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caseybrowns sequencing [26 articles]

Neue Publikationen in caseybrowns Bibliothek eingetragen unter dem Bezeichner: sequencing. You can also see everyone's sequencing.
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
    posted to transcription sequencing rna_seq 454 by caseybrown on 2008-07-08 16:30:20 as ** along with 10 people gracio jyuh jfr dchughes stsaft echinotrix giovanni ghattem idonaldson ohara
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to transcription sequencing rna_seq method by caseybrown on 2008-07-08 16:03:24 as ** along with 11 people and 1 group Ema jyuh vmarshal lusk fpattyn ela503 semrich balicea vega giovanni stajich Berkeley Mycology
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to yeast transcription sequencing rna_seq by caseybrown on 2008-07-08 16:00:08 as ** along with 5 people and 1 group myourshaw jyuh GeeSharpMinor jonathanjacobs djkt Molecular Biology
  • Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
    Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536.
    by Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, Harvey A Millar, Joseph R Ecker
    posted to transcription sequencing rna_seq arabidopsis by caseybrown on 2008-07-08 15:59:17 as ** along with 3 people jmjimenez GeeSharpMinor megraw
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nature methods (30 May 2008)
    by Ali Mortazavi, Brian A A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold
    posted to transcription solid sequencing rna_seq by caseybrown on 2008-07-08 15:11:54 as read along with 4 people myourshaw GeeSharpMinor megraw vplagnol
  • Stem cell transcriptome profiling via massive-scale mRNA sequencing.
    Nature methods (30 May 2008)
    by Nicole Cloonan, Alistair R R R Forrest, Gabriel Kolle, Brooke B A B Gardiner, Geoffrey J J Faulkner, Mellissa K K Brown, Darrin F F Taylor, Anita L L Steptoe, Shivangi Wani, Graeme Bethel, Alan J J Robertson, Andrew C C Perkins, Stephen J J Bruce, Clarence C C Lee, Swati S S Ranade, Heather E E Peckham, Jonathan M M Manning, Kevin J J McKernan, Sean M M Grimmond
    posted to transcription stem_cell sequencing rna_seq by caseybrown on 2008-07-08 15:11:14 as ** along with 4 people inesdesantiago myourshaw GeeSharpMinor megraw
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to sequencing es_cell chip by caseybrown on 2008-07-03 23:21:06 as ** along with 3 people inesdesantiago kengg jjray
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
    posted to transcription sequencing rna_seq method by caseybrown on 2008-07-03 23:17:24 as read along with 7 people Ema kjglennie balicea GeeSharpMinor dh0000 reyez oelemento
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
    posted to sequencing cancer by caseybrown on 2008-06-12 22:04:07 as ** along with 4 people and 3 groups jasonflannick jyuh dchughes ghattem Bioinformatics G4ID Genetics-of-Gambling
  • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 722-729.
    by Peter J Campbell, Philip J Stephens, Erin D Pleasance, Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W Teague, Andrew Menzies, Ian Goodhead, Daniel J Turner, Christopher M Clee, Michael A Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E Hurles, Paul AW Edwards, Graham R Bignell, Michael R Stratton, Andrew P Futreal
    posted to sequencing cancer by caseybrown on 2008-06-12 21:59:16 as read along with 1 person chrisamiller
  • Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome.
    Science (27 September 2007)
    by Jan O O Korbel, Alexander Eckehart E Urban, Jason P P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik F Simons, Philip M M Kim, Dean Palejev, Nicholas J J Carriero, Lei Du, Bruce E E Taillon, Zhoutao Chen, Andrea Tanzer, A C Eugenia C Saunders, Jianxiang Chi, Fengtang Yang, Nigel P P Carter, Matthew E E Hurles, Sherman M M Weissman, Timothy T T Harkins, Mark B B Gerstein, Michael Egholm, Michael Snyder
    posted to sequencing by caseybrown on 2008-06-12 21:51:27 as read along with 9 people and 1 group Neeperando jfr dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 EisenLab
  • DNA sequencing: bench to bedside and beyond.
