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cmzmaseks library [168 articles]

Neue Artikel in cmzmaseks ordered by to_read.
  • Canonical Wnt Signaling Regulates Organ-Specific Assembly and Differentiation of CNS Vasculature
    Science, Vol. 322, No. 5905. (21 November 2008), pp. 1247-1250.
    by Jan M Stenman, Jay Rajagopal, Thomas J Carroll, Makoto Ishibashi, Jill Mcmahon, Andrew P Mcmahon
    posted to wnt cns_vasculature by cmzmasek on 2008-11-29 00:36:26 as **
  • Antimicrobial Defense and Persistent Infection in Insects
    Science, Vol. 322, No. 5905. (21 November 2008), pp. 1257-1259.
    by Eleanor R Haine, Yannick Moret, Michael T Siva-Jothy, Jens Rolff
    posted to insects immunity by cmzmasek on 2008-11-29 00:16:40 as **
  • Innovation and robustness in complex regulatory gene networks.
    Proc Natl Acad Sci U S A (9 August 2007)
    by S Ciliberti, O C C Martin, A Wagner
    posted to systems-biology regulatory_network_evolution plasticity network-evolution evolvability evo-devo by cmzmasek on 2008-11-28 23:59:58 as ** along with 6 people and 3 groups dlobo jmenche dpollard sebastien_vigneau zwang cisevol GEB EisenLab cis-regulatory-evolution
  • Evolution of alternative transcriptional circuits with identical logic
    Nature, Vol. 443, No. 7110. (2006), pp. 415-420.
    by Annie E Tsong, Brian B Tuch, Hao Li, Alexander D Johnson
    posted to transcriptional-regulatory-network plasticity network-evolution evolvability evolution-of-transcriptional-regulation evo-devo by cmzmasek on 2008-11-26 19:10:51 as ** along with 8 people and 4 groups balabu marcius brant adepace aswin srfairclough cisevol emptyhb EisenLab BioinfoCIPF SGU-CIPF cis-regulatory-evolution
  • Enrichment or depletion of a GO category within a class of genes: which test?
    Bioinformatics (20 December 2006)
    by Isabelle Rivals, Léon Personnaz, Lieng Taing, Marie-Claude C Potier
    posted to methods go-term-enrichment go-analysis computational-biology by cmzmasek on 2008-11-26 02:52:54 as ** along with 10 people and 3 groups cisevol paszkows winterschlaefer jyuh ealloza grahamc capitall zhouyu yas maralena BergmanLab BioinfoCIPF ParkinsonLab_at_MaRS
  • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1600-1607.
    by Alexa, Adrian, Rahnenfuhrer, Jorg, Lengauer, Thomas
    posted to methods go-term-enrichment go-analysis computational-biology by cmzmasek on 2008-11-26 02:49:57 as ** along with 4 people and 2 groups yas ealloza sgoetz marck T_lab BioinfoCIPF
  • The genes orthodenticle and hunchback substitute for bicoid in the beetle Tribolium.
    Nature, Vol. 422, No. 6932. (10 April 2003), pp. 621-625.
    by R Schröder
    posted to regulatory_network_evolution plasticity evo-devo developmental-pathways bicoid by cmzmasek on 2008-11-25 20:14:04 as ** along with 1 person maximilianh
  • Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes
    Science, Vol. 283, No. 5409. (19 March 1999), pp. 1919-1923.
    by Iñaki Ruiz-Trillo, Marta Riutort, Littlewood, Elisabeth A Herniou, Jaume Baguñà
    posted to platyhelminthes animal-evolution acoelomorpha by cmzmasek on 2008-11-25 19:55:28 as **
  • The dawn of bilaterian animals: the case of acoelomorph flatworms
    BioEssays, Vol. 26, No. 10. (2004), pp. 1046-1057.
    by Jaume Baguñà, Marta Riutort
    posted to animal-evolution acoelomorpha by cmzmasek on 2008-11-25 19:51:12 as **
  • Origin of the chordate central nervous system – and the origin of chordates
    Development Genes and Evolution, Vol. 209, No. 3. (7 February 1999), pp. 198-205.
    by Claus Nielsen
    posted to nervous_system_evolution hypothesis chordate-evolution central_nervous_system animal-evolution by cmzmasek on 2008-11-25 01:13:42 as **
  • Ascidians and the plasticity of the chordate developmental program.
