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cjeans sequence [79 articles]

Neue Publikationen in cjeans Bibliothek eingetragen unter dem Bezeichner: sequence. You can also see everyone's sequence.
  • Evaluation of methods for the prediction of membrane spanning regions.
    Bioinformatics, Vol. 17, No. 7. (July 2001), pp. 646-653.
    by S Möller, MD Croning, R Apweiler
    posted to sequence by cjeans on 2008-03-03 08:13:44 as ** along with 2 people happy_manatee xingxu
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417.
    by Antonis Rokas
    posted to sequence by cjeans on 2008-01-25 06:54:26 as ** along with 7 people operon dayjm lilou dandaman renatomilani bpcusack gjuggler
  • Matt: Local Flexibility Aids Protein Multiple Structure Alignment
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e10.
    by Matthew Menke, Bonnie Berger, Lenore Cowen
    posted to sequence structure by cjeans on 2008-01-14 03:31:23 as **
  • Analysis of compositionally biased regions in sequence databases.
    Methods Enzymol, Vol. 266 (1996), pp. 554-571.
    by JC Wootton, S Federhen
    posted to sequence by cjeans on 2007-12-25 12:08:53 as ** along with 1 person mydreamday
  • The Signal Sequence Coding Region Promotes Nuclear Export of mRNA.
    PLoS Biol, Vol. 5, No. 12. (4 December 2007)
    by Alexander F F Palazzo, Michael Springer, Yoko Shibata, Chung-Sheng S Lee, Anusha P P Dias, Tom A A Rapoport
    posted to regulation rna sequence by cjeans on 2007-12-20 01:45:46 as **
  • Sequence evolution and the mechanism of protein folding.
    Biophys J, Vol. 79, No. 4. (October 2000), pp. 1787-1799.
    by AR Ortiz, J Skolnick
    posted to evolution sequence structure by cjeans on 2007-12-01 07:16:13 as ** along with 2 people and 2 groups marcius penka BioinfoCIPF SGU-CIPF
  • Prediction of potential protein-protein interaction sites from amino acid sequence : Identification of a fibrin polymerization site
    FEBS Letters, Vol. 385, No. 1-2. (29 April 1996), pp. 81-86.
    by Manjunatha R Kini, Herbert J Evans
    posted to ppi sequence by cjeans on 2007-11-30 01:17:49 as **
  • Learning to predict protein-protein interactions from protein sequences.
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881.
    by SM Gomez, WS Noble, A Rzhetsky
    posted to ppi sequence by cjeans on 2007-11-27 12:13:56 as ** along with 4 people maryee grahamc wilbur Pao-Yang
  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753.
    by Edward M Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W Rice, Todd O Yeates, David Eisenberg
    posted to genome-wide ppi sequence by cjeans on 2007-11-27 11:57:31 as ** along with 7 people and 1 group lfriedl balajis opheliav gurkanbebek ruvido Evangelia iris_2001 kdl
  • Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
    J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502.
    by R Landgraf, I Xenarios, D Eisenberg
    posted to sequence structure by cjeans on 2007-11-27 08:26:36 as ** along with 6 people and 2 groups barry pansapiens sriram_s mingzhi Pao-Yang marti structural_bioinformatics Bioinformatics
  • ISIS: interaction sites identified from sequence.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by Y Ofran, B Rost
    posted to ppi sequence by cjeans on 2007-11-27 06:06:19 as ** along with 1 person rabio
  • Predicted protein-protein interaction sites from local sequence information.
    FEBS Lett, Vol. 544, No. 1-3. (5 June 2003), pp. 236-239.
    by Y Ofran, B Rost
    posted to ppi sequence structure by cjeans on 2007-11-27 06:05:36 as **
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to ppi sequence structure by cjeans on 2007-11-27 05:44:13 as ** along with 7 people and 3 groups bicko dchughes grahamc zwang Jporci Pao-Yang higueruelo G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to ppi sequence structure by cjeans on 2007-11-27 05:43:32 as ** along with 2 people zwang winterschlaefer
  • An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e231.
    by Art F Poon, Fraser I Lewis, Sergei L Pond, Simon D Frost
    posted to sequence by cjeans on 2007-11-27 01:51:50 as **
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
    posted to function sequence structure by cjeans on 2007-11-27 00:46:11 as ** along with 9 people skhadar neils zwang Evangelia hpaces Ema renatomilani kluck janasont
  • Structural divergence and distant relationships in proteins: evolution of the globins.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 290-301.
    by JT Lecomte, DA Vuletich, AM Lesk
    posted to evolution sequence structure by cjeans on 2007-11-26 06:46:33 as **
  • Exploring a Phylogenetic Approach for the Detection of Correlated Substitutions in Proteins
    Mol Biol Evol, Vol. 17, No. 11. (1 November 2000), pp. 1753-1759.
    by Pierre Tuff, Pierre Darlu
    posted to coevolution evolution sequence by cjeans on 2007-11-26 06:33:55 as ** along with 1 person tale
  • The constraints protein-protein interactions place on sequence divergence.