    Nucleic Acids Res (12 September 2007)
    by Clyde A A Hutchison
    posted to sequencing by caseybrown on 2008-06-12 21:41:17 as ** along with 5 people jyuh dullhunk niallhaslam hpaces rschulz
  • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    Genome Res. (19 February 2008), gr.7179508.
    by Ryan D Morin, Michael D O'Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen Mcdonald, Thomas Zeng, Martin Hirst, Connie J Eaves, Marco A Marra
    posted to sequencing rna_seq mirna by caseybrown on 2008-06-12 21:08:22 as ** along with 3 people and 1 group jfr stajich maralena Berkeley Mycology
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to sequencing by caseybrown on 2008-06-12 21:04:04 as read along with 11 people and 1 group dchughes serdarbozdag hpaces balicea tharris reyez GustavoLacerda kintoki lp2 stajich tmmurali Berkeley Mycology
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to sequencing derm by caseybrown on 2008-06-06 19:02:04 as ** along with 3 people and 1 group sconlan djkt aprasad iSEEM
  • Mapping translocation breakpoints by next-generation sequencing.
    Genome Res (7 March 2008)
    by Wei Chen, Vera Kalscheu, Andreas Tzschach, Corinna Menzel, Reinhard Ullmann, Marcel Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora Lopez L Pajares, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta Glaeser G Glaeser, Martin Vingron, Hans Hilger H Ropers
    posted to sequencing by caseybrown on 2008-05-27 00:04:18 as read along with 1 person APRegier
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
    posted to worm solid sequencing nucleosome by caseybrown on 2008-05-16 00:00:17 as read along with 5 people and 1 group vega aalibes Stew dpollard maximilianh RockmanLab
  • PASH 2.0: SCALEABLE SEQUENCE ANCHORING FOR NEXT-GENERATION SEQUENCING TECHNOLOGIES
    Pacific Symposium on Biocomputing, Vol. 13 (2008), pp. 102-113.
    by C Coarfa, A Milosavljevic
    posted to sequencing method by caseybrown on 2008-05-02 14:47:50 as **
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
    posted to sequencing method by caseybrown on 2008-05-02 14:43:29 as ** along with 5 people heliopais kmdaily farhat ghattem mdimon
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to sequencing method by caseybrown on 2008-05-02 14:41:53 as ** along with 6 people urgi jyuh ghattem GustavoLacerda niallhaslam mdimon
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to sequencing polymorphism method by caseybrown on 2008-05-02 14:22:20 as read along with 5 people dbensasson sharpton GustavoLacerda Neeperando bpb
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
    posted to polymorphism sequencing by caseybrown on 2008-04-17 17:27:21 as read along with 11 people and 2 groups jyuh Neeperando dbensasson Huub_odc bpb orzenil dullhunk djkt ramensky psique melting microbiology_nijmegen parkinson's disease references
  • Single-Molecule DNA Sequencing of a Viral Genome
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 106-109.
    by Timothy D Harris, Phillip R Buzby, Hazen Babcock, Eric Beer, Jayson Bowers, Ido Braslavsky, Marie Causey, Jennifer Colonell, James Dimeo, William J Efcavitch, Eldar Giladi, Jaime Gill, John Healy, Mirna Jarosz, Dan Lapen, Keith Moulton, Stephen R Quake, Kathleen Steinmann, Edward Thayer, Anastasia Tyurina, Rebecca Ward, Howard Weiss, Zheng Xie
    posted to method sequencing by caseybrown on 2008-04-04 16:36:25 as read along with 14 people and 3 groups jyuh vmarshal ilyaf austin operon dchughes samjlord neils zwang cabbagezs kinestetika benlin kjglennie melting moernerlab Microbial-Ecology microbiology_nijmegen
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to chip cisreg method sequencing by caseybrown on 2008-02-02 22:56:23 as read along with 17 people and 5 groups aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to method sequencing by caseybrown on 2008-02-02 22:45:06 as read along with 5 people tharris iris42 azazello GustavoLacerda dandaman
  • Multiplex amplification of large sets of human exons
    Nature Methods, Vol. 4, No. 11. (14 October 2007), pp. 931-936.
    by Gregory J Porreca, Kun Zhang, Jin B Li, Bin Xie, Derek Austin, Sara L Vassallo, Emily M Leproust, Bill J Peck, Christopher J Emig, Fredrik Dahl, Yuan Gao, George M Church, Jay Shendure
    posted to method sequencing by caseybrown on 2008-02-02 22:22:10 as read along with 2 people jyuh balicea
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