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caseybrowns library [225 articles]

Neue Artikel in caseybrowns library ordered by importance.
  • A Statistical Framework for Expression Quantitative Trait Loci (eQTL) Mapping
    Genetics (29 July 2007), genetics.107.071407.
    by Meng Chen, Christina Kendziorski
    posted to eqtl by caseybrown on 2008-07-22 16:11:25 as ** along with 2 people natstreet jo_davies
  • Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
    Nat Biotech, Vol. 25, No. 1. (February 2007), pp. 117-124.
    by Peng Lu, Christine Vogel, Rong Wang, Xin Yao, Edward M Marcotte
  • Correlation between Protein and mRNA Abundance in Yeast
    Mol. Cell. Biol., Vol. 19, No. 3. (1 March 1999), pp. 1720-1730.
    by Steven P Gygi, Yvan Rochon, Robert B Franza, Ruedi Aebersold
    posted to yeast translation transcription by caseybrown on 2008-07-09 15:20:31 as ** along with 1 person nicoleq
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
  • Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal?
    Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 319-323.
    by S Balaji, Lakshminarayan M Iyer, Madan M Babu, L Aravind
    posted to transcription review network by caseybrown on 2008-07-08 16:17:56 as **
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
  • Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
    Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536.
    by Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, Harvey A Millar, Joseph R Ecker
  • Stem cell transcriptome profiling via massive-scale mRNA sequencing.
    Nature methods (30 May 2008)
    by Nicole Cloonan, Alistair R R R Forrest, Gabriel Kolle, Brooke B A B Gardiner, Geoffrey J J Faulkner, Mellissa K K Brown, Darrin F F Taylor, Anita L L Steptoe, Shivangi Wani, Graeme Bethel, Alan J J Robertson, Andrew C C Perkins, Stephen J J Bruce, Clarence C C Lee, Swati S S Ranade, Heather E E Peckham, Jonathan M M Manning, Kevin J J McKernan, Sean M M Grimmond
  • Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
    Genome Biology, Vol. 9 (20 June 2008), R100.
    by Edward K Lobenhofer, Todd J Auman, Pamela E Blackshear, Gary A Boorman, Pierre R Bushel, Michael L Cunningham, Jennifer M Fostel, Kevin Gerrish, Alexandra N Heinloth, Richard D Irwin, David E Malarkey, Alex B Merrick, Stella O Sieber, Charles J Tucker, Sandra M Ward, Ralph E Wilson, Patrick Hurban, Raymond W Tennant, Richard S Paules
    posted to rat metabolism liver by caseybrown on 2008-07-08 03:46:12 as **
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
  • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129.
    by Tony Y Tsai, Yoon S Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to gwas genotyping eqtl by caseybrown on 2008-06-30 01:42:03 as ** along with 3 people jyuh Stew balicea
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to gwas by caseybrown on 2008-06-27 00:46:03 as ** along with 2 people jyuh djkt
  • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by C Wu, DL Delano, N Mitro, SV Su, J Janes, P McClurg, S Batalov, GL Welch, J Zhang, AP Orth, JR Walker, RJ Glynne, MP Cooke, JS Takahashi, K Shimomura, A Kohsaka, J Bass, E Saez, T Wiltshire, AI Su
    posted to network eqtl by caseybrown on 2008-06-17 21:30:12 as ** along with 1 person thomaskelder
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
  • DNA sequencing: bench to bedside and beyond.
    Nucleic Acids Res (12 September 2007)
    by Clyde A A Hutchison
  • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    Genome Res. (19 February 2008), gr.7179508.
    by Ryan D Morin, Michael D O'Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen Mcdonald, Thomas Zeng, Martin Hirst, Connie J Eaves, Marco A Marra
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
  • Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 956-965.
    by Yudong D He, Hongyue Dai, Eric E Schadt, Guy Cavet, Stephen W Edwards, Sergey B Stepaniants, Sven Duenwald, Robert Kleinhanz, Allan R Jones, Daniel D Shoemaker, Roland B Stoughton
    posted to method expression_array by caseybrown on 2008-06-05 22:28:02 as **
  • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1151-1161.
  • Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments.
    Mol Biol Evol (20 August 2007)
    by Tanya Golubchik, Michael J J Wise, Simon Easteal, Lars S S Jermiin
    posted to molevol indel alignment by caseybrown on 2008-06-01 13:49:11 as ** along with 3 people zwang lilou dandaman
  • Genetic determinants of phenotypic diversity in humans
    Genome Biology, Vol. 9 (24 April 2008), 215.
    by Nazli G Rahim, Olivier Harismendy, Eric J Topol, Kelly A Frazer
    posted to genetics by caseybrown on 2008-05-27 00:11:45 as ** along with 1 person djkt
  • A Polymorphism Within the G6PC2 Gene Is Associated with Fasting Plasma Glucose Levels
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1085-1088.
