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dandamans library [199 articles]

Neue Artikel in dandamans library ordered by importance.
  • Early Evolution of Land Plants: Phylogeny, Physiology, and Ecology of the Primary Terrestrial Radiation
    Annual Review of Ecology and Systematics, Vol. Vol. 29 (1998), pp. 263-292.
    by Richard M Bateman, Peter R Crane, William A Dimichele, Paul R Kenrick, Nick P Rowe, Thomas Speck, William E Stein
    posted to evolution by dandaman on 2007-11-09 09:54:20 as **** along with 1 group Climate Change and Forests
  • The Biological Big Bang model for the major transitions in evolution
    Biology Direct, Vol. 2 (20 August 2007), 21.
    by Eugene V Koonin
    posted to evolution by dandaman on 2007-11-02 10:57:04 as **** along with 3 people and 1 group kinestetika vishpool Fin microbiology_nijmegen
  • Identification of homologs in insignificant BLAST hits by exploiting extrinsic gene properties
    BMC Bioinformatics, Vol. 8 (21 September 2007), 356.
    by Jos Boekhorst, Berend Snel
    posted to blast filtering homology search by dandaman on 2007-11-02 08:58:29 as **** along with 2 people eckart_bindewald julesyoo
  • Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
    Trends in Genetics, Vol. 23, No. 3. (March 2007), pp. 108-112.
    by Marie Semon, Kenneth H Wolfe
    posted to gene_evolution genome_duplication genome_evolution wgd by dandaman on 2008-02-15 10:39:28 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
    Genome Res., Vol. 16, No. 7. (1 July 2006), pp. 934-946.
    by Brian C Thomas, Brent Pedersen, Michael Freeling
    posted to gene_evolution genome_duplication genome_evolution homeologs wgd by dandaman on 2008-02-15 10:36:43 as ***
  • Consequences of genome duplication
    Current Opinion in Genetics & Development, Vol. 17, No. 6. (December 2007), pp. 505-512.
    by Marie Semon, Kenneth H Wolfe
    posted to gene_evolution genome_duplication wgd by dandaman on 2008-02-15 10:21:01 as *** along with 3 people alhufton dchughes echinotrix
  • Reconstructing patterns of reticulate evolution in plants
    Am. J. Bot., Vol. 91, No. 10. (1 September 2004), pp. 1700-1708.
    by Randal C Linder, Loren H Rieseberg
    posted to concerted_evolution evolution reticulation_events by dandaman on 2008-02-11 15:30:05 as ***
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417.
    by Antonis Rokas
    posted to alignment by dandaman on 2008-02-11 14:55:04 as *** along with 7 people bpcusack gjuggler operon dayjm cjeans lilou renatomilani
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment by dandaman on 2008-02-11 14:54:49 as *** along with 24 people and 2 groups bpcusack pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Rapid rates of lineage-specific gene duplication and deletion in the alpha-globin gene family
    Mol Biol Evol (4 January 2008), msn004.
    by Federico G Hoffmann, Juan C Opazo, Jay F Storz
    posted to concerted_evolution gene_conversion by dandaman on 2008-01-10 16:06:30 as ***
  • Evaluation of Methods for Detecting Recombination from DNA Sequences: Empirical Data
    Mol Biol Evol, Vol. 19, No. 5. (1 May 2002), pp. 708-717.
    by David Posada
    posted to gene_conversion recombination by dandaman on 2008-01-10 15:39:50 as *** along with 2 people jmeppley treangen
  • Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data.
    Genome Res, Vol. 17, No. 2. (February 2007), pp. 184-191.
    by AR Ganley, T Kobayashi
    posted to concerted_evolution gene_conversion by dandaman on 2008-01-10 11:00:31 as *** along with 2 people bjorns dmc
  • Gene Conversion and the Evolution of Three Leucine-Rich Repeat Gene Families in Arabidopsis thaliana
    Molecular Biology and Evolution, Vol. 22, No. 12. (December 2005), pp. 2444-2456.
    by Mariana Mondragon-Palomino, Brandon S Gaut
    posted to gene_conversion by dandaman on 2008-01-10 08:05:54 as ***
  • Euglena Light-Harvesting Complexes are Encoded by Multifarious Polyprotein mRNAs that Evolve in Concert
    Mol Biol Evol (18 October 2007), msm232.
