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cisevols mammals [119 articles]

Neue Publikationen in cisevols Bibliothek eingetragen unter dem Bezeichner: mammals. You can also see everyone's mammals.
  • Evolution of the mammalian transcription factor binding repertoire via transposable elements.
    Genome research (5 August 2008)
    by Guillaume Bourque, Bernard Leong, Vinsensius B B Vega, Xi Chen, Yen Ling L Lee, Kandhadayar G G Srinivasan, Joon-Lin L Chew, Yijun Ruan, Chia-Lin L Wei, Huck-Hui H Ng, Edison T T Liu
    posted to transposon mammals cis-regulatory by cisevol on 2008-09-30 08:23:52 as ** along with 1 person and 2 groups carlfulp cis-regulatory-evolution BergmanLab
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to cis-regulatory mammals by cisevol on 2008-08-19 12:05:55 as ** along with 7 people and 2 groups alhufton djkt bpcusack aprasad pradiptaray caseybrown maximilianh BergmanLab cis-regulatory-evolution
  • A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity.
    Genome research (7 August 2008)
    by Aileen M M Smith, Maria-Jose J Sanchez, George A A Follows, Sarah Kinston, Ian J J Donaldson, Anthony R R Green, Berthold Göttgens
    posted to cis-regulatory mammals transposon by cisevol on 2008-08-11 19:50:59 as ** along with 1 person and 2 groups maximilianh BergmanLab cis-regulatory-evolution
  • Retroviral promoters in the human genome
    Bioinformatics, Vol. 24, No. 14. (15 July 2008), pp. 1563-1567.
    by Andrew B Conley, Jittima Piriyapongsa, King I Jordan
    posted to mammals promoter transposon by cisevol on 2008-07-10 13:36:29 as ** along with 2 people and 2 groups idonaldson maximilianh BergmanLab cis-regulatory-evolution
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to cis-regulatory mammals transposon by cisevol on 2008-05-29 22:08:57 as ** along with 2 people and 2 groups pradiptaray bryankr BergmanLab cis-regulatory-evolution
  • Regulatory divergence modifies limb length between mammals
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 141-151.
    by Chris J Cretekos, Ying Wang, Eric D Green, Nisc, James F Martin, John J Rasweiler, Richard R Behringer
    posted to cis-regulatory mammals by cisevol on 2008-05-29 10:25:38 as ** along with 2 people and 1 group carlfulp dchughes cis-regulatory-evolution
  • Resurrection of DNA function in vivo from an extinct genome.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by AJ Pask, RR Behringer, MB Renfree
    posted to ancient_dna cis-regulatory mammals by cisevol on 2008-05-23 19:08:52 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to cis-regulatory mammals by cisevol on 2008-05-18 14:41:37 as ** along with 2 people and 1 group Stew aprasad cis-regulatory-evolution
  • Retrotransposition as a Source of New Promoters.
    Mol Biol Evol (25 March 2008)
    by Kohji Okamura, Kenta Nakai
    posted to cis-regulatory mammals by cisevol on 2008-05-18 14:40:54 as ** along with 3 people and 1 group rschulz clearbluespring inesdesantiago cis-regulatory-evolution
  • Report of a chimeric origin of transposable elements in a bovine-coding gene.
    Genetics and molecular research : GMR, Vol. 7, No. 1. (2008), pp. 107-116.
    by LM Almeida, ME Amaral, IT Silva, WA Silva, PK Riggs, CM Carareto
    posted to mammals transposon by cisevol on 2008-05-16 15:24:54 as ** along with 1 group BergmanLab
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to cis-regulatory mammals transposon by cisevol on 2008-05-16 15:21:46 as ** along with 1 person and 4 groups dchughes G4ID Genetics-of-Gambling BergmanLab cis-regulatory-evolution
  • Transposable element fragments in protein-coding regions and their contributions to human functional proteins
    Gene, Vol. 401, No. 1-2. (15 October 2007), pp. 165-171.
    by Ming Wu, Li Li, Zhirong Sun
    posted to mammals transposon by cisevol on 2008-04-26 19:51:20 as ** along with 4 people and 3 groups dchughes N0131826 idonaldson paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to cis-regulatory mammals transposon by cisevol on 2008-04-26 19:38:10 as ** along with 1 person and 2 groups FMoncini BergmanLab cis-regulatory-evolution
  • Overlapping genes in the human and mouse genomes
    BMC Genomics, Vol. 9 (14 April 2008), 169.
    by Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:34:08 as ** along with 1 group BergmanLab
  • How many human genes can be defined as housekeeping with current expression data?