    by Nabila Bouatia-Naji, Ghislain Rocheleau, Leentje Van Lommel, Katleen Lemaire, Frans Schuit, Christine Cavalcanti-Proenca, Marion Marchand, Anna-Liisa Hartikainen, Ulla Sovio, Franck De Graeve, Johan Rung, Martine Vaxillaire, Jean Tichet, Michel Marre, Beverley Balkau, Jacques Weill, Paul Elliott, Marjo-Riitta Jarvelin, David Meyre, Constantin Polychronakos, Christian Dina, Robert Sladek, Philippe Froguel
    posted to metabolism by caseybrown on 2008-05-27 00:00:08 as ** along with 1 person booker
  • Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 666-680.
    by Susana R Neves, Panayiotis Tsokas, Anamika Sarkar, Elizabeth A Grace, Padmini Rangamani, Stephen M Taubenfeld, Cristina M Alberini, James C Schaff, Robert D Blitzer, Ion I Moraru, Ravi Iyengar
    posted to network by caseybrown on 2008-05-17 01:37:42 as **
  • Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
    Science (24 April 2008), 1157956.
    by Katja Baerenfaller, Jonas Grossmann, Monica A Grobei, Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
  • Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth
    Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909.
    by Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar
    posted to network cisreg by caseybrown on 2008-05-15 23:42:10 as ** along with 3 people oelemento AlexanderPico waszak
  • Exposing the fitness contribution of duplicated genes
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 676-681.
    by Alexander Deluna, Kalin Vetsigian, Noam Shoresh, Matthew Hegreness, Maritrini Colon-Gonzalez, Sharon Chao, Roy Kishony
    posted to yeast molevol gene_duplication by caseybrown on 2008-05-07 00:00:09 as ** along with 1 person djkt
  • PASH 2.0: SCALEABLE SEQUENCE ANCHORING FOR NEXT-GENERATION SEQUENCING TECHNOLOGIES
    Pacific Symposium on Biocomputing, Vol. 13 (2008), pp. 102-113.
    posted to sequencing method by caseybrown on 2008-05-02 14:47:50 as **
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
  • Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 631-637.
    by Albert Tenesa, Susan M Farrington, James G Prendergast, Mary E Porteous, Marion Walker, Naila Haq, Rebecca A Barnetson, Evropi Theodoratou, Roseanne Cetnarskyj, Nicola Cartwright, Colin Semple, Andrew J Clark, Fiona J Reid, Lorna A Smith, Kostas Kavoussanakis, Thibaud Koessler, Paul D Pharoah, Stephan Buch, Clemens Schafmayer, Jurgen Tepel, Stefan Schreiber, Henry Volzke, Carsten O Schmidt, Jochen Hampe, Jenny Chang-Claude, Michael Hoffmeister, Hermann Brenner, Stefan Wilkening, Federico Canzian, Gabriel Capella, Victor Moreno, Ian J Deary, John M Starr, Ian P Tomlinson, Zoe Kemp, Kimberley Howarth, Luis Carvajal-Carmona, Emily Webb, Peter Broderick, Jayaram Vijayakrishnan, Richard S Houlston, Gad Rennert, Dennis Ballinger, Laura Rozek, Stephen B Gruber, Koichi Matsuda, Tomohide Kidokoro, Yusuke Nakamura, Brent W Zanke, Celia M Greenwood, Jagadish Rangrej, Rafal Kustra, Alexandre Montpetit, Thomas J Hudson, Steven Gallinger, Harry Campbell, Malcolm G Dunlop
    posted to gwas colon cancer by caseybrown on 2008-04-28 22:59:58 as **
  • A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 623-630.
    by Ian PM Tomlinson, Emily Webb, Luis Carvajal-Carmona, Peter Broderick, Kimberley Howarth, Alan M Pittman, Sarah Spain, Steven Lubbe, Axel Walther, Kate Sullivan, Emma Jaeger, Sarah Fielding, Andrew Rowan, Jayaram Vijayakrishnan, Enric Domingo, Ian Chandler, Zoe Kemp, Mobshra Qureshi, Susan M Farrington, Albert Tenesa, James GD Prendergast, Rebecca A Barnetson, Steven Penegar, Ella Barclay, Wendy Wood, Lynn Martin, Maggie Gorman, Huw Thomas, Julian Peto, Timothy D Bishop, Richard Gray, Eamonn R Maher, Anneke Lucassen, David Kerr, Evans, Clemens Schafmayer, Stephan Buch, Henry Volzke, Jochen Hampe, Stefan Schreiber, Ulrich John, Thibaud Koessler, Paul Pharoah, Tom van Wezel, Hans Morreau, Juul T Wijnen, John L Hopper, Melissa C Southey, Graham G Giles, Gianluca Severi, Sergi Castellvi-Bel, Clara Ruiz-Ponte, Angel Carracedo, Antoni Castells, Asta Forsti, Kari Hemminki, Pavel Vodicka, Alessio Naccarati, Lara Lipton, Judy WC Ho, KK Cheng, Pak C Sham, J Luk, Jose AG Agundez, Jose M Ladero, de La, Trinidad Caldes, Iina Niittymaki, Sari Tuupanen, Auli Karhu, Lauri Aaltonen, Jean-Baptiste Cazier, Harry Campbell, Malcolm G Dunlop, Richard S Houlston
    posted to gwas colon cancer by caseybrown on 2008-04-28 22:59:32 as ** along with 1 person Petersarkies
  • Determinants of the success of whole-genome association testing
    Genome Res., Vol. 15, No. 11. (1 November 2005), pp. 1463-1467.
