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carlescorbis library [42 articles]

Neue Artikel in carlescorbis Bibliothek.
  • Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.
    PLoS Comput Biol, Vol. 2, No. 1. (January 2006)
    by T Hou, K Chen, WA McLaughlin, B Lu, W Wang
    posted to no-tag by carlescorbi on 2008-04-04 17:43:42 as ** along with 3 people neils Evangelia biehl
  • The role of backbone motions in ligand binding to the c-Src SH3 domain
    Journal of Molecular Biology, Vol. 313, No. 4. (2 November 2001), pp. 873-887.
    by Chunyu Wang, Norma H Pawley, Linda K Nicholson
    posted to dynamics molecular project1 by carlescorbi on 2008-03-28 11:53:08 as **
  • Bayesian Model Based Clustering Analysis: Application to a Molecular Dynamics Trajectory of the HIV-1 Integrase Catalytic Core
    J. Chem. Inf. Model., Vol. 46, No. 4. (24 July 2006), pp. 1742-1750.
    by Y Li
    posted to analisis dynamics md by carlescorbi on 2008-01-28 12:34:08 as **
  • Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.
    J Mol Biol, Vol. 320, No. 2. (5 July 2002), pp. 369-387.
    by R Guerois, JE Nielsen, L Serrano
    posted to project1 by carlescorbi on 2008-01-23 21:03:35 as **** along with 4 people apaydin aalibes chad_davis hmk
  • The Structure of the Alzheimer Amyloid [beta] 10-35 Peptide Probed through Replica-Exchange Molecular Dynamics Simulations in Explicit Solvent
    Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 275-285.
    by Andrij Baumketner, Joan-Emma Shea
    posted to replica-exchange simulations by carlescorbi on 2008-01-21 18:24:06 as ** along with 1 person cactus
  • Dynamic Coupling between the SH2 and SH3 Domains of c-Src and Hck Underlies Their Inactivation by C-Terminal Tyrosine Phosphorylation
    Cell, Vol. 105, No. 1. (6 April 2001), pp. 115-126.
    by Matthew A Young, Stefania Gonfloni, Giulio Superti-Furga, Benoit Roux, John Kuriyan
    posted to no-tag by carlescorbi on 2007-12-12 09:12:50 as ** along with 1 person choonpeng
  • The application of thermodynamic methods in drug design
    Thermochimica Acta, Vol. 380, No. 2. (14 December 2001), pp. 217-227.
    by Adrian Velazquez-Campoy, Irene Luque, Ernesto Freire
    posted to project1 by carlescorbi on 2007-12-11 10:17:20 as **
  • Structural parameterization of the binding enthalpy of small ligands.
    Proteins, Vol. 49, No. 2. (1 November 2002), pp. 181-190.
    by I Luque, E Freire
    posted to project1 by carlescorbi on 2007-12-11 10:17:14 as ** along with 2 people apaydin lillekatt
  • Structure-based prediction of binding affinities and molecular design of peptide ligands.
    Methods Enzymol, Vol. 295 (1998), pp. 100-127.
    by I Luque, E Freire
    posted to project1 by carlescorbi on 2007-12-11 10:17:09 as **
  • Three-dimensional holographic vector of atomic interaction field for quantitative structure- activity relationship of Aza-bioisosteres of anthrapyrazoles (Aza-APs)
    Journal of Molecular Graphics and Modelling, Vol. In Press, Accepted Manuscript
    by Xu Luo-Nan, Li Zhi-Liang, Zhou Peng
    posted to project1 by carlescorbi on 2007-12-04 12:29:23 as **
  • Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Katrin Kupas, Alfred Ultsch, Gerhard Klebe
    posted to project1 by carlescorbi on 2007-11-28 16:03:11 as ** along with 3 people and 1 group higueruelo nickolay sobolevnrm baker-group
  • Moment invariants as shape recognition technique for comparing protein binding sites
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3139-3146.
    by Ingolf Sommer, Oliver Muller, Francisco S Domingues, Oliver Sander, Joachim Weickert, Thomas Lengauer
    posted to project1 by carlescorbi on 2007-11-28 15:56:10 as ** along with 3 people tjimenez chad_davis nickolay
  • A simple method for displaying the hydropathic character of a protein
    Journal of Molecular Biology, Vol. 157, No. 1. (5 May 1982), pp. 105-132.
    by Jack Kyte, Russell F Doolittle
    posted to hydrophobicity project1 by carlescorbi on 2007-10-31 12:23:59 as ** along with 4 people BioNica leelarcombe twenta rph
  • Comparative modeling without implicit sequence alignments
    Bioinformatics (27 July 2007), btm380.
    by Andrzej Kolinski, Dominik Gront
    posted to project1 by carlescorbi on 2007-10-31 12:21:14 as ** along with 2 people rabio sekmi
  • Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.
