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discreteonyxorbs library [77 articles]

Neue Artikel in discreteonyxorbs library ordered by importance.
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to activation activator arabinose arac architecture bacteria bioinformatics biology circuits coli combinatorial comparative experimental factor gene initiation interaction lac laci library logic luciferase model noncoding operator organization polymerase prokaryote promoter protein regulation repression repressor sequence synthetic transcription by discreteonyxorb on 2007-11-13 20:48:20 as ***** along with 14 people and 2 groups tresch Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang cabbagezs Ema EisenLab SynBioSys
  • Altered DNA contacts made by a mutant AraC protein
    Nucl. Acids Res., Vol. 13, No. 14. (25 July 1985), pp. 5019-5026.
    by Alan Brunelle, William Hendrickson, Robert Schleif
    posted to no-tag by discreteonyxorb on 2007-10-13 13:45:17 as *****
  • Programmed population control by cell-cell communication and regulated killing.
    Nature, Vol. 428, No. 6985. (22 April 2004), pp. 868-871.
    by L You, RS Cox, R Weiss, FH Arnold
    posted to no-tag by discreteonyxorb on 2007-07-08 04:29:52 as ***** along with 5 people rklancer tuck johncumbers dbikard margaritis
  • Engineered gene circuits.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 224-230.
    by J Hasty, D McMillen, JJ Collins
    posted to biology review synthetic by discreteonyxorb on 2007-06-18 22:39:06 as ***** along with 5 people rklancer lna balicea sharatjv dbikard
  • Synergistic Activation of Transcription by Bacteriophage λ cl Protein and E. coli cAMP Receptor Protein
    by Keith J Joung, Deanna M Koepp, Ann Hochschild
    posted to activation architecture bacteria coli combinatorial crp initiation logic polymerase promoter regulation transcription by discreteonyxorb on 2007-05-11 18:56:55 as *****
  • Mechanism and control of transcription initiation in prokaryotes.
    Annu Rev Biochem, Vol. 54 (1985), pp. 171-204.
    by WR McClure
    posted to activation architecture bacteria bioinformatics combinatorial initiation lac polymerase promoter regulation repression sequence transcription by discreteonyxorb on 2007-05-04 19:19:17 as *****
  • Compilation and analysis of Escherichia coli promoter DNA sequences.
    Nucleic Acids Res, Vol. 11, No. 8. (25 April 1983), pp. 2237-2255.
    by DK Hawley, WR McClure
    posted to activation bioinformatics regulation repression transcription by discreteonyxorb on 2007-05-02 06:25:59 as *****
  • Transcriptional regulation by the numbers: applications.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 125-135.
    by L Bintu, NE Buchler, HG Garcia, U Gerland, T Hwa, J Kondev, T Kuhlman, R Phillips
    posted to bacteria combinatorial lac model promoter theory transcription by discreteonyxorb on 2007-04-01 00:59:33 as ***** along with 5 people and 1 group ihpark imouthesmp dpollard madhadron dquest EisenLab
  • Transcriptional regulation by the numbers: models.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 116-124.
    by L Bintu, NE Buchler, HG Garcia, U Gerland, T Hwa, J Kondev, R Phillips
    posted to bacteria combinatorial lac model theory transcription by discreteonyxorb on 2007-04-01 00:58:53 as ***** along with 4 people ihpark imouthesmp madhadron dquest
  • On schemes of combinatorial transcription logic
    PNAS, Vol. 100, No. 9. (29 April 2003), pp. 5136-5141.
    by Nicolas E Buchler, Ulrich Gerland, Terence Hwa
    posted to combinatorial logic model promoter theory transcription by discreteonyxorb on 2007-04-01 00:39:39 as ***** along with 2 people balajis olympos
  • Dual regulation of the paraquat-inducible gene pqi-5 by SoxS and RpoS in Escherichia coli.
    Mol Microbiol, Vol. 22, No. 1. (October 1996), pp. 53-61.
    by YS Koh, JH Roe
    posted to architecture bacteria combinatorial factor gene operator organization by discreteonyxorb on 2007-09-19 21:35:51 as ****
  • Escherichia coli one- and two-hybrid systems for the analysis and identification of protein-protein interactions.
    Methods, Vol. 20, No. 1. (January 2000), pp. 80-94.
    by JC Hu, MG Kornacker, A Hochschild
    posted to interaction logic repressor transcription by discreteonyxorb on 2007-06-08 03:51:12 as ****
  • AraC protein can activate transcription from only one position and when pointed in only one direction.
