, Robert L L Glaser, Stephan C C Schuster, David S S Gilmour, Istvan Albert, B Franklin F Pugh
    posted to fly chromatin by djkt on 2008-05-14 21:05:54 as ** along with 2 people megraw nklee
  • Transcription induces strand specific mutations at the 5' end of human genes
    Genome Res. (7 May 2008), gr.076570.108.
    by Paz Polak, Peter F Arndt
    posted to expression bgc by djkt on 2008-05-13 16:50:45 as **
  • The Impact of Recombination on Nucleotide Substitutions in the Human Genome
    posted to recombination bgc by djkt on 2008-05-10 04:02:43 as **
  • Viral Population Estimation Using Pyrosequencing
    posted to sequencing metagenomics by djkt on 2008-05-10 04:01:09 as **
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to sv popgen by djkt on 2008-05-01 18:41:59 as ** along with 9 people and 1 group Ema hpaces aprasad kaniko psique shikin balicea dchughes bpb GeneGo
  • Exposing the fitness contribution of duplicated genes
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 676-681.
    by Alexander Deluna, Kalin Vetsigian, Noam Shoresh, Matthew Hegreness, Maritrini Colon-Gonzalez, Sharon Chao, Roy Kishony
    posted to yeast sv selection by djkt on 2008-04-28 21:09:09 as ** along with 1 person caseybrown
  • Interpreting principal component analyses of spatial population genetic variation
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 646-649.
    by John Novembre, Matthew Stephens
    posted to popgen by djkt on 2008-04-28 21:07:19 as **
  • Biological sequence classification utilizing positive and unlabeled data.
    Bioinformatics (14 March 2008)
    by Yuanyuan Xiao, Mark R R Segal
    posted to prediction by djkt on 2008-04-25 19:39:22 as ** along with 3 people jyuh mdstobbe eckart_bindewald
  • Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
    Science (27 March 2008), 1155174.
    by Tom Walsh, Jon M Mcclellan, Shane E Mccarthy, Anjene M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abishek Bhandari, Sunday M Stray, Caitlin F Rippey, Patricia Roccanova, Vlad Makarov, B Lakshmi, Robert L Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E Eichler, Paul S Meltzer, Stanley F Nelson, Andrew B Singleton, Ming K Lee, Judith L Rapoport, Mary-Claire King, Jonathan Sebat
    posted to sv schizophrenia popgen by djkt on 2008-04-25 17:22:54 as ** along with 7 people and 1 group renatomilani lisa1 giovanni sekulerlab GustavoLacerda MWagner applebyb VisionLab
  • Complex genetic interactions underlying expression differences between Drosophila races: Analysis of chromosome substitutions
    Proceedings of the National Academy of Sciences (22 April 2008), 0711774105.
    by Hurng-Yi Wang, Yonggui Fu, Mary S Mcpeek, Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien Wu, Chung-I Wu
    posted to qtl fly expression evolution by djkt on 2008-04-24 17:31:11 as ** along with 2 people brant maximilianh
  • Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2417-2427.
    by Badri Padhukasahasram, Paul Marjoram, Jeffrey D Wall, Carlos D Bustamante, Magnus Nordborg
    posted to simulation recombination popgen by djkt on 2008-04-23 03:22:29 as ** along with 2 people schaffner364 badripk
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    posted to evolution msa phylogenetics prokaryotes by djkt on 2008-04-19 05:19:34 as **
  • Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
    posted to evolution fly msa proteins by djkt on 2008-04-19 05:18:42 as **
  • Gene regulation: Repositioning tunes expression
    Nature Reviews Genetics, Vol. 9, No. 5., pp. 322-323.
    by Louisa Flintoft
    posted to evolution expression tf by djkt on 2008-04-19 04:52:41 as **
  • Transposable elements and the evolution of regulatory networks.