    Current biology : CB, Vol. 18, No. 14. (22 July 2008)
    by P Lemaire, WC Smith, H Nishida
    posted to tunicates review regulatory_network_evolution plasticity evo-devo developmental-pathways animal-evolution by cmzmasek on 2008-11-25 01:04:53 as ** along with 1 person carlfulp
  • Beneath the surface
    Nature
    by Tanguy Chouard
    posted to evolution evo-devo complexity by cmzmasek on 2008-11-25 00:31:26 as **
  • Acoel development indicates the independent evolution of the bilaterian mouth and anus
    Nature (17 September 2008)
    by Andreas Hejnol, Mark Q Martindale
    posted to evolution evo-devo development animal-evolution acoelomorpha by cmzmasek on 2008-11-25 00:25:39 as **
  • The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila.
    Nature (19 October 2008)
    by Hsiao-Lan L Liang, Chung-Yi Y Nien, Hsiao-Yun Y Liu, Mark M M Metzstein, Nikolai Kirov, Christine Rushlow
    posted to zinc_finger_proteins zelda ideas development by cmzmasek on 2008-11-25 00:22:08 as ** along with 1 person mutagenic
  • Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy.
    Science (New York, N.Y.) (9 October 2008)
    by Philipp J J Keller, Annette D D Schmidt, Joachim Wittbrodt, Ernst H K H Stelzer
    posted to development cool by cmzmasek on 2008-11-25 00:19:02 as ** along with 4 people and 1 group tyrell_turing dlobo kshundyak imtechnology GEB
  • The proteasome: paradigm of a self-compartmentalizing protease.
    Cell, Vol. 92, No. 3. (6 February 1998), pp. 367-380.
    by W Baumeister, J Walz, F Zühl, E Seemüller
    posted to proteasome proteases by cmzmasek on 2008-11-25 00:15:55 as ** along with 1 person zhlei
  • Computer simulated evolution of a network of cell-signaling molecules.
    Biophysical journal, Vol. 66, No. 4. (April 1994), pp. 972-977.
    by D Bray, S Lay
    posted to simulation signaling regulatory_network_evolution_simulation by cmzmasek on 2008-11-25 00:09:15 as **
  • Simulation study on effects of signaling network structure on the developmental increase in complexity
    Journal of Theoretical Biology, Vol. 231, No. 1. (November 2004), pp. 3-21.
    by S Keranen
    posted to signaling-evolution regulatory_network_evolution_simulation evolution-of-complexity development complexity by cmzmasek on 2008-11-25 00:05:44 as **
  • Evolution of complexity in signaling pathways.
    Proc Natl Acad Sci U S A (23 October 2006)
    by Orkun S S Soyer, Sebastian Bonhoeffer
    posted to simulation signal-transduction regulatory_network_evolution_simulation evolution-of-complexity complexity by cmzmasek on 2008-11-24 23:58:39 as ** along with 5 people and 1 group brant cckan kray signalduplication Nelliesw EisenLab
  • Simulating the evolution of signal transduction pathways.
    J Theor Biol, Vol. 241, No. 2. (21 July 2006), pp. 223-232.
    by OS Soyer, T Pfeiffer, S Bonhoeffer
    posted to simulation signal-transduction regulatory_network_evolution_simulation by cmzmasek on 2008-11-24 23:53:45 as ** along with 1 person chrn
  • Par complex in cancer: a regulator of normal cell polarity joins the dark side
    Oncogene, Vol. 27, No. 55. (0000), pp. 6878-6887.
    by V Aranda, ME Nolan, SK Muthuswamy
    posted to review polarity par cell_polarity cancer by cmzmasek on 2008-11-24 19:49:50 as **
  • Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
    PNAS, Vol. 103, No. 48. (28 November 2006), pp. 18296-18301.
    by Steven J Hallam, Konstantinos T Konstantinidis, Nik Putnam, Christa Schleper, Yoh-Ichi Watanabe, Junichi Sugahara, Christina Preston, de La, Paul M Richardson, Edward F Delong
    posted to genome archaea by cmzmasek on 2008-11-19 22:34:49 as ** along with 1 person jmeppley
  • ProtTest: selection of best-fit models of protein evolution
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2104-2105.
    by Federico Abascal, Rafael Zardoya, David Posada
    posted to tools phylogeny-inference methods maximum_likelihood computational-biology by cmzmasek on 2008-11-19 20:11:40 as ** along with 2 people and 1 group akifumi penka Nie
  • The apicomplexan whole genome phylogeny: an analysis of incongruence among gene trees.
