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choonpengs force-probe-md [61 articles]

Neue Publikationen in choonpengs Bibliothek eingetragen unter dem Bezeichner: force-probe-md. You can also see everyone's force-probe-md.
  • Mechanoenzymatics of titin kinase.
    Proceedings of the National Academy of Sciences of the United States of America (2 September 2008)
    by Elias M M Puchner, Alexander Alexandrovich, Ay Lin L Kho, Ulf Hensen, Lars V V Schäfer, Birgit Brandmeier, Frauke Gräter, Helmut Grubmüller, Hermann E E Gaub, Mathias Gautel
    posted to single-molecule-techniques force-probe-md by choonpeng on 2008-09-05 04:03:48 as ***
  • Molecular mechanics of filamin's rod domain.
    Biophysical journal, Vol. 94, No. 3. (1 February 2008), pp. 1075-1083.
    by KS Kolahi, MR Mofrad
    posted to force-probe-md mechanotransduction by choonpeng on 2008-07-10 12:47:19 as ****
  • Superelasticity, energy dissipation and strain hardening of vimentin coiled-coil intermediate filaments: atomistic and continuum studies
    Journal of Materials Science, Vol. 42, No. 21. (November 2007), pp. 8771-8787.
    by Theodor Ackbarow, Markus Buehler
    posted to force-probe-md by choonpeng on 2008-07-01 01:52:04 as ***
  • Molecular Dynamics Study of Talin-Vinculin Binding.
    Biophysical journal (11 April 2008)
    by Seung E E Lee, Surasak Chunsrivirot, Roger D D Kamm, Mohammad R K R Mofrad
    posted to cell-adhesion force-probe-md by choonpeng on 2008-06-27 09:12:00 as *** along with 1 person hsekiguc
  • Indirect Role of Ca2+ in the Assembly of Extracelluar Matrix Proteins
    Biophys. J. (21 March 2008), biophysj.108.129106.
    by Jiankuai Diao, Emad Tajkhorshid
    posted to force-probe-md by choonpeng on 2008-06-20 04:06:40 as **** along with 1 person paulschlesinger
  • Importin-[beta]: Structural and Dynamic Determinants of a Molecular Spring
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 906-915.
    by Ulrich Zachariae, Helmut Grubmüller
    posted to force-probe-md by choonpeng on 2008-06-11 09:57:33 as read along with 1 person zwang
  • Steered molecular dynamics investigations of protein function
    Journal of Molecular Graphics and Modelling, Vol. 19, No. 1. (February 2001), pp. 13-25.
    by Barry Isralewitz, Jerome Baudry, Justin Gullingsrud, Dorina Kosztin, Klaus Schulten
    posted to force-probe-md by choonpeng on 2008-06-03 02:53:49 as *** along with 1 person LamBras
  • Mechanical unfolding intermediates in titin modules
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 100-103.
    by Piotr E Marszalek, Hui Lu, Hongbin Li, Mariano Carrion-Vazquez, Andres F Oberhauser, Klaus Schulten, Julio M Fernandez
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-05-03 12:53:37 as **** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Mechanisms for flow-enhanced cell adhesion.
    Annals of biomedical engineering, Vol. 36, No. 4. (April 2008), pp. 604-621.
    by C Zhu, T Yago, J Lou, VI Zarnitsyna, RP McEver
    posted to cell-adhesion force-probe-md mechanotransduction by choonpeng on 2008-04-23 08:34:09 as ***
  • Extending Bell's model: how force transducer stiffness alters measured unbinding forces and kinetics of molecular complexes
    Biophys. J. (4 January 2008), biophysj.107.114454.
    by Emily B Walton, Sunyoung Lee, Krystyn J Van Vliet
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-18 12:40:24 as *** along with 2 people bobturner paulschlesinger
  • Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20268-20273.
    by M Mickler, RI Dima, H Dietz, C Hyeon, D Thirumalai, M Rief
    posted to force-probe-md single-molecule-techniques by choonpeng on 2008-04-14 01:37:12 as ***
  • How Force Might Activate Talin's Vinculin Binding Sites: SMD Reveals a Structural Mechanism.
    PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008)
    by Vesa P Hytönen, Viola Vogel
    posted to force-probe-md mechanotransduction by choonpeng on 2008-03-07 09:00:14 as read along with 1 person hsekiguc
  • Mechanical Unbinding of A[beta] Peptides from Amyloid Fibrils
    Journal of Molecular Biology, Vol. 373, No. 3. (26 October 2007), pp. 785-800.
    by Prabhu E Raman, Takako Takeda, Valeri Barsegov, Dmitri K Klimov
    posted to force-probe-md mechanical-unfolding by choonpeng on 2008-02-28 09:55:28 as *****
  • Single-molecule force spectroscopy reveals a mechanically stable protein fold and the rational tuning of its mechanical stability.
    Proc Natl Acad Sci U S A, Vol. 104, No. 22. (29 May 2007), pp. 9278-9283.
    by D Sharma, O Perisic, Q Peng, Y Cao, C Lam, H Lu, H Li
    posted to force-probe-md mechanical-unfolding protein-mechanics single-molecule-techniques by choonpeng on 2008-02-22 10:45:31 as read
  • Structural Determinants of Lateral Gate Opening in the Protein Translocon
    Biochemistry, Vol. 46, No. 39. (2 October 2007), pp. 11147-11157.
    by J Gumbart, K Schulten
    posted to force-probe-md protein-translocation by choonpeng on 2008-01-25 07:29:39 as **
  • Computer simulation of I27 translocation through ClpY reveals a critical role of protein mechanical strength and local stability.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 1213-1216.
    by G Feng, H Lu
    posted to force-probe-md protein-translocation by choonpeng on 2008-01-22 03:05:22 as ****
  • Axis-dependent anisotropy in protein unfolding from integrated nonequilibrium single-molecule experiments, analysis, and simulation.
    Proc Natl Acad Sci U S A (19 December 2007)
    by Rene A A Nome, Jason Ming M Zhao, Wouter D D Hoff, Norbert F F Scherer
    posted to force-probe-md protein-folding single-molecule-techniques by choonpeng on 2007-12-27 03:03:08 as read
  • Stretching to understand proteins - A survey of the Protein Data Bank.
    Biophys J (17 August 2007)
    by Joanna Ida I Sulkowska, Marek Cieplak
    posted to coarse-grained force-probe-md by choonpeng on 2007-11-06 10:09:27 as **** along with 1 person paulschlesinger
  • From the Cover: Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of alpha-helical and beta-sheet protein domains
    Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16410-16415.
    by Theodor Ackbarow, Xuefeng Chen, Sinan Keten, Markus J Buehler
    posted to force-probe-md protein-organization protein-stability by choonpeng on 2007-10-31 09:00:49 as read along with 1 person cactus
  • Forced detachment of the CD2-CD58 complex.
    Biophys J, Vol. 84, No. 4. (April 2003), pp. 2223-2233.
    by MV Bayas, K Schulten, D Leckband
    posted to force-probe-md protein-folding protein-interaction salt-bridge by choonpeng on 2007-09-04 11:11:08 as read
  • Mechanical response and conformational changes of alpha-actinin domains during unfolding: a molecular dynamics study.
    Biomech Model Mechanobiol (18 November 2006)
    by Monica Soncini, Simone Vesentini, Davide Ruffoni, Mario Orsi, Marco A Deriu, Alberto Redaelli
    posted to force-probe-md by choonpeng on 2007-09-04 10:47:59 as read
  • Exact Low-Force Kinetics from High-Force Single-Molecule Unfolding Events.
    Biophys J (17 August 2007)
    by Jeremiah Nummela, Ioan Andricioaei
    posted to force-probe-md methodology by choonpeng on 2007-08-29 06:23:31 as ***
  • Simulations of multi-directional forced unfolding of titin I27.
    J Mol Graph Model, Vol. 24, No. 5. (March 2006), pp. 396-403.
    by RD Toofanny, PM Williams
    posted to force-probe-md implicit-solvent by choonpeng on 2007-08-26 14:37:08 as read
  • Stretching the immunoglobulin 27 domain of the titin protein: the dynamic energy landscape.
    Biophys J, Vol. 91, No. 9. (1 November 2006), pp. 3446-3455.
    by N Duff, NH Duong, DJ Lacks
    posted to force-probe-md by choonpeng on 2007-08-26 13:29:43 as read
  • Examining the influence of linkers and tertiary structure in the forced unfolding of multiple-repeat spectrin molecules.
    Biophys J, Vol. 91, No. 9. (1 November 2006), pp. 3436-3445.
    by S Paramore, GA Voth
    posted to force-probe-md modular by choonpeng on 2007-08-26 13:29:24 as ***
  • Origin of mechanical strength of bovine carbonic anhydrase studied by molecular dynamics simulation.