    by Andrew G Clark, Eric Boerwinkle, James Hixson, Charles F Sing
    posted to rare_allele polymorphism gwas by caseybrown on 2008-04-28 22:50:46 as **
  • Multiple Rare Nonsynonymous Variants in the Adenomatous Polyposis Coli Gene Predispose to Colorectal Adenomas
    Cancer Res, Vol. 68, No. 2. (15 January 2008), pp. 358-363.
    by Duncan Azzopardi, Anthony R Dallosso, Kristilyn Eliason, Brant C Hendrickson, Natalie Jones, Edward Rawstorne, James Colley, Valentina Moskvina, Cynthia Frye, Julian R Sampson, Richard Wenstrup, Thomas Scholl, Jeremy P Cheadle
    posted to rare_allele polymorphism colon cancer by caseybrown on 2008-04-28 22:45:31 as **
  • Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays
    Hum. Mol. Genet., Vol. 14, No. 22. (15 November 2005), pp. 3435-3447.
    by Alvaro Rada-Iglesias, Ola Wallerman, Christoph Koch, Adam Ameur, Stefan Enroth, Gayle Clelland, Kenneth Wester, Sarah Wilcox, Oliver M Dovey, Peter D Ellis, Vicki L Wraight, Keith James, Rob Andrews, Cordelia Langford, Pawandeep Dhami, Nigel Carter, David Vetrie, Fredrik Ponten, Jan Komorowski, Ian Dunham, Claes Wadelius
    posted to liver chip by caseybrown on 2008-04-26 16:23:24 as **
  • Hepatocyte nuclear factor 4alpha orchestrates expression of cell adhesion proteins during the epithelial transformation of the developing liver.
    Proc Natl Acad Sci U S A, Vol. 103, No. 22. (30 May 2006), pp. 8419-8424.
    by MA Battle, G Konopka, F Parviz, AL Gaggl, C Yang, FM Sladek, SA Duncan
    posted to mouse liver chip by caseybrown on 2008-04-26 16:19:29 as ** along with 1 person duncanswi
  • Statistical Power of Expression Quantitative Trait Loci for Mapping of Complex Trait Loci in Natural Populations
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2201-2216.
    by Paul Schliekelman
    posted to eqtl by caseybrown on 2008-04-26 14:29:50 as ** along with 2 people lp2 jyuh
  • The Role of Regulatory Genes During Maize Domestication: Evidence From Nucleotide Polymorphism and Gene Expression
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2133-2143.
    by Qiong Zhao, Anne-Celine Thuillet, Nathan K Uhlmann, Allison Weber, Antoni J Rafalski, Stephen M Allen, Scott Tingey, John Doebley
    posted to polymorphism maize cisreg by caseybrown on 2008-04-26 14:27:05 as **
  • Detecting Transcriptionally Active Regions Using Genomic Tiling Arrays
    Genome Biology, Vol. 7 (19 July 2006), R59.
    by Gabor Halasz, Marinus F van Batenburg, Joelle Perusse, Sujun Hua, Xiang-Jun Lu, Kevin P White, Harmen J Bussemaker
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
  • The quantitative genetics of transcription.
    Trends Genet, Vol. 21, No. 11. (November 2005), pp. 616-623.
    by G Gibson, B Weir
  • Genotype-Environment Interactions at Quantitative Trait Loci Affecting Inflorescence Development in Arabidopsis thaliana
    Genetics, Vol. 165, No. 1. (1 September 2003), pp. 353-365.
    by Mark C Ungerer, Solveig S Halldorsdottir, Michael D Purugganan, Trudy F Mackay
    posted to arabidopsis gwas gxe by caseybrown on 2008-04-15 19:57:12 as **
  • From the Cover: A method for fine mapping quantitative trait loci in outbred animal stocks
    Proceedings of the National Academy of Sciences, Vol. 97, No. 23. (7 November 2000), pp. 12649-12654.
    by Richard Mott, Christopher J Talbot, Maria G Turri, Allan C Collins, Jonathan Flint
    posted to genetics mouse by caseybrown on 2008-04-15 16:25:41 as **
  • Genetic and Environmental Effects on Complex Traits in Mice
    Genetics, Vol. 174, No. 2. (1 October 2006), pp. 959-984.
    by William Valdar, Leah C Solberg, Dominique Gauguier, William O Cookson, Rawlins, Richard Mott, Jonathan Flint
    posted to gwas mouse by caseybrown on 2008-04-14 22:58:16 as **
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