    Molecular biology and evolution (26 September 2008)
    by Chih-Horng H Kuo, John P P Wares, Jessica C C Kissinger
    posted to protozoan-evolution ideas eukaryote-evolution chromalveolate-evolution apicomplexans by cmzmasek on 2008-11-19 03:11:29 as **
  • The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    Nature (15 October 2008)
    by Chris Bowler, Andrew E Allen, Jonathan H Badger, Jane Grimwood, Kamel Jabbari, Alan Kuo, Uma Maheswari, Cindy Martens, Florian Maumus, Robert P Otillar, Edda Rayko, Asaf Salamov, Klaas Vandepoele, Bank Beszteri, Ansgar Gruber, Marc Heijde, Michael Katinka, Thomas Mock, Klaus Valentin, Fréderic Verret, John A Berges, Colin Brownlee, Jean-Paul Cadoret, Anthony Chiovitti, Chang J Choi, Sacha Coesel, Alessandra De Martino, Chris J Detter, Colleen Durkin, Angela Falciatore, Jérome Fournet, Miyoshi Haruta, Marie JJ Huysman, Bethany D Jenkins, Katerina Jiroutova, Richard E Jorgensen, Yolaine Joubert, Aaron Kaplan, Nils Kröger, Peter G Kroth, Julie La Roche, Erica Lindquist, Markus Lommer, Véronique Martin–jézéquel, Pascal J Lopez, Susan Lucas, Manuela Mangogna, Karen Mcginnis, Linda K Medlin, Anton Montsant, Marie-Pierre O Secq, Carolyn Napoli, Miroslav Obornik, Micaela S Parker, Jean-Louis Petit, Betina M Porcel, Nicole Poulsen, Matthew Robison, Leszek Rychlewski, Tatiana A Rynearson, Jeremy Schmutz, Harris Shapiro, Magali Siaut, Michele Stanley, Michael R Sussman, Alison R Taylor, Assaf Vardi, Peter von Dassow, Wim Vyverman, Anusuya Willis, Lucjan S Wyrwicz, Daniel S Rokhsar, Jean Weissenbach, Virginia E Armbrust, Beverley R Green, Yves Van de Peer, Igor V Grigoriev
    posted to genome diatoms algae by cmzmasek on 2008-11-19 02:27:00 as **
  • Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica.
    Proceedings of the National Academy of Sciences of the United States of America (11 November 2008)
    by Mary E E Rumpho, Jared M M Worful, Jungho Lee, Krishna Kannan, Mary S S Tyler, Debashish Bhattacharya, Ahmed Moustafa, James R R Manhart
    posted to photosynthesis molluscs horizontal_gene_transfer eukaryotes algae by cmzmasek on 2008-11-18 23:33:55 as ** along with 5 people and 2 groups operon smit2jam mlog vaulot ahmedmoustafa Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
    posted to domain-evolution domain-combinations domain-arrangements by cmzmasek on 2008-11-14 20:25:15 as ** along with 7 people saket michC neils grahamc zwang carlk dchughes
  • Arrangements in the modular evolution of proteins
    Trends in Biochemical Sciences, Vol. 33, No. 9. (September 2008), pp. 444-451.
    by A Moore
    posted to review protein-architecture domain-shuffling domain-evolution domain-combinations domain-arrangements by cmzmasek on 2008-11-14 20:13:22 as **
  • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    BMC Evolutionary Biology, Vol. 4, No. 1. (2004)
    by S Hedges, Jaime Blair, Maria Venturi, Jason Shoe
    posted to evolution-of-complexity divergence_times complexity cell-number by cmzmasek on 2008-11-13 21:39:00 as ** along with 2 people stajich dandaman
  • Improved Detection of Overrepresentation of Gene-Ontology Annotations with Parent-Child Analysis.
