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caseybrowns cisreg [47 articles]

Neue Publikationen in caseybrowns Bibliothek eingetragen unter dem Bezeichner: cisreg. You can also see everyone's cisreg.
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to transcription molevol melanogaster cisreg by caseybrown on 2008-06-30 01:40:26 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol stajich djkt cis-regulatory-evolution Berkeley Mycology
  • Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth
    Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909.
    by Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar
    posted to network cisreg by caseybrown on 2008-05-15 23:42:10 as ** along with 3 people oelemento AlexanderPico waszak
  • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1512-1516.
    by Julia Zeitlinger, Alexander Stark, Manolis Kellis, Joung-Woo Hong, Sergei Nechaev, Karen Adelman, Michael Levine, Richard A Young
    posted to transcription melanogaster cisreg by caseybrown on 2008-05-05 18:22:58 as read along with 4 people mikaelhuss margaritis Stew rschulz
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to transcription melanogaster cisreg by caseybrown on 2008-05-05 18:21:45 as read along with 4 people and 1 group mikaelhuss skoch3 margaritis rschulz Koch_Lab
  • The Role of Regulatory Genes During Maize Domestication: Evidence From Nucleotide Polymorphism and Gene Expression
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2133-2143.
    by Qiong Zhao, Anne-Celine Thuillet, Nathan K Uhlmann, Allison Weber, Antoni J Rafalski, Stephen M Allen, Scott Tingey, John Doebley
    posted to polymorphism maize cisreg by caseybrown on 2008-04-26 14:27:05 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to cisreg molevol network by caseybrown on 2008-04-16 20:45:23 as read along with 17 people and 4 groups aheilbut chad_davis michaelbarton austin AbnerCYH hryk margaritis cactus dbikard Garamonfok biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Gene–Environment Interaction in Yeast Gene Expression
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e83.
    by Erin N Smith, Leonid Kruglyak
    posted to cisreg eqtl yeast by caseybrown on 2008-04-15 16:17:59 as read along with 1 person dbensasson
  • Serum response factor binding sites differ in three human cell types
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 136-144.
    by Sara J Cooper, Nathan D Trinklein, Loan Nguyen, Richard M Myers
    posted to chip cisreg promoter by caseybrown on 2008-04-12 20:38:15 as read along with 1 person and 1 group indigoviolet EisenLab
  • High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes.
    Genome Res (22 January 2008)
    by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother
    posted to chip cisreg method by caseybrown on 2008-04-01 22:33:51 as ** along with 2 people xingxu maximilianh
  • A survey of allelic imbalance in F1 mice
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 555-563.
    by Catarina D Campbell, Andrew Kirby, James Nemesh, Mark J Daly, Joel N Hirschhorn
    posted to cisreg mouse transcription by caseybrown on 2008-04-01 22:31:47 as read along with 1 person mimulus_99
  • Selection to minimise noise in living systems and its implications for the evolution of gene expression
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Ben Lehner
    posted to cisreg molevol transcription by caseybrown on 2008-03-29 13:39:45 as ** along with 8 people austin jjray grahamc zwang bootsy biomcgary wilbur michaelbarton
  • Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 421-429.
    by Christopher C Park, Sangtae Ahn, Joshua S Bloom, Andy Lin, Richard T Wang, Tongtong Wu, Aswin Sekar, Arshad H Khan, Christine J Farr, Aldons J Lusis, Richard M Leahy, Kenneth Lange, Desmond J Smith
    posted to cisreg eqtl mouse transcription by caseybrown on 2008-03-27 15:20:09 as read
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to cisreg genetic_interaction molevol network by caseybrown on 2008-03-27 15:09:35 as read along with 4 people and 1 group zwang emptyhb smgomez ptrobajo GomezLab
  • Evolution of gene expression in the Drosophila melanogaster subgroup.