    Nucleic Acids Res, Vol. 31, No. 24. (15 December 2003), pp. 7189-7198.
    by S Jones, HP Shanahan, HM Berman, JM Thornton
    posted to project1 by carlescorbi on 2007-10-21 18:13:05 as **** along with 2 people kaarsinogen medic0747
  • A method for simultaneous alignment of multiple protein structures.
    Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156.
    by M Shatsky, R Nussinov, HJ Wolfson
    posted to project1 protein structures by carlescorbi on 2007-10-21 17:48:14 as **** along with 3 people nachtalp analogAI j3xucite
  • Three-dimensional profiles: a new tool to identify protein surface similarities
    Journal of Molecular Biology, Vol. 284, No. 4. (11 December 1998), pp. 1211-1221.
    by Manuel de Rinaldis, Gabriele Ausiello, Gianni Cesareni, Manuela Helmer-Citterich
    posted to 3d comparation project1 surface by carlescorbi on 2007-10-20 11:58:26 as read along with 2 people nickolay Evangelia
  • Protein-ligand docking: Current status and future challenges.
    Proteins (21 July 2006)
    by Sérgio Filipe F Sousa, Pedro Alexandrino A Fernandes, Maria João J Ramos
    posted to docking review by carlescorbi on 2007-10-17 17:30:05 as ** along with 5 people and 1 group BragilMassoud yongzhao peprovy kazemi sergio_fms TSRI_MGL
  • Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions
    Protein Sci, Vol. 14, No. 2. (1 February 2005), pp. 316-328.
    by Yuhua Duan, Boojala V Reddy, Yiannis N Kaznessis
    posted to 3d binding docking project1 by carlescorbi on 2007-10-16 17:50:59 as ** along with 2 people bicko ameetsoni
  • Comparing protein-ligand docking programs is difficult.
    Proteins (3 June 2005)
    by Jason C C Cole, Christopher W W Murray, J Willem M W Nissink, Richard D D Taylor, Robin Taylor
    posted to docking project1 by carlescorbi on 2007-10-16 11:18:23 as ** along with 7 people and 3 groups BragilMassoud dgruiz thaliana yongzhao sangeetha kzfm peprovy Bioinformatics TSRI_MGL insilicodrug
  • A semiempirical free energy force field with charge-based desolvation.
    J Comput Chem (1 February 2007)
    by Ruth Huey, Garrett M M Morris, Arthur J J Olson, David S S Goodsell
    posted to docking project1 by carlescorbi on 2007-10-16 09:33:44 as read along with 1 person BragilMassoud
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to no-tag by carlescorbi on 2007-10-13 21:07:11 as ** along with 7 people timg bicko chad_davis ruvido cjeans yalexeev middledomain
  • Essential dynamics of proteins.
    Proteins, Vol. 17, No. 4. (December 1993), pp. 412-425.
    by A Amadei, AB Linssen, HJ Berendsen
    posted to corex docking dynamics molecular by carlescorbi on 2007-10-09 19:26:54 as ** along with 8 people and 1 group nigham dimka baaden aqeel yongzhao ttjoseph ffranca allmensch TSRI_MGL
  • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    Journal of Computational Chemistry, Vol. 19, No. 14. (6 January 1999), pp. 1639-1662.
    by Garrett M Morris, David S Goodsell, Robert S Halliday, Ruth Huey, William E Hart, Richard K Belew, Arthur J Olson
    posted to no-tag by carlescorbi on 2007-10-08 20:58:32 as ** along with 12 people and 1 group simone andreramme LamBras dgruiz nachtalp P2324548 yongzhao peprovy tovrstra papatonyhill schlauchi middledomain TSRI_MGL
  • Sequence, Structure and Energetic Determinants of Phosphopeptide Selectivity of SH2 Domains
    Journal of Molecular Biology, Vol. 334, No. 4. (5 December 2003), pp. 823-841.
    by Felix B Sheinerman, Bissan Al-Lazikani, Barry Honig
    posted to electrostatic by carlescorbi on 2007-10-04 11:44:04 as ** along with 1 person Evangelia
  • Electrostatic aspects of protein-protein interactions
    Current Opinion in Structural Biology, Vol. 10, No. 2. (1 April 2000), pp. 153-159.
    by Felix B Sheinerman, Raquel Norel, Barry Honig
    posted to electrostatic interactions protein-protein by carlescorbi on 2007-10-04 11:42:20 as ** along with 2 people mikaellund cjeans
  • On the role of electrostatic interactions in the design of protein-protein interfaces.