    Bioinformatics (11 September 2007)
    by Steffen Grossmann, Sebastian Bauer, Peter N N Robinson, Martin Vingron
    posted to go-term-enrichment go-analysis go computational-biology by cmzmasek on 2008-11-13 01:46:33 as ** along with 7 people dandaman tmmurali sgoetz grahamc heliopais RamuAnandakrishnan marck
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to tools go-term-enrichment go-analysis go computational-biology by cmzmasek on 2008-11-13 01:41:10 as ** along with 5 people diamantis dullhunk barriot jyuh kluck
  • Fission in Sea Anemones: Integrative Studies of Life Cycle Evolution
    Integr. Comp. Biol., Vol. 45, No. 4. (1 August 2005), pp. 615-622.
    by Jonathan B Geller, Laurie J Fitzgerald, Chad E King
    posted to sea_anemones model_systems life_cycle_evolution fission animal-evolution by cmzmasek on 2008-11-04 21:55:13 as **
  • Phylogenetic Context and Basal Metazoan Model Systems
    Integr. Comp. Biol., Vol. 45, No. 4. (1 August 2005), pp. 585-594.
    by Allen G Collins, Paulyn Cartwright, Catherine S Mcfadden, Bernd Schierwater
    posted to model_systems animal-evolution by cmzmasek on 2008-11-04 21:34:50 as **
  • An even newer animal phylogeny
    BioEssays, Vol. 30, No. 11-12. (2008), pp. 1043-1047.
    by Rob Desalle, Bernd Schierwater
    posted to trichoplax animal-evolution by cmzmasek on 2008-11-04 21:18:22 as **
  • My favorite animal, Trichoplax adhaerens
    BioEssays, Vol. 27, No. 12. (2005), pp. 1294-1302.
    by Bernd Schierwater
    posted to zoology trichoplax animal-evolution by cmzmasek on 2008-11-04 21:06:11 as **
  • Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians
    Trends in Genetics, Vol. 21, No. 12. (December 2005), pp. 633-639.
    by U Technau, S Rudd, P Maxwell, P Gordon, M Saina, L Grasso, D Hayward, C Sensen, R Saint, T Holstein
    posted to evolution-of-complexity evo-devo complexity animal-evolution by cmzmasek on 2008-11-04 20:45:30 as **
  • Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by A Matsuya, R Sakate, Y Kawahara, KO Koyanagi, Y Sato, Y Fujii, C Yamasaki, T Habara, H Nakaoka, F Todokoro, K Yamaguchi, T Endo, S Oota, W Makalowski, K Ikeo, Y Suzuki, K Hanada, K Hashimoto, M Hirai, H Iwama, N Saitou, AT Hiraki, L Jin, Y Kaneko, M Kanno, K Murakami, AO Noda, N Saichi, R Sanbonmatsu, M Suzuki, J Takeda, M Tanaka, T Gojobori, T Imanishi, T Itoh
    posted to tools phylogenomics orthologs databases computational-biology by cmzmasek on 2008-11-03 23:47:29 as ** along with 2 people shirleym jyuh
  • GOTax: investigating biological processes and biochemical activities along the taxonomic tree
    Genome Biology, Vol. 8 (08 March 2007), R33.
    by Andreas Schlicker, Jorg Rahnenfuhrer, Mario Albrecht, Thomas Lengauer, Francisco S Domingues
    posted to tools taxonomy go-analysis go computational-biology by cmzmasek on 2008-11-03 23:35:25 as ** along with 2 people marck pansapiens
  • BAX activation is initiated at a novel interaction site
    Nature, Vol. 455, No. 7216. (23 October 2008), pp. 1076-1081.
    by Evripidis Gavathiotis, Motoshi Suzuki, Marguerite L Davis, Kenneth Pitter, Gregory H Bird, Samuel G Katz, Ho-Chou Tu, Hyungjin Kim, Emily H Cheng, Nico Tjandra, Loren D Walensky
    posted to structural_biology bax apoptosis by cmzmasek on 2008-11-03 23:24:12 as ** along with 2 people emiko paulschlesinger
  • The mode of Hedgehog binding to Ihog homologues is not conserved across different phyla
    Nature (14 September 2008)
    by Jason S Mclellan, Xiaoyan Zheng, Glenn Hauk, Rodolfo Ghirlando, Philip A Beachy, Daniel J Leahy
    posted to hedgehog evo-devo developmental-pathways development by cmzmasek on 2008-11-03 23:16:17 as **
  • Reassessing the first appearance of eukaryotes and cyanobacteria
    Nature, Vol. 455, No. 7216. (23 October 2008), pp. 1101-1104.