    Biophys J, Vol. 87, No. 6. (December 2004), pp. 4007-4020.
    by S Ohta, MT Alam, H Arakawa, A Ikai
    posted to force-probe-md implicit-solvent by choonpeng on 2007-08-26 06:16:03 as read
  • Tuning the mechanical stability of fibronectin type III modules through sequence variations.
    Structure, Vol. 12, No. 1. (January 2004), pp. 21-30.
    by D Craig, M Gao, K Schulten, V Vogel
    posted to force-probe-md mechanotransduction modular by choonpeng on 2007-08-20 10:43:25 as ***
  • Elastic properties, Young's modulus determination and structural stability of the tropocollagen molecule: a computational study by steered molecular dynamics.
    J Biomech, Vol. 38, No. 7. (July 2005), pp. 1527-1533.
    by AC Lorenzo, ER Caffarena
    posted to force-probe-md by choonpeng on 2007-08-18 08:55:53 as read
  • Experiments Suggest that Simulations May Overestimate Electrostatic Contributions to the Mechanical Stability of a Fibronectin Type III Domain.
    J Mol Biol (9 June 2007)
    by Sean P P Ng, Jane Clarke
    posted to force-probe-md single-molecule-techniques by choonpeng on 2007-08-03 09:41:10 as read along with 1 person and 1 group cat_worth structural_bioinformatics
  • Simulated Refolding of Stretched Titin Immunoglobulin Domains
    Biophys. J., Vol. 81, No. 4. (1 October 2001), pp. 2268-2277.
    by Mu Gao, Hui Lu, Klaus Schulten
    posted to force-probe-md by choonpeng on 2007-07-25 13:18:03 as ***
  • Secondary and Tertiary Structure Elasticity of Titin Z1Z2 and a Titin Chain Model.
    Biophys J, Vol. 93 (10 April 2007), pp. 1719-1735.
    by Eric HH Lee, Jen Hsin, Olga Mayans, Klaus Schulten
    posted to force-probe-md modular by choonpeng on 2007-07-20 11:13:34 as read
  • Change of the unbinding mechanism upon a mutation: a molecular dynamics study of an antibody-hapten complex.
    Protein Sci, Vol. 14, No. 10. (October 2005), pp. 2499-2514.
    by R Curcio, A Caflisch, E Paci
    posted to force-probe-md salt-bridge by choonpeng on 2007-07-18 13:37:07 as **
  • Conversion between three conformational states of integrin I domains with a C-terminal pull spring studied with molecular dynamics.
    Structure, Vol. 12, No. 12. (December 2004), pp. 2137-2147.
    by M Jin, I Andricioaei, TA Springer
    posted to force-probe-md mechanotransduction by choonpeng on 2007-07-11 04:13:09 as read
  • A structural model for force regulated integrin binding to fibronectin's RGD-synergy site
    Matrix Biology, Vol. 21, No. 2. (March 2002), pp. 139-147.
    by Andre Krammer, David Craig, Wendy E Thomas, Klaus Schulten, Viola Vogel
    posted to force-probe-md mechanotransduction by choonpeng on 2007-07-11 02:22:52 as ***
  • Force-induced activation of Talin and its possible role in focal adhesion mechanotransduction.
    J Biomech, Vol. 40, No. 9. (1 June 2007), pp. 2096-2106.
    by Seung E Lee, Roger D Kamm, Mohammad R Mofrad
    posted to force-probe-md mechanotransduction by choonpeng on 2007-07-06 00:45:00 as read along with 1 person hsekiguc
  • Mechanics of Force Propagation in TonB-Dependent Outer Membrane Transport.
    Biophys J, Vol. 93, No. 2. (15 July 2007), pp. 496-504.
    by J Gumbart, MC Wiener, E Tajkhorshid
    posted to force-probe-md mechanotransduction by choonpeng on 2007-07-03 05:22:10 as read
  • Single-molecule experiments in vitro and in silico.
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1144-1148.
    by M Sotomayor, K Schulten
    posted to force-probe-md review by choonpeng on 2007-06-25 06:18:10 as **** along with 2 people and 1 group skoch3 hsekiguc Koch_Lab
  • Molecular mechanisms of cellular mechanics.
    Phys Chem Chem Phys, Vol. 8, No. 32. (28 August 2006), pp. 3692-3706.
    by M Gao, M Sotomayor, E Villa, EH Lee, K Schulten
    posted to force-probe-md mechanotransduction by choonpeng on 2007-06-25 06:03:59 as read along with 1 person wilsoros
  • Mechanical resistance of proteins explained using simple molecular models.