    by Adam G Koziol, Dion G Durnford
    posted to gene_conversion lhc by dandaman on 2008-01-09 16:43:43 as ***
  • New Insights into the Nature and Phylogeny of Prasinophyte Antenna Proteins: Ostreococcus tauri, a Case Study
    Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2217-2230.
    by Christophe Six, Alexandra Z Worden, Herve Moreau, Frederic Partensky
    posted to evolution lhc by dandaman on 2007-12-10 08:05:51 as ***
  • TCP Transcription Factors Predate the Emergence of Land Plants
    Journal of Molecular Evolution, Vol. 65, No. 1. (July 2007), pp. 23-33.
    by Navaud, Olivier, Dabos, Patrick, Carnus, Elodie, Tremousaygue, Dominique, Herve, Christine
    posted to evolution land_plant by dandaman on 2007-11-28 18:18:13 as ***
  • The early eukaryotic fossil record.
    Adv Exp Med Biol, Vol. 607 (2007), pp. 1-19.
    by EJ Javaux
    posted to evolution fossil_record by dandaman on 2007-11-09 18:26:59 as ***
  • Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
    Genome Biology, Vol. 8 (25 June 2007), R121.
    by Masumi Itoh, Jose C Nacher, Kei-Ichi Kuma, Susumu Goto, Minoru Kanehisa
    posted to domain_evolution evolution protein_domains by dandaman on 2007-11-09 18:24:21 as *** along with 2 people tny cjeans
  • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    BMC Evolutionary Biology, Vol. 4, No. 1. (2004)
    by S Hedges, Jaime Blair, Maria Venturi, Jason Shoe
    posted to evolution by dandaman on 2007-11-09 17:38:10 as *** along with 1 person stajich
  • Chloroplast Phylogeny Indicates that Bryophytes Are Monophyletic
    Mol Biol Evol, Vol. 21, No. 10. (1 October 2004), pp. 1813-1819.
    by Tomoaki Nishiyama, Paul G Wolf, Masanori Kugita, Robert B Sinclair, Mamoru Sugita, Chika Sugiura, Tatsuya Wakasugi, Kyoji Yamada, Koichi Yoshinaga, Kazuo Yamaguchi, Kunihiko Ueda, Mitsuyasu Hasebe
    posted to bryophyte evolution by dandaman on 2007-11-07 11:05:25 as ***
  • Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments.
    Mol Biol Evol (20 August 2007)
    by Tanya Golubchik, Michael J J Wise, Simon Easteal, Lars S S Jermiin
    posted to alignment msa multiple by dandaman on 2007-11-06 09:31:25 as *** along with 3 people caseybrown zwang lilou
  • Prediction of trans-antisense transcripts in Arabidopsis thaliana
    Genome Biology, Vol. 7 (13 October 2006), R92.
    by Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
    posted to antisense ncrna rnai by dandaman on 2007-11-05 14:05:19 as *** along with 2 people and 1 group cdawson plofje GIG
  • Tracing the Evolution of the Light-Harvesting Antennae in Chlorophyll a/b-Containing Organisms.
    Plant Physiol (16 February 2007)
    by Adam G G Koziol, Tudor Borza, Ken-Ichiro I Ishida, Patrick Keeling, Robert W W Lee, Dion G G Durnford
    posted to evolution lhcp by dandaman on 2007-11-05 13:39:26 as *** along with 1 person maadoudemoiikedo
  • Gene conversion: mechanisms, evolution and human disease
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 762-775.
    by Jian-Min Chen, David N Cooper, Nadia Chuzhanova, Claude Férec, George P Patrinos
    posted to conversion evolution gene by dandaman on 2007-11-02 16:08:51 as *** along with 3 people and 2 groups balicea dchughes giovanni G4ID Genetics-of-Gambling
  • Duplicates provide only limited cover
    Nature Reviews Genetics, Vol. 8, No. 5., pp. 328-328.
    by Louisa Flintoft
    posted to evolution by dandaman on 2007-11-02 15:57:48 as ***
  • Transposable elements and the epigenetic regulation of the genome
    Nature Reviews Genetics, Vol. 8, No. 4., pp. 272-285.