    by Birger Rasmussen, Ian R Fletcher, Jochen J Brocks, Matt R Kilburn
    posted to paleontology eukaryote_origins eukaryote-evolution cyanobacteria by cmzmasek on 2008-11-03 22:48:40 as ** along with 2 people wsjames neils
  • A bizarre Jurassic maniraptoran from China with elongate ribbon-like feathers
    Nature, Vol. 455, No. 7216., pp. 1105-1108.
    by Fucheng Zhang, Zhonghe Zhou, Xing Xu, Xiaolin Wang, Corwin Sullivan
    posted to paleontology dinosaurs by cmzmasek on 2008-11-03 22:45:59 as **
  • Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
    Genome Biology, Vol. 8 (25 June 2007), R121.
    by Masumi Itoh, Jose C Nacher, Kei-Ichi Kuma, Susumu Goto, Minoru Kanehisa
    posted to evolution-of-complexity eukaryote-evolution domain-combinations complexity by cmzmasek on 2008-10-31 22:19:44 as ** along with 4 people jameswasmuth tny cjeans dandaman
  • Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
    Science (4 September 2008), 1164368.
    by Sian Jones, Xiaosong Zhang, Williams D Parsons, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R Smith, Manuel Hidalgo, Steven D Leach, Alison P Klein, Elizabeth M Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R Eshleman, Scott E Kern, Ralph H Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
    posted to signaling signal-transduction pathways ideas disease cancer by cmzmasek on 2008-10-30 22:44:37 as ** along with 13 people and 3 groups srp33 jfr whh98 roys thomaskelder fongkoh AlexanderPico SaraNasser renatomilani brianb shikin songpku giovenko ConklinLab GeneGo Roswell Cancer Crosstalk
  • Evolutionary complexity
    Complexity, Vol. 3, No. 6. (1998), pp. 12-14.
    by Harold Morowitz
    posted to review evolution-of-complexity complexity by cmzmasek on 2008-10-14 19:29:07 as **
  • The relationship between size and morphological complexity among multicellular organisms
    Biological Journal of the Linnean Society, Vol. 60 (1997), pp. 345-363.
    by G Bell, AO Mooers
    posted to evolution-of-complexity complexity cell-number by cmzmasek on 2008-10-14 01:04:47 as **
  • Mutation Rate and the Cost of Complexity
    Mol Biol Evol, Vol. 23, No. 5. (1 May 2006), pp. 957-963.
    by Ralph Haygood
    posted to evolution-of-complexity complexity cell-number by cmzmasek on 2008-10-14 00:59:10 as ** along with 1 person and 1 group stevanspringer FAB-lab
  • Horizontal gene transfer in plants
    Journal of Experimental Botany, Vol. 58, No. 1. (January 2007), pp. 1-9.
    by Richardson, O Aaron, Palmer, D Jeffrey
    posted to horizontal_gene_transfer by cmzmasek on 2008-10-11 02:53:55 as **
  • Synergy between sequence and size in Large-scale genomics
    Nature Reviews Genetics, Vol. 6, No. 9. (01 September 2005), pp. 699-708.
    by Ryan T Gregory
    posted to genome_size evolution-of-complexity complexity by cmzmasek on 2008-10-10 22:13:55 as ** along with 2 people aprasad brant
  • Cellular and Subcellular Structure of Neoproterozoic Animal Embryos
    Science, Vol. 314, No. 5797. (13 October 2006), pp. 291-294.
    by James W Hagadorn, Shuhai Xiao, Philip C Donoghue, Stefan Bengtson, Neil J Gostling, Maria Pawlowska, Elizabeth C Raff, Rudolf A Raff, Rudolf F Turner, Yin Chongyu, Chuanming Zhou, Xunlai Yuan, Matthew B Mcfeely, Marco Stampanoni, Kenneth H Nealson
    posted to evolution-of-complexity evo-devo complexity animal-evolution by cmzmasek on 2008-10-10 22:06:41 as **
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