    Biophys J, Vol. 90, No. 1. (1 January 2006), pp. 287-297.
    by DK West, DJ Brockwell, PD Olmsted, SE Radford, E Paci
    posted to coarse-grained force-probe-md go-model by choonpeng on 2007-06-24 10:23:37 as read
  • Pulling geometry defines the mechanical resistance of a beta-sheet protein.
    Nat Struct Biol, Vol. 10, No. 9. (September 2003), pp. 731-737.
    by DJ Brockwell, E Paci, RC Zinober, GS Beddard, PD Olmsted, DA Smith, RN Perham, SE Radford
    posted to force-probe-md implicit-solvent single-molecule-techniques by choonpeng on 2007-06-19 10:47:51 as read along with 1 person ruudvanleeuwen
  • Mechanically Induced Titin Kinase Activation Studied by Force-Probe Molecular Dynamics Simulations
    Biophys. J., Vol. 88, No. 2. (1 February 2005), pp. 790-804.
    by Frauke Grater, Jianhua Shen, Hualiang Jiang, Mathias Gautel, Helmut Grubmuller
    posted to force-probe-md mechanotransduction by choonpeng on 2007-06-18 14:37:39 as read along with 1 person FBerkemeier
  • Mechanotransduction involving multimodular proteins: converting force into biochemical signals.
    Annu Rev Biophys Biomol Struct, Vol. 35 (2006), pp. 459-488.
    by V Vogel
    posted to force-probe-md mechanotransduction by choonpeng on 2007-04-10 01:59:05 as read along with 1 person operon
  • Fluctuations of primary ubiquitin folding intermediates in a force clamp
    Journal of Structural Biology, Vol. 157, No. 3. (March 2007), pp. 557-569.
    by Frauke Grater, Helmut Grubmuller
    posted to force-probe-md protein-folding by choonpeng on 2007-03-24 10:47:57 as ***
  • Pump-probe molecular dynamics as a tool for studying protein motion and long range coupling
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 2. (2006), pp. 347-361.
    by Kim Sharp, John J Skinner
    posted to force-probe-md long-range-interactions by choonpeng on 2007-03-24 06:22:37 as read along with 3 people and 3 groups barry lna sobolevnrm structural_bioinformatics Bioinformatics baker-group
  • Mechanical Unfolding of TNfn3: The Unfolding Pathway of a fnIII Domain Probed by Protein Engineering, AFM and MD Simulation
    Journal of Molecular Biology, Vol. 350, No. 4. (22 July 2005), pp. 776-789.
    by Sean P Ng, Ross W Rounsevell, Annette Steward, Christian D Geierhaas, Philip M Williams, Emanuele Paci, Jane Clarke
    posted to force-probe-md implicit-solvent mechanical-unfolding single-molecule-techniques by choonpeng on 2007-02-03 03:06:19 as read
  • Steered molecular dynamics studies of titin I1 domain unfolding.
    Biophys J, Vol. 83, No. 6. (December 2002), pp. 3435-3445.
    by M Gao, M Wilmanns, K Schulten
    posted to force-probe-md by choonpeng on 2006-12-30 09:08:10 as read
  • Thermal versus mechanical unfolding of ubiquitin
    Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 3. (2006), pp. 759-766.
    by Anders Irbäck, Simon Mitternacht
    posted to force-probe-md high-t-md by choonpeng on 2006-12-29 02:40:08 as *****
  • Spectrin domains lose cooperativity in forced unfolding.
    Biophys J (3 November 2006)
    by Lucy G Randles, Ross W Rounsevell, Jane Clarke
    posted to cooperativity force-probe-md by choonpeng on 2006-12-29 02:26:26 as **
  • Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin.
    Biophys J (27 October 2006)
    by Mai Suan S Li, Maxim Kouza, Chin-Kun K Hu
    posted to coarse-grained force-probe-md high-t-md langevin-dynamics by choonpeng on 2006-12-29 02:24:29 as ***
  • Unbinding of the streptavidin-biotin complex by atomic force microscopy: A hybrid simulation study
    The Journal of Chemical Physics, Vol. 125, No. 10. (2006)
    by Jian Zhou, Luzheng Zhang, Yongsheng Leng, Heng K Tsao, Yu J Sheng, Shaoyi Jiang
    posted to force-probe-md by choonpeng on 2006-09-18 08:38:21 as ** along with 1 person hsekiguc
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