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cisevols library [271 articles]

Neue Artikel in cisevols Bibliothek.
  • Report of a chimeric origin of transposable elements in a bovine-coding gene.
    Genetics and molecular research : GMR, Vol. 7, No. 1. (2008), pp. 107-116.
    by LM Almeida, ME Amaral, IT Silva, WA Silva, PK Riggs, CM Carareto
    posted to transposon mammals by cisevol on 2008-05-16 15:24:54 as ** along with 1 group BergmanLab
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to transposon mammals cis-regulatory by cisevol on 2008-05-16 15:21:46 as ** along with 1 person and 4 groups dchughes cis-regulatory-evolution BergmanLab G4ID Genetics-of-Gambling
  • Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators.
    Molecular cell, Vol. 30, No. 1. (11 April 2008), pp. 98-107.
    by YE Leem, TL Ripmaster, FD Kelly, H Ebina, ME Heincelman, K Zhang, SI Grewal, CS Hoffman, HL Levin
    posted to fungi expression cis-regulatory by cisevol on 2008-05-10 09:06:08 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to model drosophila cis-regulatory by cisevol on 2008-04-30 19:02:30 as ** along with 2 people and 1 group xili03 maximilianh cis-regulatory-evolution
  • Transposable element fragments in protein-coding regions and their contributions to human functional proteins
    Gene, Vol. 401, No. 1-2. (15 October 2007), pp. 165-171.
    by Ming Wu, Li Li, Zhirong Sun
    posted to transposon mammals by cisevol on 2008-04-26 19:51:20 as ** along with 4 people and 3 groups dchughes N0131826 idonaldson paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to transposon mammals cis-regulatory by cisevol on 2008-04-26 19:38:10 as ** along with 1 person and 2 groups FMoncini cis-regulatory-evolution BergmanLab
  • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.
    J Mol Biol, Vol. 158, No. 4. (15 July 1982), pp. 573-597.
    by T Ikemura
    posted to fungi codon_bias by cisevol on 2008-04-25 12:49:50 as ** along with 1 person and 1 group bjorns BergmanLab
  • The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products.
    Genetics, Vol. 178, No. 3. (March 2008), pp. 1653-1660.
    by DM Stoebel, AM Dean, DE Dykhuizen
    posted to expression cost bacteria by cisevol on 2008-04-23 19:50:24 as ** along with 1 group BergmanLab
  • Overlapping genes in the human and mouse genomes
    BMC Genomics, Vol. 9 (14 April 2008), 169.
    by Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:34:08 as ** along with 1 group BergmanLab
  • How many human genes can be defined as housekeeping with current expression data?
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Jiang Zhu, Fuhong He, Shuhui Song, Jing Wang, Jun Yu
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:25 as ** along with 1 person idonaldson
  • Non-random retention of protein-coding overlapping genes in Metazoa
    BMC Genomics, Vol. 9 (16 April 2008), 174.
    by Giulia Solda', Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria L Tenchini, Francesca D Ciccarelli
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:08 as ** along with 1 group BergmanLab
  • ReXSpecies - a tool for the analysis of the evolution of gene regulation across species
    BMC Evolutionary Biology, Vol. 8 (14 April 2008), 111.
    by Stephan Struckmann, Marcos J Arauzo-Bravo, Hans R Schoeler, Rolland A Reinbold, Georg Fuellen
    posted to cis-regulatory model by cisevol on 2008-04-20 13:27:46 as ** along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to mammals overlapping_gene transposon by cisevol on 2008-04-16 13:01:04 as ** along with 1 group BergmanLab
  • Local conservation scores without a priori assumptions on neutral substitution rates
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Janis Dingel, Pavol Hanus, Niccolo Leonardi, Joachim Hagenauer, Juergen Zech, Jakob Mueller
    posted to model noncoding by cisevol on 2008-04-13 16:34:31 as ** along with 3 people and 2 groups aprasad maximilianh RamuAnandakrishnan cis-regulatory-evolution BergmanLab
  • [Reconstruction of ancestral regulatory signals along a transcription factor tree]
    Molekuliarnaia biologiia, Vol. 41, No. 5. (t 2007), pp. 918-925.
    by KIu Gorbunov, VA Liubetskiĭĭ
    posted to bacteria cis-regulatory by cisevol on 2008-04-06 08:00:36 as ** along with 1 group cis-regulatory-evolution
  • Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs
    BMC Genomics, Vol. 9 (02 April 2008), 152.
    by Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    posted to cis-regulatory mammals by cisevol on 2008-04-04 20:12:38 as ** along with 1 group cis-regulatory-evolution
  • Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1349-1361.
    by SG Hudson, MJ Garrett, JW Carlson, G Micklem, SE Celniker, ES Goldstein, SJ Newfeld
    posted to drosophila overlapping_gene by cisevol on 2008-03-28 07:23:37 as ** along with 1 group BergmanLab
  • Chimeric retrogenes suggest a role for the nucleolus in LINE amplification.