    Nat Genet, Vol. 33, No. 2. (February 2003), pp. 138-144.
    by SA Rifkin, J Kim, KP White
    posted to cisreg expression_array melanogaster simulans by caseybrown on 2008-03-19 14:25:48 as read along with 4 people and 1 group adepace eukfn emarker emptyhb EisenLab
  • Harnessing naturally randomized transcription to infer regulatory relationships among genes
    Genome Biology, Vol. 8 (11 October 2007), R219.
    by Lin S Chen, Frank Emmert-Streib, John D Storey
    posted to cisreg eqtl expression_array network by caseybrown on 2008-03-18 22:10:59 as read
  • Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 243-253.
    by Norbert Hubner, Caroline A Wallace, Heike Zimdahl, Enrico Petretto, Herbert Schulz, Fiona Maciver, Michael Mueller, Oliver Hummel, Jan Monti, Vaclav Zidek, Alena Musilova, Vladimir Kren, Helen Causton, Laurence Game, Gabriele Born, Sabine Schmidt, Anita Müller, Stuart A Cook, Theodore W Kurtz, John Whittaker, Michal Pravenec, Timothy J Aitman
    posted to cisreg eqtl metabolism by caseybrown on 2008-03-18 16:15:54 as ** along with 6 people thomaskelder jo_davies snuppepuppan kentsis samal neveaire
  • Genetic regulation of gene expression during shoot development in Arabidopsis.
    Genetics, Vol. 172, No. 2. (February 2006), pp. 1155-1164.
    by R DeCook, S Lall, D Nettleton, SH Howell
    posted to arabidopsis cisreg eqtl by caseybrown on 2008-03-18 16:13:19 as ** along with 1 person fisherp
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to cisreg eqtl network by caseybrown on 2008-03-18 16:09:40 as read along with 2 people and 1 group raiyar natstreet steinmetzlab
  • Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
    Genome Res. (17 March 2008), gr.074609.107.
    by Vitalina M Komashko, Luis G Acevedo, Sharon L Squazzo, Sushma S Iyengar, Alina Rabinovich, Henriette O'Geen, Roland Green, Peggy J Farnham
    posted to chip cisreg expression_array by caseybrown on 2008-03-17 21:54:43 as **
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
    posted to cisreg eqtl by caseybrown on 2008-03-17 18:52:43 as read along with 5 people and 1 group jyuh dpollard raiyar xingxu smgomez EisenLab
  • Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1441-1450.
    by Marilyn A West, Kyunga Kim, Daniel J Kliebenstein, Hans van Leeuwen, Richard W Michelmore, RW Doerge, Dina A St. Clair
    posted to arabidopsis cisreg eqtl by caseybrown on 2008-03-17 18:47:32 as read along with 3 people and 1 group dpollard natstreet jmjimenez EisenLab
  • Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
    PNAS, Vol. 104, No. 5. (30 January 2007), pp. 1708-1713.
    by Joost J Keurentjes, Jingyuan Fu, Inez R Terpstra, Juan M Garcia, Guido van den Ackerveken, Basten L Snoek, Anton J Peeters, Dick Vreugdenhil, Maarten Koornneef, Ritsert C Jansen
    posted to arabidopsis cisreg eqtl by caseybrown on 2008-03-17 18:46:27 as read along with 2 people natstreet jmjimenez
  • Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits
    Human Molecular Genetics, Vol. 15, No. 3. (1 February 2006), pp. 481-492.
    by Hongqiang Li, Hao Chen, Kenneth F Manly, Elissa J Chesler, Lu Lu, Jintao Wang, Mi Zhou, Robert W Williams, Yan Cui
    posted to cisreg eqtl by caseybrown on 2008-03-17 14:49:18 as ** along with 1 person hms
  • Combined Expression Trait Correlations and Expression Quantitative Trait Locus Mapping
    PLoS Genetics, Vol. 2, No. 1. (20 January 2006), e6.
    by H Lan, M Chen, JB Flowers, BS Yandell, DS Stapleton, CM Mata, ET Mui, MT Flowers, KL Schueler, KF Manly, RW Williams, C Kendziorski, AD Attie
    posted to cisreg diabetes eqtl liver mouse by caseybrown on 2008-03-17 14:39:24 as **
  • Genetic Networks of Liver Metabolism Revealed by Integration of Metabolic and Transcriptional Profiling
    PLoS Genetics, Vol. 4, No. 3. (14 March 2008), e1000034.
