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dandamans library [174 articles]

Neue Artikel in dandamans Bibliothek.
  • Genome evolution in polyploids.
    Plant Mol Biol, Vol. 42, No. 1. (January 2000), pp. 225-249.
    by JF Wendel
    posted to polypoidy genome_evolution by dandaman on 2008-05-15 14:34:25 as ** along with 2 people echinotrix timflutre
  • Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants
    BMC Genomics, Vol. 9 (21 April 2008), 183.
    by Matthieu G Conte, Sylvain Gaillard, Gaetan Droc, Christophe Perin
    posted to software phylogeny_pipeline ortholog_prediction by dandaman on 2008-05-15 14:11:04 as ** along with 1 person kengg
  • Different pathways of homologous recombination are used for the repair of double-strand breaks within tandemly arranged sequences in the plant genome
    The Plant Journal, Vol. 35, No. 5. (2003), pp. 604-612.
    by Nadiya Orel, Anzhela Kyryk, Holger Puchta
    posted to gene_conversion dsb_repair concerted_evolution by dandaman on 2008-05-15 10:17:40 as **
  • Efficient repair of genomic double-strand breaks by homologous recombination between directly repeated sequences in the plant genome.
    The Plant cell, Vol. 14, No. 5. (May 2002), pp. 1121-1131.
    by R Siebert, H Puchta
    posted to gene_conversion dsb_repair by dandaman on 2008-05-15 10:11:03 as **
  • Molecular evolution of the small subunit of ribulose bisphosphate carboxylase: nucleotide substitution and gene conversion.
    Genetics, Vol. 123, No. 4. (December 1989), pp. 845-863.
    by RB Meagher, S Berry-Lowe, K Rice
    posted to gene_conversion concerted_evolution by dandaman on 2008-05-15 09:53:52 as **
  • Sister chromatid gene conversion is a prominent double-strand break repair pathway in mammalian cells.
    The EMBO journal, Vol. 19, No. 13. (3 July 2000), pp. 3398-3407.
    by RD Johnson, M Jasin
    posted to gene_conversion by dandaman on 2008-05-15 09:50:15 as **
  • The effect of gene conversion on the divergence between duplicated genes.
    Genetics, Vol. 166, No. 3. (March 2004), pp. 1553-1560.
    by KM Teshima, H Innan
    posted to gene_evolution gene_conversion by dandaman on 2008-05-15 09:30:39 as **
  • Gene conversion in the rice genome
    BMC Genomics, Vol. 9 (25 February 2008), 93.
    by Shuqing Xu, Terry Clark, Hongkun Zheng, Soren Vang, Ruiqiang Li, Gane KS Wong, Jun Wang, Xiaoguang Zheng
    posted to gene_evolution gene_conversion by dandaman on 2008-05-15 08:57:42 as **
  • Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm.
    Plant Physiol, Vol. 145, No. 2. (October 2007), pp. 411-425.
    by RM Stupar, PJ Hermanson, NM Springer
    posted to allelic_expression by dandaman on 2008-05-15 08:53:49 as ** along with 1 person rschulz
  • Evolution of Duplicate Gene Expression in Polyploid and Hybrid Plants
    J Hered, Vol. 98, No. 2. (1 March 2007), pp. 136-141.
    by Keith L Adams
    posted to wgd genome_duplication gene_evolution gene_dosage expression by dandaman on 2008-05-15 08:33:21 as ** along with 5 people and 1 group balicea cmm echinotrix TaqSys natstreet FAB-lab
  • How to usefully compare homologous plant genes and chromosomes as DNA sequences
    The Plant Journal, Vol. 53, No. 4. (February 2008), pp. 661-673.
    by Lyons, Eric, Freeling, Michael
    posted to synteny syntenic_blocks software by dandaman on 2008-05-12 18:53:05 as ** along with 2 people kengg natstreet
  • Convergent evolution of shoots in land plants: lack of auxin polar transport in moss shoots
    Evolution & Development, Vol. 10, No. 2. (April 2008), pp. 176-186.
    by Fujita, Tomomichi, Sakaguchi, Hisako, Hiwatashi, Yuji, Wagstaff, J Steven, Ito, Motomi, Deguchi, Hironori, Sato, Toshiyuki, Hasebe, Mitsuyasu
    posted to bryophyte_evolution bryophyte auxin by dandaman on 2008-05-09 16:03:21 as **
  • Dissection of the light signal transduction pathways regulating the two early light-induced protein genes in Arabidopsis.