    FEBS Lett, Vol. 581, No. 16. (26 June 2007), pp. 2877-2882.
    by A Buzdin, E Gogvadze, MH Lebrun
    posted to chimera transposon by cisevol on 2008-03-26 11:43:00 as ** along with 1 group BergmanLab
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to mammals transposon by cisevol on 2008-03-26 11:40:35 as ** along with 1 person and 1 group yoanjacquemin BergmanLab
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to mammals transposon by cisevol on 2008-03-25 22:07:42 as ** along with 2 people and 1 group yoanjacquemin FMoncini BergmanLab
  • Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria
    BMC Genomics, Vol. 9 (17 March 2008), 128.
    by Abel, Evelyn G Gonzalez, Vladimir E Angarica, Ana, Julio Collado-Vides
    posted to bacteria cis-regulatory by cisevol on 2008-03-20 18:15:11 as ** along with 1 group cis-regulatory-evolution
  • Characterization of new hAT transposable elements in 12 Drosophila genomes.
    Genetica (14 March 2008)
    by Mauro de Freitas Ortiz, Elgion L Loreto
    posted to no-tag by cisevol on 2008-03-15 19:59:35 as ** along with 1 person and 1 group operon BergmanLab
  • Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model.
    J Comput Biol (11 March 2008)
    by Jing Wu, Jun Xie
    posted to cis-regulatory model by cisevol on 2008-03-13 19:45:10 as ** along with 2 people and 1 group maximilianh csdhwang BergmanLab
  • The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 783-793.
    by S Jeong, M Rebeiz, P Andolfatto, T Werner, J True, SB Carroll
    posted to cis-regulatory flies by cisevol on 2008-03-11 21:52:20 as ** along with 1 person and 1 group Stew cis-regulatory-evolution
  • Links between core promoter and basic gene features influence gene expression
    BMC Genomics, Vol. 9 (25 February 2008), 92.
    by Sandra Moshonov, Rofa Elfakess, Michal Golan-Mashiach, Hadar Sinvani, Rivka Dikstein
    posted to cis-regulatory by cisevol on 2008-02-29 09:36:38 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Great exaptations
    Journal of Biology, Vol. 7 (15 February 2008), 5.
    by Kathleen H Burns, Jef D Boeke
    posted to mammals transposon by cisevol on 2008-02-26 11:48:41 as ** along with 1 group BergmanLab
  • Transposable elements as tools for genomics and genetics in Drosophila
    Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71.
    by Edward Ryder, Steven Russell
    posted to drosophila p-element transposon by cisevol on 2008-02-23 13:48:18 as ** along with 2 people and 1 group RMGraze yulian2108 BergmanLab
  • Comparative expression analysis uncovers novel features of endogenous antisense transcription.
    Hum Mol Genet (18 February 2008)
    by Yuki Okada, Chiaki Tashiro, Koji Numata, Kazufumi Watanabe, Hajime Nakaoka, Naoyuki Yamamoto, Kazue Okubo, Rieko Ikeda, Rintaro Saito, Akio Kanai, Kuniya Abe, Masaru Tomita, Hidenori Kiyosawa
    posted to mammals overlapping_gene by cisevol on 2008-02-20 21:33:15 as ** along with 1 group BergmanLab
  • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
    Genome Res, Vol. 17, No. 8. (August 2007), pp. 1139-1145.
    by M Krull, M Petrusma, W Makalowski, J Brosius, J Schmitz
    posted to mammals transposon by cisevol on 2008-02-20 11:30:00 as ** along with 2 people and 1 group dchughes FMoncini BergmanLab
  • Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
    BMC Molecular Biology, Vol. 8 (29 November 2007), 109.
    by Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
    posted to mammals transposon by cisevol on 2008-02-18 23:25:35 as ** along with 1 group BergmanLab
  • Genetic Properties Influencing the Evolvability of Gene Expression.
    Science (24 May 2007)
    by Christian R R Landry, Bernardo Lemos, Scott A A Rifkin, W J J Dickinson, Daniel L L Hartl
    posted to cis-regulatory fungi microarray by cisevol on 2008-02-18 19:22:19 as ** along with 9 people and 3 groups jjray brant balicea sebastien_vigneau grahamc emarker heliopais caseybrown emptyhb EisenLab ParkinsonLab_at_MaRS cis-regulatory-evolution
  • TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by A Levy, N Sela, G Ast
    posted to transposon by cisevol on 2008-02-18 15:18:17 as ** along with 1 group BergmanLab
  • Transposable elements in Coffea (Gentianales: Rubiacea) transcripts and their role in the origin of protein diversity in flowering plants.
    Mol Genet Genomics (30 January 2008)
    by Fabrício R Lopes, Marcelo F Carazzolle, Gonçalo A Pereira, Carlos A Colombo, Claudia M Carareto
    posted to plants transposon by cisevol on 2008-02-11 22:45:29 as ** along with 1 person and 1 group natstreet BergmanLab
  • Origin and evolution of human microRNAs from transposable elements.