    by Christine T Ferrara, Ping Wang, Elias C Neto, Robert D Stevens, James R Bain, Brett R Wenner, Olga R Ilkayeva, Mark P Keller, Daniel A Blasiole, Christina Kendziorski, Brian S Yandell, Christopher B Newgard, Alan D Attie
    posted to cisreg diabetes eqtl liver metabolism mouse by caseybrown on 2008-03-17 14:23:19 as read along with 1 person olbzn
  • A genetic signature of interspecies variations in gene expression
    Nature Genetics, Vol. 38, No. 7. (18 June 2006), pp. 830-834.
    by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai
    posted to cisreg transcription by caseybrown on 2008-03-16 18:14:56 as read along with 4 people and 2 groups adepace nickluscombe aswin cjeans EisenLab EBI-regulation
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to chip chromatin cisreg promoter by caseybrown on 2008-03-16 14:58:30 as read along with 7 people and 2 groups inesdesantiago kengg djkt mgaldzic olympos skoch3 epigenetics CHIP Plantandetc
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to cisreg by caseybrown on 2008-03-13 20:28:42 as read along with 8 people and 2 groups Jporci balicea kengg zwang biomcgary cisevol renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Genome wide prediction of HNF4alpha functional binding sites by the use of local and global sequence context
    Genome Biology, Vol. 9 (21 February 2008), R36.
    by Alexander E Kel, Monika Niehof, Volker Matys, Rudiger Zemlin, Jurgen Borlak
    posted to cisreg liver by caseybrown on 2008-03-12 18:46:16 as ** along with 2 people heliopais ptrobajo
  • A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression
    Nature, Vol. 438, No. 7065., pp. 220-223.
    by Scott A Rifkin, David Houle, Junhyong Kim, Kevin P White
    posted to cisreg expression_array melanogaster molevol by caseybrown on 2008-03-11 00:39:44 as read along with 8 people and 1 group emptyhb dayjm indigoviolet dpollard adepace johncumbers djkt mimulus_99 EisenLab
  • Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans
    PLoS Genetics, Vol. 2, No. 12. (1 December 2006), e222.
    by Yang Li, Olga A Álvarez, Evert W Gutteling, Marcel Tijsterman, Jingyuan Fu, Joost A Riksen, Esther Hazendonk, Pjotr Prins, Ronald H Plasterk, Ritsert C Jansen, Rainer Breitling, Jan E Kammenga
    posted to cisreg eqtl expression_array genetics worm by caseybrown on 2008-02-19 16:39:04 as read
  • Regulatory changes underlying expression differences within and between Drosophila species
    Nature Genetics (2008)
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cisreg melanogaster polymorphism simulans transcription by caseybrown on 2008-02-18 16:06:34 as read
  • A gene atlas of the mouse and human protein-encoding transcriptomes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067.
    by AI Su, T Wiltshire, S Batalov, H Lapp, KA Ching, D Block, J Zhang, R Soden, M Hayakawa, G Kreiman, MP Cooke, JR Walker, JB Hogenesch
    posted to cisreg database transcription by caseybrown on 2008-02-13 14:59:21 as ** along with 11 people and 2 groups gjuggler dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj maralena EBI-regulation GeschwindLab
  • Genome-wide promoter extraction and analysis in human, mouse, and rat.
    Genome Biol, Vol. 6, No. 8. (2005)
    by Z Xuan, F Zhao, J Wang, G Chen, MQ Zhang
    posted to cisreg promoter by caseybrown on 2008-02-13 14:57:14 as ** along with 2 people nur77 uz_labu_laimi
  • Adaptive Gene Expression Divergence Inferred from Population Genomics
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e187.
    by Alisha K Holloway, Mara K Lawniczak, Jason G Mezey, David J Begun, Corbin D Jones
    posted to cisreg molevol transcription by caseybrown on 2008-02-13 14:53:45 as read along with 5 people brant Garamonfok xingxu sb_journal_club emptyhb
  • DNA motifs in human and mouse proximal promoters predict tissue-specific expression.