    J Mol Biol, Vol. 231, No. 2. (20 May 1993), pp. 205-218.
    by T Reeder, R Schleif
    posted to activation arabinose arac architecture bacteria coli combinatorial crp initiation polymerase promoter transcription by discreteonyxorb on 2007-05-03 22:31:05 as ****
  • Enhancement of RNA Polymerase Binding to Promoters by a Transcriptional Activator, OmpR, in Escherichia coli: Its Positive and Negative Effects on Transcription
    PNAS, Vol. 87, No. 15. (1 August 1990), pp. 5940-5944.
    by K Tsung, Re Brissette, M Inouye
    posted to activation in repression transcription vitro by discreteonyxorb on 2007-05-02 06:10:39 as ****
  • Evolution of transcription factors and the gene regulatory network in Escherichia coli.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003), pp. 1234-1244.
    by M Madan Babu, SA Teichmann
    posted to activation activator architecture bacteria bioinformatics combinatorial crp gene interaction prokaryote promoter protein regulation by discreteonyxorb on 2007-09-25 02:27:35 as *** along with 3 people LeightonP hununu kaarsinogen
  • Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter.
    Mol Microbiol, Vol. 34, No. 3. (November 1999), pp. 431-441.
    by RG Martin, WK Gillette, S Rhee, JL Rosner
    posted to activation activator architecture logic organization polymerase prokaryote regulation reporter transcription by discreteonyxorb on 2007-09-19 21:46:21 as ***
  • Recognition Helices of lac and lambda Repressor are Oriented in opposite Directions and Recognize Similar DNA Sequences
    PNAS, Vol. 85, No. 21. (1 November 1988), pp. 7947-7951.
    by Norbert Lehming, Jurgen Sartorius, Stefan Oehler, Brigitte V Wilcken-Bergmann, Benno Muller-Hill
    posted to initiation laci promoter transcription by discreteonyxorb on 2007-06-18 06:58:56 as ***
  • Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
    Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1365-1372.
    by Stephen S Fong, Andrew R Joyce, Bernhard O Palsson
    posted to bacteria evolution sequencing by discreteonyxorb on 2007-06-14 20:48:50 as ***
  • Selection for Unequal Densities of σ70 Promoter-Like Signals in Different Regions of Large Bacterial Genomes
    PLoS Genetics, Vol. 2, No. 11. (1 November 2006), e185.
    by Araceli M Huerta, Pilar M Francino, Enrique Morett, Julio Collado-Vides
    posted to bioinformatics comparative noncoding by discreteonyxorb on 2007-05-27 22:46:49 as *** along with 2 people and 1 group icases Retchless TNT
  • Illuminating the detection chain of bacterial bioreporters
    Environmental Microbiology, Vol. 6, No. 10. (2004), pp. 1005-1020.
    by Jan R van der Meer, David Tropel, Marco Jaspers
    posted to gfp luciferase reporters by discreteonyxorb on 2007-05-22 05:38:39 as ***
  • Activation of multiple antibiotic resistance and binding of stress-inducible promoters by Escherichia coli Rob protein.
    J Bacteriol, Vol. 177, No. 7. (April 1995), pp. 1655-1661.
    by RR Ariza, Z Li, N Ringstad, B Demple
    posted to no-tag by discreteonyxorb on 2007-09-25 08:33:50 as **
  • Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication.
    J Bacteriol, Vol. 178, No. 9. (May 1996), pp. 2507-2513.
    by KW Jair, X Yu, K Skarstad, B Thöny, N Fujita, A Ishihama, RE Wolf
    posted to no-tag by discreteonyxorb on 2007-09-25 08:33:38 as ** along with 1 person jstajic
  • Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob.
    J Bacteriol, Vol. 179, No. 23. (December 1997), pp. 7410-7419.
    by RG Martin, JL Rosner
    posted to no-tag by discreteonyxorb on 2007-09-25 08:33:15 as **
  • Promoter discrimination by the related transcriptional activators MarA and SoxS: differential regulation by differential binding.
    Mol Microbiol, Vol. 35, No. 3. (February 2000), pp. 623-634.
    by RG Martin, WK Gillette, JL Rosner
    posted to no-tag by discreteonyxorb on 2007-09-25 08:31:33 as ** along with 1 person jstajic
  • Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data.