    by Keith R Slotkin, Robert Martienssen
    posted to transposons by dandaman on 2007-11-02 15:56:02 as *** along with 2 people and 2 groups dchughes rschulz G4ID Genetics-of-Gambling
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to evolution by dandaman on 2007-11-02 15:48:55 as *** along with 19 people and 4 groups heliopais bootsy aprasad jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 maralena EisenLab microRNA Nie GIG
  • Recombination: an underappreciated factor in the evolution of plant genomes
    Nature Reviews Genetics, Vol. 8, No. 1., pp. 77-84.
    by Brandon S Gaut, Stephen I Wright, Carène Rizzon, Jan Dvorak, Lorinda K Anderson
    posted to evolution recombination by dandaman on 2007-11-02 15:45:12 as *** along with 3 people echinotrix timflutre urgi
  • Specialization and evolution of endogenous small RNA pathways
    Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 884-896.
    by Elisabeth J Chapman, James C Carrington
    posted to ncrna by dandaman on 2007-11-02 15:39:18 as *** along with 5 people Einat dchughes alwinpremanand cabbagezs maralena
  • Evaluating Support for the Current Classification of Eukaryotic Diversity
    PLoS Genetics, Vol. 2, No. 12. (1 December 2006), e220.
    by Laura W Parfrey, Erika Barbero, Elyse Lasser, Micah Dunthorn, Debashish Bhattacharya, David J Patterson, Laura A Katz
    posted to evolution by dandaman on 2007-11-02 14:17:12 as *** along with 4 people and 1 group rvosa stajich srfairclough cmzmasek FAB-lab
  • Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics.
    BMC Bioinformatics, Vol. 5 (23 June 2004)
    by BR Zeeberg, J Riss, DW Kane, KJ Bussey, E Uchio, WM Linehan, JC Barrett, JN Weinstein
    posted to interesting by dandaman on 2007-11-02 08:53:41 as *** along with 3 people frohike neteler dullhunk
  • RNA silencing: Genomic defence with a slice of pi
    Nature, Vol. 446, No. 7138. (18 April 2007), pp. 864-865.
    by Phillip D Zamore
    posted to ncrna transposons by dandaman on 2007-10-31 08:25:31 as *** along with 4 people and 1 group bala tardigrade saru timflutre DictyosteliumGroup
  • The age of the earliest club mosses: the Silurian Baragwanathia flora in Victoria, Australia
    Geological Magazine, Vol. 137, No. 2. (1 March 2000), pp. 207-209.
    by RB Rickards
    posted to fossil_record by dandaman on 2008-07-24 15:38:11 as ** along with 1 person ms609
  • THE EARLIEST VASCULAR PLANT OR A LATER ROOTING SYSTEM? PINNATIRAMOSUS QIANENSIS FROM THE MARINE LOWER SILURIAN XIUSHAN FORMATION, GUIZHOU PROVINCE, CHINA
    Palaios, Vol. 22, No. 2. (1 March 2007), pp. 155-165.
    by Dianne Edwards, WANG Yi, Michael G Bassett, Li CHENG Sen
    posted to fossil_record by dandaman on 2008-07-24 15:35:26 as **
  • Morphologically complex plant macrofossils from the Late Silurian of Arctic Canada
    Am. J. Bot., Vol. 89, No. 6. (1 June 2002), pp. 1004-1013.
    by Michele E Kotyk, James F Basinger, Patricia G Gensel, Tim A de Freitas
    posted to fossil_record by dandaman on 2008-07-24 15:32:15 as **
  • Genetic diversity of Nostoc symbionts endophytically associated with two bryophyte species.
    Applied and environmental microbiology, Vol. 67, No. 9. (September 2001), pp. 4393-4396.
    by JL Costa, P Paulsrud, J Rikkinen, P Lindblad
    posted to symbiosis liverworts hornworts bryophyte by dandaman on 2008-07-22 16:42:28 as **
  • Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases
    Bioinformatics (18 January 2007), btl647.
    by Alexander V Alekseyenko, Christopher J Lee
    posted to data_structures databases algorithms by dandaman on 2008-07-22 14:27:45 as **
  • Pseudoallelism and gene evolution.