    Nat Rev Genet (27 March 2008)
    by Cédric Feschotte
    posted to evolution sv tf by djkt on 2008-04-19 04:52:01 as ** along with 5 people and 1 group roys cmzmasek jonsta247 bootsy idonaldson BergmanLab
  • Analysis of Chimpanzee History Based on Genome Sequence Alignments
    posted to evolution popgen primates by djkt on 2008-04-19 01:42:05 as **
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
    posted to human sequencing by djkt on 2008-04-16 20:24:55 as ** along with 8 people and 2 groups Huub_odc bpb orzenil dullhunk ramensky psique caseybrown melting microbiology_nijmegen parkinson's disease references
  • Identifying Selected Regions from Heterozygosity and Divergence Using a Light-Coverage Genomic Dataset from Two Human Populations
    posted to human popgen sequencing by djkt on 2008-04-16 19:21:31 as **
  • Higher origination and extinction rates in larger mammals
    Proceedings of the National Academy of Sciences (15 April 2008), 0709763105.
    by Lee H Liow, Mikael Fortelius, Ella Bingham, Kari Lintulaakso, Heikki Mannila, Larry Flynn, Nils C Stenseth
    posted to evolution phylogenetics primates by djkt on 2008-04-16 18:08:27 as **
  • Gene–Environment Interaction in Yeast Gene Expression
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e83.
    by Erin N Smith, Leonid Kruglyak
    posted to expression popgen yeast by djkt on 2008-04-15 22:25:53 as **
  • Extremely Intron-Rich Genes in the Alveolate Ancestors Inferred with a Flexible Maximum-Likelihood Approach
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 903-911.
    by Miklos Csuros, Igor B Rogozin, Eugene V Koonin
    posted to evolution intron by djkt on 2008-04-14 20:38:57 as **
  • A Test of the Null Model for 5' UTR Evolution Based on GC Content
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 801-804.
    by Max Reuter, Jan Engelstadter, Pierre Fontanillas, Laurence D Hurst
    posted to bgc evolution expression by djkt on 2008-04-14 20:37:31 as **
  • ModuleMiner: improved computational detection of cis-regulatory modules. Different modes of gene regulation in embryonic development and adult tissues?
    Genome Biology, Vol. 9, No. 4. (2008)
    by Peter Van Loo, Stein Aerts, Bernard Thienpont, Bart De Moor, Yves Moreau, Peter Marynen
    posted to development tf by djkt on 2008-04-11 18:55:32 as ** along with 4 people brant natstreet maximilianh phoenixzxl
  • Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
    Genome Biology, Vol. 9 (12 March 2008), R54.
    by Ana C Marques, Nicolas Vinckenbosh, David Brawand, Henrik Kaessmann
    posted to evolution localization proteins by djkt on 2008-04-11 18:54:02 as ** along with 2 people Schmidtc fernan
  • Functional metagenomic profiling of nine biomes
    Nature (12 March 2008)
    by Elizabeth A Dinsdale, Robert A Edwards, Dana Hall, Florent Angly, Mya Breitbart, Jennifer M Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren Mcdaniel, Mary A Moran, Karen E Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R Brito, Yijun Ruan, Brandon K Swan, Rick Stevens, David L Valentine, Rebecca V Thurber, Linda Wegley, Bryan A White, Forest Rohwer
    posted to metagenomics by djkt on 2008-04-02 22:46:46 as ** along with 9 people and 3 groups oelemento vaulot vrich jmeppley alexisfjdufresne bluto jyuh neils kinestetika Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to expression fly popgen qtl by djkt on 2008-04-02 05:07:15 as ** along with 3 people and 1 group mimulus_99 brant stajich EisenLab
  • Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80.
    by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann
    posted to chromosome evolution mammals sex by djkt on 2008-04-01 19:26:09 as **
  • Hierarchical False Discovery RateControlling Methodology
    Journal of the American Statistical Association, Vol. 103, No. 481. (March 2008), pp. 309-316.
    by Yekutieli, Daniel
    posted to mtp by djkt on 2008-03-31 20:47:29 as **
  • A Uniform Improvement of Bonferroni-Type Tests by Sequential Tests
    Journal of the American Statistical Association, Vol. 103, No. 481. (March 2008), pp. 299-308.
    by Posch, Martin, Futschik, Andreas
    posted to mtp by djkt on 2008-03-31 20:46:49 as **
  • Global Chromatin Domain Organization of the Drosophila Genome
    posted to epigenetics evolution expression fly by djkt on 2008-03-28 22:35:13 as **
  • Nutritional Control of Reproductive Status in Honeybees via DNA Methylation.
    Science (13 March 2008)
    by R Kucharski, J Maleszka, S Foret, R Maleszka
    posted to epigenetics by djkt on 2008-03-28 16:56:48 as ** along with 8 people and 1 group stevanspringer aprasad kengg epigenetics aubinhon faion kjglennie sunhwan Integrative_biology_behavior
  • Evolution of Eukaryotic Transcription Circuits
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799.
    by Brian B Tuch, Hao Li, Alexander D Johnson
    posted to evolution expression by djkt on 2008-03-28 16:54:41 as ** along with 1 person AbnerCYH
  • Bayesian models based on test statistics for multiple hypothesis testing problems.