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Jiang Zhu, Fuhong He, Shuhui Song, Jing Wang, Jun Yu
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:25 as ** along with 4 people jfr idonaldson jyuh yoonk
  • Non-random retention of protein-coding overlapping genes in Metazoa
    BMC Genomics, Vol. 9 (16 April 2008), 174.
    by Giulia Solda', Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria L Tenchini, Francesca D Ciccarelli
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:08 as ** along with 1 person and 1 group maximilianh BergmanLab
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to mammals overlapping_gene transposon by cisevol on 2008-04-16 13:01:04 as ** along with 1 person and 1 group pradiptaray BergmanLab
  • Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs
    BMC Genomics, Vol. 9 (02 April 2008), 152.
    by Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    posted to cis-regulatory mammals by cisevol on 2008-04-04 20:12:38 as ** along with 1 group cis-regulatory-evolution
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to mammals transposon by cisevol on 2008-03-26 11:40:35 as ** along with 1 person and 1 group yoanjacquemin BergmanLab
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to mammals transposon by cisevol on 2008-03-25 22:07:42 as ** along with 3 people and 1 group yoanjacquemin FMoncini wenhan BergmanLab
  • Great exaptations
    Journal of Biology, Vol. 7 (15 February 2008), 5.
    by Kathleen H Burns, Jef D Boeke
    posted to mammals transposon by cisevol on 2008-02-26 11:48:41 as ** along with 1 group BergmanLab
  • Comparative expression analysis uncovers novel features of endogenous antisense transcription.
    Hum Mol Genet (18 February 2008)
    by Yuki Okada, Chiaki Tashiro, Koji Numata, Kazufumi Watanabe, Hajime Nakaoka, Naoyuki Yamamoto, Kazue Okubo, Rieko Ikeda, Rintaro Saito, Akio Kanai, Kuniya Abe, Masaru Tomita, Hidenori Kiyosawa
    posted to mammals overlapping_gene by cisevol on 2008-02-20 21:33:15 as ** along with 1 group BergmanLab
  • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
    Genome Res, Vol. 17, No. 8. (August 2007), pp. 1139-1145.
    by M Krull, M Petrusma, W Makalowski, J Brosius, J Schmitz
    posted to mammals transposon by cisevol on 2008-02-20 11:30:00 as ** along with 2 people and 1 group dchughes FMoncini BergmanLab
  • Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
    BMC Molecular Biology, Vol. 8 (29 November 2007), 109.
    by Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
    posted to mammals transposon by cisevol on 2008-02-18 23:25:35 as ** along with 1 person and 1 group bpcusack BergmanLab
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol on 2008-02-05 21:22:12 as ** along with 6 people and 5 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol on 2008-02-05 21:18:50 as ** along with 1 person and 2 groups maximilianh cis-regulatory-evolution BergmanLab
  • Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1073-1078.
    by SJ Wheelan, Y Aizawa, JS Han, JD Boeke
    posted to mammals transposon by cisevol on 2008-02-05 21:08:47 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol on 2008-02-04 22:40:36 as ** along with 4 people and 2 groups djkt biomcgary bpcusack dchughes cis-regulatory-evolution BergmanLab
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
    posted to cis-regulatory mammals by cisevol on 2008-01-30 20:38:40 as ** along with 6 people and 1 group brant cjeans zwang idonaldson renatomilani jyuh cis-regulatory-evolution
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan I Montoya-Burgos, Konstantin Popadin, Leila Parand, Elliott H Margulies, National, Stylianos E Antonarakis
    posted to mammals noncoding by cisevol on 2008-01-30 20:36:12 as ** along with 4 people and 1 group djkt cjeans zwang aprasad cis-regulatory-evolution
  • A genome-wide screen for noncoding elements important in primate evolution
    BMC Evolutionary Biology, Vol. 8 (23 January 2008), 17.
    by Eliot C Bush, Bruce T Lahn
    posted to mammals noncoding by cisevol on 2008-01-28 09:38:13 as ** along with 1 group cis-regulatory-evolution
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol on 2008-01-20 22:36:40 as ** along with 6 people and 2 groups gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin cis-regulatory-evolution BergmanLab
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to mammals transposon by cisevol on 2008-01-18 00:48:51 as ** along with 4 people and 1 group bpb gpappas N0131826 yoanjacquemin BergmanLab
  • Multiple Organism Algorithm for Finding Ultraconserved Elements
    BMC Bioinformatics, Vol. 9 (11 January 2008), 15.
    by Scott Christley, Neil F Lobo, Greg Madey
    posted to mammals model noncoding by cisevol on 2008-01-12 15:11:22 as ** along with 2 people and 1 group fpattyn yoanjacquemin cis-regulatory-evolution
  • Maintenance of transposon-free regions throughout vertebrate evolution
    BMC Genomics, Vol. 8 (20 December 2007), 470.
    by Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
    posted to mammals noncoding transposon by cisevol on 2007-12-22 13:26:57 as ** along with 2 people and 2 groups blobbybirdman idonaldson cis-regulatory-evolution BergmanLab
  • Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399.
    by Diamantis Sellis, Astero Provata, Yannis Almirantis
    posted to mammals transposon by cisevol on 2007-12-14 14:17:39 as ** along with 1 person and 1 group dchughes BergmanLab
  • Compositional evolution of noncoding DNA in the human and chimpanzee genomes.