    Genetics (15 April 2007)
    by Jittima Piriyapongsa, Leonardo Mariño-Ramírez, I King K Jordan
    posted to mammals mirna transposon by cisevol on 2008-02-05 21:22:12 as ** along with 6 people and 5 groups gpappas tardigrade andersbj dchughes mtagaya emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
  • Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes.
    Gene, Vol. 311 (5 June 2003), pp. 1-11.
    by JM Casacuberta, N Santiago
    posted to plants transposon by cisevol on 2008-02-05 21:20:36 as ** along with 2 people and 1 group gpappas saru BergmanLab
  • Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.
    Proc Natl Acad Sci U S A (25 January 2008)
    by Angel Carlos C Roman, Dixan A A Benitez, Jose M M Carvajal-Gonzalez, Pedro M M Fernandez-Salguero
    posted to cis-regulatory mammals transposon by cisevol on 2008-02-05 21:18:50 as ** along with 1 person and 2 groups maximilianh cis-regulatory-evolution BergmanLab
  • Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1073-1078.
    by SJ Wheelan, Y Aizawa, JS Han, JD Boeke
    posted to mammals transposon by cisevol on 2008-02-05 21:08:47 as ** along with 1 person and 1 group paulcartwright BergmanLab
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to cis-regulatory mammals microarray transposon by cisevol on 2008-02-04 22:40:36 as ** along with 2 people and 2 groups djkt biomcgary cis-regulatory-evolution BergmanLab
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
    posted to cis-regulatory mammals by cisevol on 2008-01-30 20:38:40 as ** along with 5 people and 1 group brant cjeans zwang idonaldson renatomilani cis-regulatory-evolution
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan I Montoya-Burgos, Konstantin Popadin, Leila Parand, Elliott H Margulies, National, Stylianos E Antonarakis
    posted to mammals noncoding by cisevol on 2008-01-30 20:36:12 as ** along with 3 people and 1 group djkt cjeans zwang cis-regulatory-evolution
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to cis-regulatory fungi microarray by cisevol on 2008-01-30 20:35:13 as ** along with 8 people and 2 groups Jporci balicea kengg zwang biomcgary caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Computational discovery of cis-regulatory modules in Drosophila, without prior knowledge of motifs
    Genome Biology, Vol. 9, No. 1. (2008)
    by Andra Ivan, Marc Halfon, Saurabh Sinha
    posted to cis-regulatory flies model by cisevol on 2008-01-30 14:21:23 as ** along with 2 people and 1 group maximilianh csdhwang cis-regulatory-evolution
  • Evolutionary pattern of the gtwin retrotransposon in the Drosophila melanogaster subgroup.
    Genetica (4 August 2006)
    by A Ludwig, E L Loreto
    posted to drosophila gtwin transposon by cisevol on 2008-01-29 23:54:10 as ** along with 1 person and 1 group indigoviolet EisenLab
  • Evidence for recent horizontal transfer of gypsy-homologous LTR-retrotransposon gtwin into Drosophila erecta followed by its amplification with multiple aberrations.
    Gene, Vol. 396, No. 1. (1 July 2007), pp. 39-45.
    by AP Kotnova, IA Glukhov, NN Karpova, VB Salenko, NV Lyubomirskaya, YV Ilyin
    posted to drosophila gtwin transposon by cisevol on 2008-01-29 23:53:49 as ** along with 1 group BergmanLab
  • The origin of a novel gene through overprinting in Escherichia coli
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Luis Delaye, Alexander Deluna, Antonio Lazcano, Arturo Becerra
    posted to bacteria overlapping_gene by cisevol on 2008-01-28 18:27:22 as ** along with 1 group BergmanLab
  • Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    BMC Bioinformatics, Vol. 9 (23 January 2008), 37.
    by Rekin's Janky, Jacques van Helden
    posted to bacteria cis-regulatory model by cisevol on 2008-01-28 09:40:49 as ** along with 1 group cis-regulatory-evolution
  • A genome-wide screen for noncoding elements important in primate evolution
    BMC Evolutionary Biology, Vol. 8 (23 January 2008), 17.
    by Eliot C Bush, Bruce T Lahn
    posted to mammals noncoding by cisevol on 2008-01-28 09:38:13 as ** along with 1 group cis-regulatory-evolution
  • Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
    BMC Molecular Biology, Vol. 9 (14 January 2008), 6.
    by Hailing Jin, Vladimir Vacic, Thomas Girke, Stefano Lonardi, Jian-Kang Zhu
    posted to arabidopsis by cisevol on 2008-01-21 12:07:20 as ** along with 1 group BergmanLab
  • Human cis natural antisense transcripts initiated by transposable elements.
    Trends Genet (11 January 2008)
    by Andrew B B Conley, Wolfgang J J Miller, I King K Jordan
    posted to cis-regulatory mammals transposon by cisevol on 2008-01-20 22:36:40 as ** along with 6 people and 2 groups gpappas balicea dchughes sebastien_vigneau timflutre yoanjacquemin cis-regulatory-evolution BergmanLab
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to mammals transposon by cisevol on 2008-01-18 00:48:51 as ** along with 4 people and 1 group bpb gpappas N0131826 yoanjacquemin BergmanLab
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