    J Mol Biol, Vol. 324, No. 3. (29 November 2002), pp. 399-407.
    by SA Teichmann
    posted to ppi sequence by cjeans on 2007-11-26 06:06:24 as ** along with 3 people bjorns chad_davis Ema
  • Sequence search algorithm assessment and testing toolkit (SAT).
    Bioinformatics, Vol. 16, No. 2. (February 2000), pp. 104-110.
    by J Park, L Holm, C Chothia
    posted to sequence by cjeans on 2007-11-26 02:31:08 as **
  • Scoring residue conservation.
    Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241.
    by WS Valdar
    posted to evolution sequence by cjeans on 2007-11-26 02:23:32 as ** along with 7 people and 2 groups barry pansapiens bicko sriram_s sobolevnrm chad_davis marti structural_bioinformatics Bioinformatics
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to coevolution correlated-mutation ppi sequence by cjeans on 2007-11-26 00:46:48 as ** along with 7 people bicko gbart ramensky tale mingzhi friendpine Lombardo_7
  • Detection and reduction of evolutionary noise in correlated mutation analysis
    Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253.
    by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz
    posted to coevolution correlated-mutation sequence by cjeans on 2007-11-25 10:45:00 as ** along with 2 people and 2 groups barry gbart structural_bioinformatics Bioinformatics
  • Prediction of distant residue contacts with the use of evolutionary information.
    Proteins, Vol. 58, No. 4. (1 March 2005), pp. 935-949.
    by S Vicatos, BV Reddy, Y Kaznessis
    posted to coevolution correlated-mutation sequence structure by cjeans on 2007-11-25 10:44:34 as **
  • PLoS ONE: Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis
    posted to expression microarray regulation sequence tfbs by cjeans on 2007-11-25 03:00:29 as **
  • Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1107-1118.
    by H Yu, NM Luscombe, HX Lu, X Zhu, Y Xia, JD Han, N Bertin, S Chung, M Vidal, M Gerstein
    posted to evolution ppi prediction sequence by cjeans on 2007-11-22 01:34:22 as ** along with 6 people bicko dragonrez chad_davis balajis koller cerca
  • PLoS ONE: Evolutionarily Conserved Protein Sequences of Influenza A Viruses, Avian and Human, as Vaccine Targets
    posted to sequence virus by cjeans on 2007-11-22 00:29:07 as **
  • Multiple spaced seeds for homology search.
    Bioinformatics (5 September 2007)
    by Lucian Ilie, Silvana Ilie
    posted to homology sequence by cjeans on 2007-11-17 02:40:46 as ** along with 2 people treangen nedwards
  • The Global Landscape of Sequence Diversity
    Genome Biology, Vol. 8 (08 November 2007), R238.
    by Jose M Peregrin-Alvarez, John Parkinson
    posted to sequence by cjeans on 2007-11-14 06:04:48 as ** along with 4 people skhadar gpalidwor hpaces ale
  • Domain assignment for protein structures using a consensus approach: Characterization and analysis
    Protein Sci, Vol. 7, No. 2. (1 February 1998), pp. 233-242.
    by S Jones, M Stewart, A Michie, MB Swindells, C Orengo, JM Thornton
    posted to domain sequence structure by cjeans on 2007-11-13 07:37:56 as ** along with 1 person gulkur
  • A combined transmembrane topology and signal peptide prediction method.
    J Mol Biol, Vol. 338, No. 5. (14 May 2004), pp. 1027-1036.
    by L Käll, A Krogh, EL Sonnhammer
    posted to sequence by cjeans on 2007-11-12 08:35:33 as ** along with 1 person xingxu
  • Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins.
    Protein Sci, Vol. 7, No. 2. (February 1998), pp. 445-456.
    by M Gerstein, M Levitt
    posted to domain sequence structure by cjeans on 2007-11-12 08:32:17 as **
  • The HSSP data base of protein structure-sequence alignments.
    Nucleic Acids Res, Vol. 21, No. 13. (1 July 1993), pp. 3105-3109.
    by C Sander, R Schneider
    posted to sequence structure by cjeans on 2007-11-12 08:23:43 as **
  • Protein sequence databases.