    Cold Spring Harbor symposia on quantitative biology, Vol. 16 (1951), pp. 159-174.
    by EB LEWIS
    posted to pseudoalleles by dandaman on 2008-07-10 10:05:49 as **
  • E. B. Lewis and the Bithorax Complex: Part I
    Genetics, Vol. 160, No. 4. (1 April 2002), pp. 1265-1272.
    by Ian Duncan, Geoffrey Montgomery
    posted to pseudoalleles by dandaman on 2008-07-10 07:09:02 as **
  • Earth's oldest liverworts--Metzgeriothallus sharonae sp. nov. from the Middle Devonian (Givetian) of eastern New York, USA
    Review of Palaeobotany and Palynology, Vol. In Press, Accepted Manuscript
    by Van Aller, Ed Landing, Kenneth E Bartowski
    posted to liverworts fossil_record evolution by dandaman on 2008-07-02 10:29:49 as **
  • Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
    Science, Vol. 317, No. 5836. (20 July 2007), pp. 338-342.
    by Richard M Clark, Gabriele Schweikert, Christopher Toomajian, Stephan Ossowski, Georg Zeller, Paul Shinn, Norman Warthmann, Tina T Hu, Glenn Fu, David A Hinds, Huaming Chen, Kelly A Frazer, Daniel H Huson, Bernhard Scholkopf, Magnus Nordborg, Gunnar Ratsch, Joseph R Ecker, Detlef Weigel
    posted to variation population_genomics by dandaman on 2008-07-01 13:20:37 as ** along with 3 people and 1 group xwbcn sstoma braingrind VirtualPlants
  • The biology of bryophytes--bryophytes aren't just small tracheophytes
    Am. J. Bot., Vol. 88, No. 11. (1 November 2001), pp. 2129-2131.
    by Brent D Mishler
    posted to moss evolution bryophyte by dandaman on 2008-06-29 18:35:10 as **
  • Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.
    Plant Cell, Vol. 16, No. 1. (January 2004), pp. 241-256.
    by JL Heazlewood, JS Tonti-Filippini, AM Gout, DA Day, J Whelan, AH Millar
    posted to targeting by dandaman on 2008-06-20 11:41:17 as **
  • Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome
    PLoS ONE, Vol. 3, No. 4. (23 April 2008), e1994.
    by Boris Zybailov, Heidi Rutschow, Giulia Friso, Andrea Rudella, Olof Emanuelsson, Qi Sun, Klaas J van Wijk
    posted to targeting plastid by dandaman on 2008-06-20 11:32:41 as **
  • Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.
    Biology letters (3 June 2008)
    by Fabien Burki, Kamran Shalchian-Tabrizi, Jan Pawlowski
    posted to plastid_evolution planta evolution by dandaman on 2008-06-19 08:11:10 as **
  • Reconstructing evolution: gene transfer from plastids to the nucleus.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 6. (June 2008), pp. 556-566.
    by R Bock, JN Timmis
    posted to plastid_evolution endosymbiosis egt by dandaman on 2008-06-19 08:10:23 as **
  • Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by A Moustafa, A Reyes-Prieto, D Bhattacharya
    posted to plastid_evolution endosymbiosis by dandaman on 2008-06-19 08:09:36 as ** along with 1 person ahmedmoustafa
  • The origin of plastids.
    Philosophical transactions of the Royal Society of London. Series B, Biological sciences (9 May 2008)
    by C J J Howe, A C C Barbrook, R E R E Nisbet, P J J Lockhart, A W D W Larkum
    posted to plastid_evolution endosymbiosis by dandaman on 2008-06-19 08:07:52 as **
  • Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences.
    Journal of molecular evolution, Vol. 57, No. 4. (October 2003), pp. 377-382.
    by H Nozaki, N Ohta, M Matsuzaki, O Misumi, T Kuroiwa
    posted to plastid_evolution monophyly by dandaman on 2008-06-18 10:13:07 as **
  • Contribution of genosystematics to current concepts of phylogeny and classification of bryophytes.
    Biochemistry. Biokhimii͡a, Vol. 72, No. 12. (December 2007), pp. 1368-1376.
    by AV Troitsky, MS Ignatov, VK Bobrova, IA Milyutina
    posted to moss bryophyte by dandaman on 2008-06-13 17:11:09 as **
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