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choonpengs library [952 articles]

Neue Artikel in choonpengs Bibliothek.
  • The type III secretion system tip complex and translocon
    Molecular Microbiology, Vol. 68, No. 5. (June 2008), pp. 1085-1095.
    by Mueller, , Broz, , Cornelis,
    posted to ttss review by choonpeng on 2008-07-23 05:31:35 as ***
  • Temperature-induced unfolding pathway of a type III antifreeze protein: Insight from molecular dynamics simulation.
    Journal of molecular graphics & modelling (16 March 2008)
    by Sangeeta Kundu, Debjani Roy
    posted to high-t-md by choonpeng on 2008-07-22 09:31:21 as ***
  • Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates.
    Biophys. J., Vol. 65, No. 6. (1 December 1993), pp. 2304-2312.
    by S Vijayakumar, S Vishveshwara, G Ravishanker, DL Beveridge
    posted to protein-folding high-t-md by choonpeng on 2008-07-22 07:56:59 as ****
  • Interaction of the disordered terminal regions of flagellin upon flagellar filament formation.
    FEBS letters, Vol. 535, No. 1-3. (30 January 2003), pp. 66-70.
    by Z Gugolya, A Muskotál, A Sebestyén, Z Diószeghy, F Vonderviszt
    posted to flagellin by choonpeng on 2008-07-22 00:37:53 as ***
  • Thermal denaturing of mutant lysozyme with both the OPLSAA and the CHARMM force fields.
    J Am Chem Soc, Vol. 128, No. 41. (18 October 2006), pp. 13388-13395.
    by M Eleftheriou, RS Germain, AK Royyuru, R Zhou
    posted to high-t-md by choonpeng on 2008-07-21 15:02:27 as *** along with 1 person allmensch
  • Molecular dynamics simulation of thermal unfolding of Thermatoga maritima DHFR.
    Physical chemistry chemical physics : PCCP, Vol. 9, No. 6. (14 February 2007), pp. 711-718.
    by J Pang, RK Allemann
    posted to high-t-md by choonpeng on 2008-07-21 14:53:46 as ***
  • Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 25. (9 December 1997), pp. 13409-13413.
    by CJ Bond, KB Wong, J Clarke, AR Fersht, V Daggett
    posted to protein-folding high-t-md folding-nucleus by choonpeng on 2008-07-19 08:27:28 as ***
  • Effects of Familial Alzheimer's Disease Mutations on the Folding Nucleation of the Amyloid beta-Protein.
    Journal of molecular biology (4 June 2008)
    by Mary Griffin G Krone, Andrij Baumketner, Summer L L Bernstein, Thomas Wyttenbach, Noel D D Lazo, David B B Teplow, Michael T T Bowers, Joan-Emma E Shea
    posted to self-assembly salt-bridge amyloid by choonpeng on 2008-07-16 02:23:50 as *** along with 1 person furuyoshi
  • Disrupting integrin transmembrane domain heterodimerization increases ligand binding affinity, not valency or clustering.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 10. (8 March 2005), pp. 3679-3684.
    by BH Luo, CV Carman, J Takagi, TA Springer
    posted to mechanotransduction by choonpeng on 2008-07-11 08:06:47 as read
  • Molecular mechanics of filamin's rod domain.
    Biophysical journal, Vol. 94, No. 3. (1 February 2008), pp. 1075-1083.
    by KS Kolahi, MR Mofrad
    posted to mechanotransduction force-probe-md by choonpeng on 2008-07-10 12:47:19 as ****
  • Desmosomes: new perspectives on a classic.
    The Journal of investigative dermatology, Vol. 127, No. 11. (November 2007), pp. 2499-2515.
    by KJ Green, CL Simpson
    posted to cell-adhesion by choonpeng on 2008-07-07 08:43:51 as ***
  • Mechanistic Insights from a Refined Three-dimensional Model of Integrin alphaIIbbeta3
    J. Biol. Chem., Vol. 279, No. 23. (4 June 2004), pp. 24624-24630.
    by Marta Filizola, Sergio A Hassan, Andrea Artoni, Barry S Coller, Harel Weinstein
    posted to mechanotransduction by choonpeng on 2008-07-06 14:41:45 as **
  • Predicting the Folding Pathway of Engrailed Homeodomain with a Probabilistic Roadmap Enhanced Reaction-Path Algorithm
    Biophys. J., Vol. 94, No. 5. (1 March 2008), pp. 1622-1629.