    Plant physiology, Vol. 127, No. 3. (November 2001), pp. 986-997.
    by O Harari-Steinberg, I Ohad, DA Chamovitz
    posted to lhcps lhcp lhc elips by dandaman on 2008-05-07 13:04:12 as **
  • Plants lacking the main light-harvesting complex retain photosystem II macro-organization
    Nature, Vol. 421, No. 6923. (6 February 2003), pp. 648-652.
    by AV Ruban, M Wentworth, AE Yakushevska, J Andersson, PJ Lee, W Keegstra, JP Dekker, EJ Boekema, S Jansson, P Horton
    posted to lhcps lhcp lhcb5 lhc by dandaman on 2008-05-06 18:53:39 as **
  • Mechanisms of photoprotection and nonphotochemical quenching in pea light-harvesting complex at 2.5 [angst] resolution
    The EMBO Journal, Vol. aop, No. current. (17 February 2005)
    by Jorg Standfuss, ACTv Anke, Matteo Lamborghini, Werner Kuhlbrandt
    posted to lhcps lhcp lhc by dandaman on 2008-05-06 17:28:11 as ** along with 1 person and 2 groups jwm Radiation_Damage Stressosome
  • A look within LHCII: differential analysis of the Lhcb1-3 complexes building the major trimeric antenna complex of higher-plant photosynthesis.
    Biochemistry, Vol. 43, No. 29. (27 July 2004), pp. 9467-9476.
    by S Caffarri, R Croce, L Cattivelli, R Bassi
    posted to lhcps lhcp lhc by dandaman on 2008-05-06 16:46:45 as **
  • EVOLUTION: Tracing Oxygen's Imprint on Earth's Metabolic Evolution
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1724-1725.
    by Paul G Falkowski
    posted to oxygen land_transition evolution by dandaman on 2008-05-05 22:20:37 as **
  • In silico and biochemical analysis of Physcomitrella patens photosynthetic antenna: identification of subunits which evolved upon land adaptation.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by A Alboresi, S Caffarri, F Nogue, R Bassi, T Morosinotto
    posted to lhcps lhcp lhc by dandaman on 2008-05-05 20:28:38 as **
  • Photosynthetic acclimation: Structural reorganisation of light harvesting antenna role of redox-dependent phosphorylation of major and minor chlorophyll a/b binding proteins
    FEBS Journal, Vol. 275, No. 6. (March 2008), pp. 1056-1068.
    by Kargul, Joanna, Barber, James
    posted to lhcps lhcp lhc by dandaman on 2008-05-01 11:16:06 as **
  • Identification of the mobile light-harvesting complex II polypeptides for state transitions in Chlamydomonas reinhardtii.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 2. (10 January 2006), pp. 477-482.
    by H Takahashi, M Iwai, Y Takahashi, J Minagawa
    posted to lhcps lhcp lhc by dandaman on 2008-04-30 13:24:07 as **
  • Light-induced short-term adaptation mechanisms under redox control in the PS II-LHCII supercomplex: LHC II state transitions and PS II repair cycle
    Naturwissenschaften, Vol. 88, No. 7. (1 July 2001), pp. 284-292.
    by Olaf Kruse
    posted to lhcps lhcp lhc by dandaman on 2008-04-30 10:41:34 as **
  • Lil3 assembles as chlorophyll-binding protein complex during deetiolation.
    FEBS letters, Vol. 582, No. 10. (30 April 2008), pp. 1547-1551.
    by V Reisinger, M Plöscher, LA Eichacker
    posted to lhcps elips by dandaman on 2008-04-29 16:16:08 as **
  • Let Me Count the Ways: Mechanisms of Gene Regulation by miRNAs and siRNAs
    Molecular Cell, Vol. 29, No. 1. (18 January 2008), pp. 1-7.
    by Ligang Wu, Joel G Belasco
    posted to small_rnas sirna ptgs mirna by dandaman on 2008-04-25 09:28:10 as ** along with 4 people and 1 group maralena heliopais neha_sarode lambda microRNA
  • A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development.
    Science, Vol. 303, No. 5666. (26 March 2004), pp. 2022-2025.
    by X Chen
    posted to translation_inhibition small_rnas ptgs mirna by dandaman on 2008-04-25 09:19:02 as ** along with 1 person imouthesmp
  • Protein secondary structure prediction based on position-specific scoring matrices.