    Mol Microbiol, Vol. 44, No. 6. (June 2002), pp. 1611-1624.
    by RG Martin, JL Rosner
    posted to no-tag by discreteonyxorb on 2007-09-25 04:40:35 as **
  • MarA, SoxS and Rob function as virulence factors in an Escherichia coli murine model of ascending pyelonephritis
    Microbiology, Vol. 152, No. 12. (1 December 2006), pp. 3643-3650.
    by Paul Casaz, Lynne K Garrity-Ryan, David Mckenney, Caroline Jackson, Stuart B Levy, Ken S Tanaka, Michael N Alekshun
    posted to activation antibiotic combinatorial promoter regulation resistance by discreteonyxorb on 2007-09-25 03:41:23 as **
  • Dynamic diversity in drug discovery: Putting small-molecule evolution to work
    Drug Discovery Today, Vol. 5, No. 2. (1 February 2000), pp. 67-75.
    by Charles Karan, Benjamin L Miller
    posted to no-tag by discreteonyxorb on 2007-07-29 02:32:21 as **
  • The roles of residues 5 and 9 of the recognition helix of Lac repressor in lac operator binding.
    J Mol Biol, Vol. 218, No. 2. (20 March 1991), pp. 313-321.
    by J Sartorius, N Lehming, B Kisters-Woike, B von Wilcken-Bergmann, B Müller-Hill
    posted to bacteria coli consensus by discreteonyxorb on 2007-06-18 07:02:19 as **
  • Green fluorescent protein as a reporter of transcriptional activity in a prokaryotic system.
    Methods Enzymol, Vol. 305 (2000), pp. 499-513.
    by DA Siegele, L Campbell, JC Hu
    posted to gfp reporter by discreteonyxorb on 2007-06-08 04:13:12 as **
  • Common history at the origin of the position-function correlation in transcriptional regulators in archaea and bacteria.
    J Mol Evol, Vol. 53, No. 3. (September 2001), pp. 172-179.
    by E Pérez-Rueda, J Collado-Vides
    posted to activation factor repression by discreteonyxorb on 2007-06-04 23:20:34 as **
  • Congruent evolution of different classes of non-coding DNA in prokaryotic genomes.
    Nucleic Acids Res, Vol. 30, No. 19. (1 October 2002), pp. 4264-4271.
    by IB Rogozin, KS Makarova, DA Natale, AN Spiridonov, RL Tatusov, YI Wolf, J Yin, EV Koonin
    posted to no-tag by discreteonyxorb on 2007-05-28 08:24:32 as **
  • Distribution of minigenes in the bacteriophage lambda chromosome.
    Gene, Vol. 329 (31 March 2004), pp. 115-124.
    by NA Oviedo, H Salgado, J Collado-Vides, G Guarneros
    posted to bioinformatics experimental library screen by discreteonyxorb on 2007-05-27 22:44:55 as ** along with 1 person and 1 group vwchan beta
  • Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons
    Nucleic Acids Research, Vol. 33, No. 8. (2005), pp. 2521-2530.
    by Sarath C Janga, Julio Collado-Vides, Gabriel Moreno-Hagelsieb
    posted to algorithm bioinformatics by discreteonyxorb on 2007-05-27 22:42:16 as **
  • Analysis of the cellular functions of Escherichia coli operons and their conservation in Bacillus subtilis.
    J Mol Evol, Vol. 55, No. 2. (August 2002), pp. 211-221.
    by A de Daruvar, J Collado-Vides, A Valencia
    posted to bioinformatics gene organization by discreteonyxorb on 2007-05-27 22:41:14 as ** along with 1 person nsamways
  • Grammatical model of the regulation of gene expression.
    Proc Natl Acad Sci U S A, Vol. 89, No. 20. (15 October 1992), pp. 9405-9409.
    by J Collado-Vides
    posted to promoter regulation theory by discreteonyxorb on 2007-05-27 22:34:00 as ** along with 3 people and 1 group irenas andytseng maximilianh dbk-lab
  • A multifunctional gene (tetR) controls Tn10-encoded tetracycline resistance.
    J Bacteriol, Vol. 150, No. 2. (May 1982), pp. 633-642.
    by CF Beck, R Mutzel, J Barbé, W Müller
    posted to promoter repressor by discreteonyxorb on 2007-05-25 02:46:09 as **
  • Interaction network containing conserved and essential protein complexes in Escherichia coli
    Nature, Vol. 433, No. 7025. (03 February 2005), pp. 531-537.
    by Gareth Butland, Jose M Peregrin-Alvarez, Joyce Li, Wehong Yang, Xiaochun Yang, Veronica Canadien, Andrei Starostine, Dawn Richards, Bryan Beattie, Nevan Krogan, Michael Davey, John Parkinson, Jack Greenblatt, Andrew Emili
    posted to no-tag by discreteonyxorb on 2007-05-23 01:17:44 as ** along with 6 people snuppepuppan karbak bjorns balajis BarrosH gcalda
  • Synergistic transcription activation: a dual role for CRP in the activation of an Escherichia coli promoter depending on MalT and CRP.