    Curr Opin Chem Biol, Vol. 8, No. 1. (February 2004), pp. 76-80.
    by R Apweiler, A Bairoch, CH Wu
    posted to database protein sequence by cjeans on 2007-11-12 08:00:13 as **
  • UniProt archive.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3236-3237.
    by R Leinonen, FG Diez, D Binns, W Fleischmann, R Lopez, R Apweiler
    posted to database protein sequence by cjeans on 2007-11-12 07:58:54 as ** along with 1 person alanrw
  • UniProt: the Universal Protein knowledgebase.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by R Apweiler, A Bairoch, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to database protein sequence by cjeans on 2007-11-12 07:58:09 as ** along with 4 people dullhunk leelarcombe gisle PunkRock
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Bairoch, R Apweiler, CH Wu, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, DA Natale, C O'Donovan, N Redaschi, LS Yeh
    posted to database protein sequence by cjeans on 2007-11-12 07:57:15 as ** along with 7 people Cortel kuhn dullhunk fisherp happy_manatee myui incovoma
  • Plant protein annotation in the UniProt Knowledgebase.
    Plant Physiol, Vol. 138, No. 1. (May 2005), pp. 59-66.
    by M Schneider, A Bairoch, CH Wu, R Apweiler
    posted to database plant protein sequence by cjeans on 2007-11-12 07:55:55 as **
  • The Universal Protein Resource (UniProt): an expanding universe of protein information.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by CH Wu, R Apweiler, A Bairoch, DA Natale, WC Barker, B Boeckmann, S Ferro, E Gasteiger, H Huang, R Lopez, M Magrane, MJ Martin, R Mazumder, C O'Donovan, N Redaschi, B Suzek
    posted to database protein sequence by cjeans on 2007-11-12 07:54:50 as ** along with 6 people BragilMassoud miguel anwazo dgront Haggan cdallett
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by
    posted to database protein sequence by cjeans on 2007-11-12 07:50:47 as ** along with 7 people jyuh dullhunk CitoJam massivemayhem saunders sim82 sgoetz
  • ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 267-269.
    by F Corpet, F Servant, J Gouzy, D Kahn
    posted to database domain sequence by cjeans on 2007-11-12 01:02:50 as ** along with 1 person gulkur
  • Modular arrangement of proteins as inferred from analysis of homology.
    Protein Sci, Vol. 3, No. 3. (March 1994), pp. 482-492.
    by EL Sonnhammer, D Kahn
    posted to domain sequence by cjeans on 2007-11-11 11:25:03 as ** along with 1 person gulkur
  • Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
    Proceedings of the National Academy of Sciences, Vol. 95, No. 11. (26 May 1998), pp. 6073-6078.
    by Steven E Brenner, Cyrus Chothia, Tim J Hubbard
    posted to sequence structure by cjeans on 2007-11-11 10:08:48 as **
  • Computational Analysis of Mouse piRNA Sequence and Biogenesis
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e222.
    by Doron Betel, Robert Sheridan, Debora S Marks, Chris Sander
    posted to rna sequence by cjeans on 2007-11-10 02:41:56 as ** along with 4 people cabbagezs oelemento fpattyn altotor
  • PLoS ONE: Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes
    posted to motif sequence tfbs by cjeans on 2007-11-09 01:03:33 as **
  • CD-Search: protein domain annotations on the fly.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by A Marchler-Bauer, SH Bryant
    posted to database domain sequence by cjeans on 2007-11-08 08:28:30 as ** along with 1 person gulkur
  • CDD: a curated Entrez database of conserved domain alignments.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 383-387.
    by A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, DI Hurwitz, JD Jackson, AR Jacobs, CJ Lanczycki, CA Liebert, C Liu, T Madej, GH Marchler, R Mazumder, AN Nikolskaya, AR Panchenko, BS Rao, BA Shoemaker, V Simonyan, JS Song, PA Thiessen, S Vasudevan, Y Wang, RA Yamashita, JJ Yin, SH Bryant
    posted to database domain sequence by cjeans on 2007-11-08 08:27:41 as ** along with 4 people balajis maryee jteyra gulkur
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to hmm sequence by cjeans on 2007-11-08 08:05:26 as ** along with 9 people miguel chad_davis eweaver dgront rabio suizan nklee yoanjacquemin ca3295
  • Hidden Markov models
    Current Opinion in Structural Biology, Vol. 6, No. 3. (June 1996), pp. 361-365.
    by Sean R Eddy
    posted to hmm sequence by cjeans on 2007-11-08 08:03:39 as **
  • Hidden Markov models in computational biology. Applications to protein modeling.
    J Mol Biol, Vol. 235, No. 5. (4 February 1994), pp. 1501-1531.
    by A Krogh, M Brown, IS Mian, K Sjölander, D Haussler
    posted to domain hmm sequence by cjeans on 2007-11-08 07:56:33 as ** along with 2 people rabio wenhan
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