    by Da-Wei Li, Haijun Yang, Li Han, Shuanghong Huo
    posted to protein-folding by choonpeng on 2008-07-06 06:31:37 as ***
  • Superelasticity, energy dissipation and strain hardening of vimentin coiled-coil intermediate filaments: atomistic and continuum studies
    Journal of Materials Science, Vol. 42, No. 21. (November 2007), pp. 8771-8787.
    by Theodor Ackbarow, Markus Buehler
    posted to force-probe-md by choonpeng on 2008-07-01 01:52:04 as ***
  • Tubulin: from atomistic structure to supramolecular mechanical properties
    Journal of Materials Science, Vol. 42, No. 21. (November 2007), pp. 8864-8872.
    by Marco Deriu, Søren Enemark, Monica Soncini, Franco Montevecchi, Alberto Redaelli
    posted to multi-scale cytoskeletal-dynamics coarse-grained by choonpeng on 2008-07-01 01:42:01 as ****
  • Role of multiple bonds between the single cell adhesion molecules, nectin and cadherin, revealed by high sensitive force measurements.
    Journal of molecular biology, Vol. 367, No. 4. (6 April 2007), pp. 996-1006.
    by Y Tsukasaki, K Kitamura, K Shimizu, AH Iwane, Y Takai, T Yanagida
    posted to single-molecule-techniques cell-adhesion by choonpeng on 2008-06-30 04:04:59 as ***
  • Desmosome structure, composition and function
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1778, No. 3. (March 2008), pp. 572-587.
    by David Garrod, Martyn Chidgey
    posted to review cell-adhesion by choonpeng on 2008-06-29 03:57:42 as ****
  • Structural studies on desmosomes.
    Biochemical Society transactions, Vol. 36, No. Pt 2. (April 2008), pp. 181-187.
    by A Al-Amoudi, AS Frangakis
    posted to cell-adhesion by choonpeng on 2008-06-29 03:55:14 as ****
  • The molecular architecture of cadherins in native epidermal desmosomes
    Nature, Vol. 450, No. 7171., pp. 832-837.
    by Ashraf Al-Amoudi, Daniel C Díez, Matthew J Betts, Achilleas S Frangakis
    posted to experimental cell-adhesion by choonpeng on 2008-06-29 03:52:15 as ***
  • Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13111-13116.
    by JW Chu, GA Voth
    posted to coarse-grained by choonpeng on 2008-06-29 03:31:28 as *** along with 1 person BragilMassoud
  • On the Octagonal Structure of the Nuclear Pore Complex: Insights from Coarse-Grained Models.
    Biophysical journal (16 May 2008)
    by Christopher B B Wolf, Mohammad R K R Mofrad
    posted to coarse-grained by choonpeng on 2008-06-27 09:13:07 as ***
  • Molecular Dynamics Study of Talin-Vinculin Binding.
    Biophysical journal (11 April 2008)
    by Seung E E Lee, Surasak Chunsrivirot, Roger D D Kamm, Mohammad R K R Mofrad
    posted to force-probe-md cell-adhesion by choonpeng on 2008-06-27 09:12:00 as ***
  • Single pilus motor forces exceed 100 pN.
    Proc Natl Acad Sci U S A, Vol. 99, No. 25. (10 December 2002), pp. 16012-16017.
    by B Maier, L Potter, M So, CD Long, HS Seifert, MP Sheetz
    posted to single-molecule-techniques by choonpeng on 2008-06-26 03:34:42 as ***
  • Protein unfolding by a AAA+ protease is dependent on ATP-hydrolysis rates and substrate energy landscapes
    Nature Structural & Molecular Biology, Vol. 15, No. 2. (27 January 2008), pp. 139-145.
    by Andreas Martin, Tania A Baker, Robert T Sauer
    posted to protein-translocation by choonpeng on 2008-06-26 03:29:24 as read
  • Hyper-adhesion in desmosomes: its regulation in wound healing and possible relationship to cadherin crystal structure
    J Cell Sci, Vol. 118, No. 24. (15 December 2005), pp. 5743-5754.
    by David R Garrod, Mohamed Y Berika, William F Bardsley, David Holmes, Lydia Tabernero
    posted to cell-adhesion by choonpeng on 2008-06-25 13:20:15 as read
  • Crosstalk between different adhesion molecules
    Current Opinion in Cell Biology, Vol. 18, No. 5. (October 2006), pp. 572-578.