    Proc Natl Acad Sci U S A (10 April 2006)
    by Andrew D D Smith, Pavel Sumazin, Zhenyu Xuan, Michael Q Q Zhang
    posted to cisreg transcription by caseybrown on 2008-02-13 14:44:02 as ** along with 2 people jfr postrational
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to chip cisreg molevol transcription by caseybrown on 2008-02-13 14:31:31 as read along with 9 people and 4 groups dpollard gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn yevishere EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm
    PLoS Biology, Vol. 6, No. 2. (1 February 2008), e27.
    by Xiao-Yong Li, Stewart Macarthur, Richard Bourgon, David Nix, Daniel A Pollard, Venky N Iyer, Aaron Hechmer, Lisa Simirenko, Mark Stapleton, Cris L Hendriks, Hou C Chu, Nobuo Ogawa, William Inwood, Victor Sementchenko, Amy Beaton, Richard Weiszmann, Susan E Celniker, David W Knowles, Tom Gingeras, Terence P Speed, Michael B Eisen, Mark D Biggin
    posted to chip cisreg melanogaster by caseybrown on 2008-02-12 14:29:56 as read along with 5 people isimpson brant kengg maximilianh emptyhb
  • Ultraconservation identifies a small subset of extremely constrained developmental enhancers.
    Nature Genetics, Vol. 40, No. 2. (February 2008), pp. 158-160.
    by A Visel, S Prabhakar, JA Akiyama, M Shoukry, KD Lewis, A Holt, Plajzer-Frick, V Afzal, EM Rubin, LA Pennacchio
    posted to cisreg by caseybrown on 2008-02-05 16:58:30 as read
  • Global analysis of patterns of gene expression during Drosophila embryogenesis
    Genome Biology, Vol. 8 (23 July 2007), R145.
    by Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
    posted to cisreg database melanogaster transcription by caseybrown on 2008-02-05 16:42:09 as read along with 1 person and 1 group dpollard EisenLab
  • Genetic Properties Influencing the Evolvability of Gene Expression.
    Science (24 May 2007)
    by Christian R R Landry, Bernardo Lemos, Scott A A Rifkin, W J J Dickinson, Daniel L L Hartl
    posted to cisreg molevol by caseybrown on 2008-02-02 22:58:08 as read along with 10 people and 3 groups klo jjray brant balicea sebastien_vigneau grahamc emarker heliopais cisevol emptyhb EisenLab ParkinsonLab_at_MaRS cis-regulatory-evolution
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to chip cisreg method sequencing by caseybrown on 2008-02-02 22:56:23 as read along with 17 people and 5 groups aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cisreg by caseybrown on 2008-02-02 22:30:06 as read along with 7 people and 2 groups dpollard lp2 nklee maximilianh roys emptyhb barwil EisenLab cis-regulatory-evolution
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to cisreg by caseybrown on 2008-02-02 22:28:27 as read along with 13 people and 2 groups shuzhens PetrovLab operon tmmurali djkt timflutre stajich lp2 cabbagezs nklee hpaces roys gjuggler csb_journal_club_public Berkeley Mycology
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to chip cisreg method by caseybrown on 2008-02-02 22:24:58 as read along with 4 people and 1 group bertelsen kengg nicholso talponer Plantandetc
  • Widespread Monoallelic Expression on Human Autosomes
    Science, Vol. 318, No. 5853. (16 November 2007), pp. 1136-1140.
    by Alexander Gimelbrant, John N Hutchinson, Benjamin R Thompson, Andrew Chess
    posted to cisreg transcription by caseybrown on 2008-02-02 22:09:44 as read along with 7 people vmsr djkt vplagnol giovanni qwermish oelemento stoffreg
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to cisreg transcription by caseybrown on 2008-02-02 22:06:44 as read along with 3 people djkt margaritis cjeans
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