    J Mol Biol, Vol. 292, No. 2. (17 September 1999), pp. 195-202.
    by DT Jones
    posted to secondary_structure prediction by dandaman on 2008-04-24 17:30:53 as ** along with 7 people chad_davis wouterboomsma j3xucite dgront leelarcombe rabio rph
  • A Roadmap of Tandemly Arrayed Genes in the Genomes of Human, Mouse, and Rat
    Molecular Biology and Evolution, Vol. 23, No. 11. (November 2006), pp. 2134-2141.
    by Shoja, Valia, Zhang, Liqing
    posted to tags by dandaman on 2008-04-24 09:07:28 as ** along with 1 person JeffR100
  • The family of light-harvesting-related proteins (LHCs, ELIPs, HLIPs): was the harvesting of light their primary function?
    Gene, Vol. 258, No. 1-2. (27 November 2000), pp. 1-8.
    by Marie-Hélène Montané, Klaus Kloppstech
    posted to lhcp lhc elips by dandaman on 2008-04-23 19:20:40 as **
  • A guide to the Lhc genes and their relatives in Arabidopsis
    Trends in Plant Science, Vol. 4, No. 6. (1 June 1999), pp. 236-240.
    by Stefan Jansson
    posted to lhcp lhc elips by dandaman on 2008-04-23 19:19:57 as **
  • Localization of the Small CAB-like Proteins in Photosystem II
    J. Biol. Chem., Vol. 282, No. 1. (5 January 2007), pp. 267-276.
    by Danny Yao, Thomas Kieselbach, Josef Komenda, Kamoltip Promnares, Miguel A Prieto, Martin Tichy, Wim Vermaas, Christiane Funk
    posted to lhcp elips by dandaman on 2008-04-23 19:14:53 as **
  • Elevated Zeaxanthin Bound to Oligomeric LHCII Enhances the Resistance of Arabidopsis to Photooxidative Stress by a Lipid-protective, Antioxidant Mechanism
    J. Biol. Chem., Vol. 282, No. 31. (3 August 2007), pp. 22605-22618.
    by Matthew P Johnson, Michel Havaux, Christian Triantaphylides, Brigitte Ksas, Andrew A Pascal, Bruno Robert, Paul A Davison, Alexander V Ruban, Peter Horton
    posted to zeaxantin npq lhc by dandaman on 2008-04-23 19:01:22 as **
  • Early light-induced proteins protect Arabidopsis from photooxidative stress
    Proceedings of the National Academy of Sciences, Vol. 100, No. 8. (15 April 2003), pp. 4921-4926.
    by Claire Hutin, Laurent Nussaume, Nicolae Moise, Ismael Moya, Klaus Kloppstech, Michel Havaux
    posted to lhcp lhc elips by dandaman on 2008-04-23 18:52:35 as **
  • The light stress-induced protein ELIP2 is a regulator of chlorophyll synthesis in Arabidopsis thaliana
    The Plant Journal, Vol. 50, No. 5. (June 2007), pp. 795-809.
    by Tzvetkova-Chevolleau, Tzvetelina, Franck, Fabrice, Alawady, E Ali, Dallosto, Luca, Carriere, Frederic, Bassi, Roberto, Grimm, Bernhard, Nussaume, Laurent, Havaux, Michel
    posted to lhcp lhc elips by dandaman on 2008-04-23 18:47:55 as **
  • The Evolution of Chlorophylls and Photosynthesis
    Chlorophylls and Bacteriochlorophylls (2006), pp. 261-282.
    by Anthony Larkum
    posted to photosynthesis evolution by dandaman on 2008-04-23 18:19:55 as **
  • A Novel Two Domain-Fusion Protein in Cyanobacteria with Similarity to the CAB/ELIP/HLIP Superfamily: Evolutionary Implications and Regulation
    Mol Plant, Vol. 1, No. 1. (1 January 2008), pp. 155-166.
    by Oliver Kilian, Anne S Steunou, Arthur R Grossman, Devaki Bhaya
    posted to lhcp lhc elips by dandaman on 2008-04-23 18:17:12 as **
  • Light stress-regulated two-helix proteins in Arabidopsis thaliana related to the chlorophyll a/b-binding gene family
    Proceedings of the National Academy of Sciences, Vol. 97, No. 7. (28 March 2000), pp. 3741-3746.
    by Mounia Heddad, Iwona Adamska
    posted to lhc elips by dandaman on 2008-04-23 18:10:51 as **
  • Abundantly and Rarely Expressed Lhc Protein Genes Exhibit Distinct Regulation Patterns in Plants
    Plant Physiol., Vol. 140, No. 3. (1 March 2006), pp. 793-804.