    J Mol Biol, Vol. 318, No. 1. (19 April 2002), pp. 161-177.
    by FB Sheinerman, B Honig
    posted to design electrostatic interfaces protein-protein by carlescorbi on 2007-10-04 11:41:11 as ** along with 2 people higueruelo chad_davis
  • Molecular dynamics simulation study for LRH-1: Interaction with fragments of SHP and function of phospholipid ligand
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Tao Zhang, Jun-Hong Zhou, Liang-Wei Shi, Rui-Xin Zhu, Min-Bo Chen
    posted to dynamics molecular simulation by carlescorbi on 2007-10-02 18:07:14 as read
  • Automated prediction of ligand-binding sites in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Rodney Harris, Arthur J Olson, David S Goodsell
    posted to ligand-binding prediction by carlescorbi on 2007-10-02 17:24:41 as read along with 2 people tjimenez RamuAnandakrishnan
  • Rational design of affinity peptide ligand by flexible docking simulation
    Journal of Chromatography A, Vol. 1146, No. 1. (30 March 2007), pp. 41-50.
    by Fu-Feng Liu, Tao Wang, Xiao-Yan Dong, Yan Sun
    posted to binding bioinformatics docking flexible by carlescorbi on 2007-09-21 13:22:46 as **
  • Phage display for engineering and analyzing protein interaction interfaces
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Sachdev S Sidhu, Shohei Koide
    posted to display phage by carlescorbi on 2007-09-20 17:01:23 as ** along with 1 person higueruelo
  • Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease.
    Proteins, Vol. 27, No. 2. (February 1997), pp. 171-183.
    by VJ Hilser, E Freire
    posted to corex by carlescorbi on 2007-09-20 16:15:43 as **
  • Structure-based Calculation of the Equilibrium Folding Pathway of Proteins. Correlation with Hydrogen Exchange Protection Factors
    Journal of Molecular Biology, Vol. 262, No. 5. (11 October 1996), pp. 756-772.
    by Vincent J Hilser, Ernesto Freire
    posted to corex by carlescorbi on 2007-09-20 16:10:48 as **
  • HMMoC a compiler for hidden Markov models
    Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2485-2487.
    by Gerton Lunter
    posted to bioinformatics by carlescorbi on 2007-09-18 08:58:21 as * along with 6 people Alfie jyuh operon AaronDarling rdiaz niallhaslam
  • SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family
    Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328.
    by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H Citterich
    posted to binding domains probability protein protein-protein recognition by carlescorbi on 2007-09-13 11:36:46 as ** along with 2 people Evangelia biehl
  • Automatic generation of 3D motifs for classification of protein binding sites
    BMC Bioinformatics, Vol. 8 (30 August 2007), 321.
    by Jean-Christophe Nebel, Pawel Herzyk, David R Gilbert
    posted to 3d binding classification motifs protein sites by carlescorbi on 2007-09-11 20:02:07 as ** along with 3 people shadowman Evangelia Minty
  • The structure and function of proline-rich regions in proteins.
    Biochem J, Vol. 297 ( Pt 2) (15 January 1994), pp. 249-260.
    by MP Williamson
    posted to ppii structure by carlescorbi on 2007-09-11 18:52:14 as **
  • Recognition of Proline-Rich Motifs by Protein-Protein-Interaction Domains
    Angewandte Chemie International Edition, Vol. 44, No. 19. (2005), pp. 2852-2869.
    by Linda J Ball, Ronald Kühne, Jens Schneider-Mergener, Hartmut Oschkinat
    posted to domains motifs proline-rich protein-protein recognition requeriments structure by carlescorbi on 2007-09-11 17:53:40 as ** along with 1 person Evangelia
  • Interaction-Site Prediction for Protein Complexes: a Critical Assessment
    Bioinformatics (22 June 2007), btm323.
    by Huan-Xiang Zhou, Sanbo Qin
    posted to bioinformatics prediction protein-protein by carlescorbi on 2007-09-11 14:03:20 as **** along with 9 people higueruelo tjimenez bicko malcook zwang cabbagezs niallhaslam marti phoenixzxl
  • Statistical methods for analyzing biological sequences - US Patent 7016786
    by Ranagthan
    posted to no-tag by carlescorbi on 2007-09-10 16:41:58 as **
  • Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777.
    by B Ma, T Elkayam, H Wolfson, R Nussinov
    posted to interactions project1 protein-protein by carlescorbi on 2007-09-10 13:40:12 as ** along with 8 people and 2 groups mdimmic barry bicko lyongu nickolay choonpeng cjeans ladab structural_bioinformatics Bioinformatics
  • Evolutionarily conserved networks of residues mediate allosteric communication in proteins.
    Nat Struct Biol, Vol. 10, No. 1. (January 2003), pp. 59-69.
    by GM Süel, SW Lockless, MA Wall, R Ranganathan
    posted to allosteric communication large-scale mediate residues by carlescorbi on 2007-09-09 14:51:25 as ** along with 15 people and 3 groups ca3295 lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge mingzhi yalexeev weisblum biomedical-nlp BioinfoCIPF SGU-CIPF
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