    by Xuejun Chen, Barry M Gumbiner
    posted to review cell-adhesion by choonpeng on 2008-06-25 12:22:33 as *** along with 1 person catcremona
  • Folding kinetics and thermodynamics of Pseudomonas syringae effector protein AvrPto provide insight into translocation via the type III secretion system
    Protein Sci, Vol. 17, No. 7. (1 July 2008), pp. 1109-1119.
    by Jennifer E Dawson, Linda K Nicholson
    posted to ttss by choonpeng on 2008-06-25 10:32:35 as ***
  • Microscopic Reversibility of Protein Folding in Molecular Dynamics Simulations of the Engrailed Homeodomain.
    Biochemistry, Vol. 47, No. 27. (8 July 2008), pp. 7079-7089.
    by Michelle E Mccully, David A Beck, Valerie Daggett
    posted to high-t-md by choonpeng on 2008-06-23 08:03:22 as ***
  • Protein Folding and Unfolding at Atomic Resolution
    Cell, Vol. 108, No. 4. (22 February 2002), pp. 573-582.
    by Alan R Fersht, Valerie Daggett
    posted to protein-folding by choonpeng on 2008-06-23 07:54:08 as *****
  • Organization of multiprotein complexes at cell–cell junctions
    Histochemistry and Cell Biology, Vol. 130, No. 1. (31 July 2008), pp. 1-20.
    by Klaus Ebnet
    posted to review cell-adhesion by choonpeng on 2008-06-23 03:32:44 as ***
  • Beyond structure: mechanism and dynamics of intercellular adhesion.
    Biochemical Society transactions, Vol. 36, No. Pt 2. (April 2008), pp. 213-220.
    by D Leckband
    posted to review cell-adhesion by choonpeng on 2008-06-23 03:27:59 as ***
  • New insights into FAK signaling and localization based on detection of a FAT domain folding intermediate.
    Structure (London, England : 1993), Vol. 12, No. 12. (December 2004), pp. 2161-2171.
    by RD Dixon, Y Chen, F Ding, SD Khare, KC Prutzman, MD Schaller, SL Campbell, NV Dokholyan
    posted to protein-folding folding-intermediate by choonpeng on 2008-06-20 10:21:17 as ***
  • Indirect Role of Ca2+ in the Assembly of Extracelluar Matrix Proteins
    Biophys. J. (21 March 2008), biophysj.108.129106.
    by Jiankuai Diao, Emad Tajkhorshid
    posted to force-probe-md by choonpeng on 2008-06-20 04:06:40 as **** along with 1 person paulschlesinger
  • Modeling the influence of the E-cadherin-beta-catenin pathway in cancer cell invasion: a multiscale approach.
    Biophysical journal, Vol. 95, No. 1. (July 2008), pp. 155-165.
    by I Ramis-Conde, D Drasdo, AR Anderson, MA Chaplain
    posted to multi-scale cell-adhesion by choonpeng on 2008-06-20 04:06:00 as ***
  • Direct observation of catch bonds involving cell-adhesion molecules
    Nature, Vol. 423, No. 6936. (May 2003), pp. 190-193.
    by Bryan T Marshall, Mian Long, James W Piper, Tadayuki Yago, Rodger P Mcever, Cheng Zhu
    posted to cell-adhesion by choonpeng on 2008-06-17 12:05:06 as ***
  • Anisotropy of fluctuation dynamics of proteins with an elastic network model.
    Biophys J, Vol. 80, No. 1. (January 2001), pp. 505-515.
    by AR Atilgan, SR Durell, RL Jernigan, MC Demirel, O Keskin, I Bahar
    posted to elastic_network_model by choonpeng on 2008-06-16 07:41:35 as *** along with 5 people apaydin lna aqeel simone insectopalo
  • Solution Structure and Sugar-Binding Mechanism of Mouse Latrophilin-1 RBL: a 7TM Receptor-Attached Lectin-Like Domain
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 944-953.
    by Ioannis Vakonakis, Tobias Langenhan, Simone Prömel, Andreas Russ, Iain D Campbell
    posted to protein-interaction by choonpeng on 2008-06-11 10:02:32 as ***
  • Importin-[beta]: Structural and Dynamic Determinants of a Molecular Spring
    Structure, Vol. 16, No. 6. (11 June 2008), pp. 906-915.