    by Frank Klimmek, Andreas Sjodin, Christos Noutsos, Dario Leister, Stefan Jansson
    posted to lhc by dandaman on 2008-04-23 17:55:29 as ** along with 1 person natstreet
  • Natural selection of protein structural and functional properties: a SNP perspective
    Genome Biology, Vol. 9, No. 4. (2008)
    by Jinfeng Liu, Yan Zhang, Xingye Lei, Zemin Zhang
    posted to evolution selection snp by dandaman on 2008-04-09 05:53:16 as ** along with 4 people and 1 group operon fernan stajich ramensky Berkeley Mycology
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to 454 assembly short_read by dandaman on 2008-04-08 15:49:59 as ** along with 3 people azazello GustavoLacerda caseybrown
  • Proteomic analysis of the response to high-salinity stress in Physcomitrella patens
    Planta
    by Xiaoqin Wang, Pingfang Yang, Qian Gao, Xianglin Liu, Tingyun Kuang, Shihua Shen, Yikun He
    posted to lhcp proteomics stress by dandaman on 2008-03-28 10:52:52 as **
  • The diversity of LTR retrotransposons.
    Genome Biol, Vol. 5, No. 6. (2004)
    by ER Havecker, X Gao, DF Voytas
    posted to ltr retrotransposons by dandaman on 2008-03-19 16:00:22 as ** along with 2 people aprasad cellison
  • Comparative sequencing of plant genomes: choices to make.
    Plant Cell, Vol. 18, No. 5. (May 2006), pp. 1100-1104.
    by S Jackson, S Rounsley, M Purugganan
    posted to genome_sequencing genomics by dandaman on 2008-03-11 09:17:43 as ** along with 1 person and 1 group indigoviolet EisenLab
  • The Amborella genome: an evolutionary reference for plant biology
    Genome Biology, Vol. 9 (10 March 2008), 402.
    by Douglas E Soltis, Victor A Albert, Jim Leebens-Mack, Jeffrey D Palmer, Rod A Wing, Claude W Depamphilis, Hong Ma, John E Carlson, Naomi Altman, Sangtae Kim, Kerr P Wall, Andrea Zuccolo, Pamela S Soltis
    posted to amborella genome_paper by dandaman on 2008-03-11 06:56:21 as **
  • Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309.
    by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
    posted to alignment by dandaman on 2008-03-03 17:36:12 as ** along with 6 people aprasad brant treangen djkt grahamc mailund
  • A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 137-147.
    by DR Scannell, KH Wolfe
    posted to genome_duplication genome_evolution paleoploidy wgd by dandaman on 2008-03-03 17:32:16 as ** along with 3 people and 1 group djkt stajich gjuggler Berkeley Mycology
  • Auxin in action: signalling, transport and the control of plant growth and development
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (20 September 2006), pp. 847-859.
    by William D Teale, Ivan A Paponov, Klaus Palme
    posted to auxin by dandaman on 2008-03-03 09:08:37 as **
  • Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites
    BMC Plant Biology, Vol. 6 (30 May 2006), 9.
    by Mark von Stackelberg, Stefan A Rensing, Ralf Reski
    posted to ecotypes physcomitrella by dandaman on 2008-02-29 15:49:37 as ** along with 1 person GAbratti
  • Was "molecular opportunism" a factor in the evolution of different photosynthetic light-harvesting pigment systems?
    Proceedings of the National Academy of Sciences, Vol. 98, No. 5. (27 February 2001), pp. 2119-2121.
    by Beverley R Green
    posted to evolution lhcp by dandaman on 2008-02-29 09:03:19 as **
  • Mesozoic climate: Liverworts and all
    Nature Geosci, Vol. 1, No. 1. (January 2008), pp. 14-15.
    by Klaus Wallmann
    posted to co2 cretaceous jurrassic liverworts by dandaman on 2008-02-21 10:11:27 as **
  • The GapA/B Gene Duplication Marks the Origin of Streptophyta (Charophytes and Land Plants)
    Molecular Biology and Evolution, Vol. 23, No. 6. (June 2006), pp. 1109-1118.
    by Petersen, Jorn, Teich, Rene, Becker, Burkhard, Cerff, Rudiger, Brinkmann, Henner
    posted to algae charophyceae land_plant_evolution by dandaman on 2008-02-18 19:58:56 as **
  • Homologous Recombination in the Nuclear Genome of Chlamydomonas reinhardtii
    Proceedings of the National Academy of Sciences, Vol. 90, No. 19. (1 October 1993), pp. 9199-9203.
    by OA Sodeinde, KL Kindle
    posted to chlamydomonas homologous_recombination hr by dandaman on 2008-02-18 15:12:45 as **
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