    Mol Biol Evol, Vol. 20, No. 2. (February 2003), pp. 278-286.
    by MT Webster, NG Smith, H Ellegren
    posted to mammals noncoding variation by cisevol on 2007-12-10 22:13:50 as ** along with 1 group cis-regulatory-evolution
  • SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements
    BMC Genetics, Vol. 8 (06 November 2007), 78.
    by Britta Mersch, Noa Sela, Gil Ast, Sandor Suhai, Agnes Hotz-Wagenblatt
    posted to mammals transposon by cisevol on 2007-11-25 22:54:11 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Conserved eukaryotic transposable elements and the evolution of gene regulation.
    Cell Mol Life Sci (20 November 2007)
    by J Jurka
    posted to cis-regulatory mammals noncoding transposon by cisevol on 2007-11-22 15:36:43 as ** along with 5 people and 2 groups gpappas dchughes Stew maximilianh idonaldson cis-regulatory-evolution BergmanLab
  • Repeated Recruitment of LTR Retrotransposons as Promoters by the Anti-Apoptotic Locus NAIP during Mammalian Evolution
    PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e10.
    by Mark T Romanish, Wynne M Lock, Louie N de Lagemaat, Catherine A Dunn, Dixie L Mager
    posted to cis-regulatory mammals transposon by cisevol on 2007-11-01 10:55:08 as ** along with 3 people and 4 groups dchughes Fei yoanjacquemin G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
  • Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time
    BMC Genomics, Vol. 8, No. 1. (2007)
    by Dorota Retelska, Emmanuel Beaudoing, Cedric Notredame, Victor C Jongeneel, Philipp Bucher
    posted to mammals noncoding by cisevol on 2007-11-01 10:17:23 as ** along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Using Reporter Gene Assays to Identify cis Regulatory Differences Between Humans and Chimpanzees
    Genetics, Vol. 176, No. 4. (1 August 2007), pp. 2069-2076.
    by Adrien Chabot, Ralla A Shrit, Ran Blekhman, Yoav Gilad
    posted to cis-regulatory mammals by cisevol on 2007-10-29 22:17:27 as ** along with 1 person and 1 group mimulus_99 cis-regulatory-evolution
  • Selective constraint on noncoding regions of hominid genomes.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by EC Bush, BT Lahn
    posted to mammals noncoding by cisevol on 2007-10-29 22:06:28 as ** along with 1 person and 1 group balicea cis-regulatory-evolution
  • Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences
    BMC Genomics, Vol. 8 (08 August 2007), 271.
    by Daniel Rico, Juan M Vaquerizas, Hernan Dopazo, Lisardo Bosca
    posted to cis-regulatory mammals by cisevol on 2007-10-29 13:52:22 as ** along with 1 group cis-regulatory-evolution
  • Functional noncoding sequences derived from SINEs in the mammalian genome.
    Genome Res (22 May 2006)
    by Hidenori Nishihara, Arian F A F Smit, Norihiro Okada
    posted to mammals noncoding transposon by cisevol on 2007-10-28 18:47:38 as ** along with 3 people and 3 groups dchughes mtagaya FMoncini G4ID Genetics-of-Gambling cis-regulatory-evolution
  • A family of conserved noncoding elements derived from an ancient transposable element
    PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11659-11664.
    by Xiaohui Xie, Michael Kamal, Eric S Lander
    posted to mammals noncoding transposon by cisevol on 2007-10-28 18:46:41 as ** along with 2 people and 4 groups dchughes cmm FAB-lab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • A large family of ancient repeat elements in the human genome is under strong selection
    PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.
    by Michael Kamal, Xiaohui Xie, Eric S Lander
    posted to mammals noncoding transposon by cisevol on 2007-10-28 18:45:59 as ** along with 4 people and 2 groups aprasad balicea cmm gjuggler FAB-lab cis-regulatory-evolution
  • A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e176.
    by Erika M Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D Makova
    posted to indel mammals noncoding by cisevol on 2007-10-28 18:28:58 as ** along with 2 people and 1 group aprasad djkt cis-regulatory-evolution
  • Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
    Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010.
    by Craig B Lowe, Gill Bejerano, David Haussler
    posted to mammals noncoding transposon by cisevol on 2007-10-28 15:55:20 as ** along with 3 people and 1 group bpb pradiptaray FMoncini cis-regulatory-evolution
  • Signatures of adaptive evolution within human non-coding sequence.
    Hum Mol Genet, Vol. 15 Suppl 2 (15 October 2006)
    by CP Ponting, G Lunter
    posted to mammals noncoding review by cisevol on 2007-10-27 17:35:43 as ** along with 2 people and 1 group eckart_bindewald bpcusack cis-regulatory-evolution
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