    Bioinformatics (1 February 2008)
    by Yuan Ji, Yiling Lu, Gordon B B Mills
    posted to mtp by djkt on 2008-03-27 16:41:58 as ** along with 8 people craigwilson06 jyuh jfr shigepong GeeSharpMinor bertelsen mailund maralena
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to expression qtl rodents by djkt on 2008-03-27 16:31:23 as ** along with 8 people and 1 group natstreet sanchezbuelna raiyar lp2 jo_davies shikin caseybrown ptrobajo GeneGo
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to expression qtl by djkt on 2008-03-27 16:27:44 as ** along with 8 people and 1 group natstreet sanchezbuelna lp2 jo_davies shikin caseybrown ptrobajo vplagnol GeneGo
  • Adding pathogens by genomic subtraction
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 380-382.
    by Laura Macconaill, Matthew Meyerson
    posted to metagenomics review virus by djkt on 2008-03-27 16:23:43 as **
  • Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells
    posted to expression by djkt on 2008-03-21 18:47:52 as **
  • Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65.
    by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R Iyer
    posted to epigenetics expression by djkt on 2008-03-18 21:12:15 as ** along with 1 person lusk
  • Loss of Egg Yolk Genes in Mammals and the Origin of Lactation and Placentation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e63.
    by David Brawand, Walter Wahli, Henrik Kaessmann
    posted to evolution lactation mammals placenta by djkt on 2008-03-18 21:10:50 as **
  • From Classical Genetics to Quantitative Genetics to Systems Biology: Modeling Epistasis
    posted to expression qtl by djkt on 2008-03-14 21:43:43 as ** along with 1 person braingrind
  • Role of Duplicate Genes in Robustness against Deleterious Human Mutations
    posted to evolution snps sv by djkt on 2008-03-14 21:42:24 as **
  • ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 768-774.
    by Guillem Rigaill, Philippe Hupe, Anna Almeida, Philippe La Rosa, Jean-Philippe Meyniel, Charles Decraene, Emmanuel Barillot
    posted to arrays snps by djkt on 2008-03-13 16:40:46 as **
  • Estimation and assessment of raw copy numbers at the single locus level
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 759-767.
    by H Bengtsson, R Irizarry, B Carvalho, TP Speed
    posted to arrays snps by djkt on 2008-03-13 16:40:00 as ** along with 1 person Ema
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
    posted to epigenetics sequencing by djkt on 2008-03-12 19:46:48 as ** along with 4 people ghattem epigenetics mdimon slonik
  • Genetic basis of fitness differences in natural populations
    Nature, Vol. 452, No. 7184. (13 March 2008), pp. 169-175.
    by Hans Ellegren, Ben C Sheldon
    posted to ecology popgen qtl variation by djkt on 2008-03-12 19:45:01 as **
  • Patterson et al. reply
    Nature, Vol. 452, No. 7184. (13 March 2008), pp. E4-E4.
    by Nick Patterson, Daniel J Richter, Sante Gnerre, Eric S Lander, David Reich
    posted to primates speciation by djkt on 2008-03-12 19:44:00 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Complex speciation of humans and chimpanzees
    Nature, Vol. 452, No. 7184. (13 March 2008), pp. E3-E4.
    by John Wakeley
    posted to primates speciation by djkt on 2008-03-12 19:43:32 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Genomic degradation of a young Y chromosome in Drosophila miranda
    Genome Biology, Vol. 9, No. 2. (2008)
    by Doris Bachtrog, Emily Hom, Karen Wong, Xulio Maside, Pieter de Jong
    posted to evolution fly sv by djkt on 2008-03-12 15:38:33 as ** along with 1 person jjheck
  • Functional protein divergence in the evolution of Homo sapiens
    Genome Biology, Vol. 9 (15 February 2008), R33.
    by Nuria Lopez-Bigas, Subhajyoti De, Sarah A Teichmann
    posted to evolution primates proteins by djkt on 2008-03-12 15:35:30 as ** along with 4 people aalibes grahamc biomcgary zhanglab
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
    posted to evolution indel by djkt on 2008-03-12 15:32:51 as ** along with 4 people brant lusk biomcgary gjuggler
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