    EMBO J, Vol. 19, No. 19. (2 October 2000), pp. 5222-5232.
    by E Richet
    posted to no-tag by discreteonyxorb on 2007-05-23 01:16:48 as **
  • A simple mechanism for co-dependence on two activators at an Escherichia coli promoter.
    EMBO J, Vol. 20, No. 24. (17 December 2001), pp. 7160-7167.
    by JT Wade, TA Belyaeva, EI Hyde, SJ Busby
    posted to no-tag by discreteonyxorb on 2007-05-23 01:16:06 as **
  • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    Cell, Vol. 79, No. 5. (2 December 1994), pp. 743-746.
    by Steve Busby, Richard H Ebright
    posted to no-tag by discreteonyxorb on 2007-05-23 01:15:12 as **
  • A biophysical approach to transcription factor binding site discovery.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2381-2390.
    by M Djordjevic, AM Sengupta, BI Shraiman
    posted to no-tag by discreteonyxorb on 2007-05-23 01:14:00 as ** along with 2 people xili03 dquest
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
    J Mol Biol, Vol. 193, No. 4. (20 February 1987), pp. 723-750.
    by OG Berg, PH von Hippel
    posted to no-tag by discreteonyxorb on 2007-05-23 01:10:47 as ** along with 7 people and 2 groups zambujo brant jjray indigoviolet lusk cisevol Ema EisenLab cis-regulatory-evolution
  • The OR control system of bacteriophage lambda : A physical-chemical model for gene regulation
    Journal of Molecular Biology, Vol. 181, No. 2. (20 January 1985), pp. 211-230.
    by Madeline A Shea, Gary K Ackers
    posted to no-tag by discreteonyxorb on 2007-05-23 01:08:25 as **
  • Design of genetic networks with specified functions by evolution in silico.
    Proc Natl Acad Sci U S A, Vol. 101, No. 2. (13 January 2004), pp. 580-585.
    by P François, V Hakim
    posted to no-tag by discreteonyxorb on 2007-05-23 01:03:03 as ** along with 5 people mjoach rklancer eldan monod dbikard
  • Some repressors of bacterial transcription
    Current Opinion in Microbiology, Vol. 1, No. 2. (April 1998), pp. 145-151.
    by Benno Muller-Hill
    posted to no-tag by discreteonyxorb on 2007-05-23 01:01:31 as **
  • Adaptive evolution of transcription factor binding sites.
    BMC Evol Biol, Vol. 4, No. 1. (28 October 2004)
    by J Berg, S Willmann, M Lässig
    posted to no-tag by discreteonyxorb on 2007-05-23 01:00:31 as ** along with 3 people and 1 group kaarsinogen jjray cisevol cis-regulatory-evolution
  • Activation and Repression of Transcription by Differential Contact: Two Sides of a Coin
    J. Biol. Chem., Vol. 273, No. 23. (5 June 1998), pp. 14059-14062.
    by Siddhartha Roy, Susan Garges, Sankar Adhya
    posted to no-tag by discreteonyxorb on 2007-05-23 00:57:51 as **
  • Protein-Protein Contacts that Activate and Repress Prokaryotic Transcription
    Cell, Vol. 92, No. 5. (6 March 1998), pp. 597-600.
    by Ann Hochschild, Simon L Dove
    posted to no-tag by discreteonyxorb on 2007-05-23 00:53:48 as **
  • Mechanisms of transcriptional repression
    Current Opinion in Microbiology, Vol. 4, No. 2. (1 April 2001), pp. 145-151.
    by Fernando Rojo
    posted to no-tag by discreteonyxorb on 2007-05-23 00:46:29 as **
  • Functional determinants of transcription factors in Escherichia coli: protein families and binding sites
    Trends in Genetics, Vol. 19, No. 2. (February 2003), pp. 75-79.
    by Madan, Sarah A Teichmann
    posted to activation arac architecture bioinformatics coli initiation operator polymerase promoter regulation repression sequence transcription by discreteonyxorb on 2007-05-23 00:26:54 as **
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