    by Ulrich Zachariae, Helmut Grubmüller
    posted to force-probe-md by choonpeng on 2008-06-11 09:57:33 as read along with 1 person zwang
  • Amyloid Fibrils of the HET-s(218-289) Prion Form a beta Solenoid with a Triangular Hydrophobic Core
    Science, Vol. 319, No. 5869. (14 March 2008), pp. 1523-1526.
    by Christian Wasmer, Adam Lange, Helene Van Melckebeke, Ansgar B Siemer, Roland Riek, Beat H Meier
    posted to protein-stability by choonpeng on 2008-06-08 05:57:23 as read along with 1 person rph
  • Unraveling proteins: a molecular mechanics study.
    Biophysical journal, Vol. 76, No. 5. (May 1999), pp. 2760-2768.
    by R Rohs, C Etchebest, R Lavery
    posted to protein-mechanics by choonpeng on 2008-06-08 05:41:49 as read
  • Double hexameric ring assembly of the type III protein translocase ATPase HrcN
    Molecular Microbiology, Vol. 61, No. 1. (July 2006), pp. 119-125.
    by Muller, A Shirley, Pozidis, Charalambos, Stone, Remington, Meesters, Christian, Chami, Mohamed, Engel, Andreas, Economou, Anastassios, Stahlberg, Henning
    posted to ttss by choonpeng on 2008-06-08 05:27:54 as read along with 1 person martainn
  • The Jpred 3 secondary structure prediction server
    Nucl. Acids Res. (7 May 2008), gkn238.
    by Christian Cole, Jonathan D Barber, Geoffrey J Barton
    posted to web-server protein-organization by choonpeng on 2008-06-06 10:15:37 as **
  • Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide.
    Biochemistry, Vol. 47, No. 5. (5 February 2008), pp. 1393-1402.
    by Y Maruyama, M Momma, B Mikami, W Hashimoto, K Murata
    posted to flagellin by choonpeng on 2008-06-05 11:24:47 as read along with 1 person martainn
  • Molecular dynamics with coupling to an external bath
    The Journal of Chemical Physics, Vol. 81, No. 8. (1984), pp. 3684-3690.
    by HJC Berendsen, JPM Postma, WF van Gunsteren, A Dinola, JR Haak
    posted to methodology by choonpeng on 2008-06-04 13:09:41 as ** along with 5 people lillekatt allmensch jwagoner luisand tji
  • The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding.
    Journal of molecular biology, Vol. 254, No. 2. (24 November 1995), pp. 260-288.
    by LS Itzhaki, DE Otzen, AR Fersht
    posted to protein-folding folding-nucleus experimental by choonpeng on 2008-06-04 08:37:39 as **
  • Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution.
    Science, Vol. 282, No. 5389. (23 October 1998), pp. 740-744.
    by Y Duan, PA Kollman
    posted to protein-folding by choonpeng on 2008-06-04 06:09:28 as ** along with 3 people RamuAnandakrishnan j3xucite allmensch
  • All-atom ab initio folding of a diverse set of proteins.
    Structure, Vol. 15, No. 1. (January 2007), pp. 53-63.
    by JS Yang, WW Chen, J Skolnick, EI Shakhnovich
    posted to protein-folding monte-carlo by choonpeng on 2008-06-04 04:17:48 as *** along with 1 person wouterboomsma
  • Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece.
    The Journal of chemical physics, Vol. 124, No. 16. (28 April 2006)
    by G Jayachandran, V Vishal, VS Pande
    posted to protein-folding by choonpeng on 2008-06-03 12:38:30 as ***
  • Investigating protein dynamics in collective coordinate space.
    Curr Opin Struct Biol, Vol. 9, No. 2. (April 1999), pp. 164-169.
    by A Kitao, N Go
    posted to pca by choonpeng on 2008-06-03 05:38:15 as read along with 4 people and 1 group sobolevnrm barry ttjoseph ffranca baker-group
  • Steered molecular dynamics investigations of protein function
    Journal of Molecular Graphics and Modelling, Vol. 19, No. 1. (February 2001), pp. 13-25.
    by Barry Isralewitz, Jerome Baudry, Justin Gullingsrud, Dorina Kosztin, Klaus Schulten
    posted to force-probe-md by choonpeng on 2008-06-03 02:53:49 as *** along with 1 person LamBras
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