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bpbs library [212 articles]

Neue Artikel in bpbs library ordered by importance.
  • The complete genome of an individual by massively parallel DNA sequencing
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876.
    by David A Wheeler, Maithreyan Srinivasan, Michael Egholm, Yufeng Shen, Lei Chen, Amy Mcguire, Wen He, Yi-Ju Chen, Vinod Makhijani, Thomas G Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L Turcotte, Gerard P Irzyk, James R Lupski, Craig Chinault, Xing-Zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M Muzny, Marcel Margulies, George M Weinstock, Richard A Gibbs, Jonathan M Rothberg
    posted to wgs watson human genome 454 by bpb on 2008-04-30 10:26:48 as ***** along with 11 people and 2 groups jyuh Neeperando dbensasson Huub_odc orzenil dullhunk djkt ramensky psique caseybrown melting microbiology_nijmegen parkinson's disease references
  • The structure of protein evolution and the evolution of protein structure
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Richard A Goldstein
    posted to function lattice-model protein protein-evolution structure by bpb on 2008-04-21 12:36:21 as ***** along with 2 people zwang cmzmasek
  • The phusion assembler.
    Genome Res, Vol. 13, No. 1. (2003), pp. 81-90.
    by JC Mullikin, Z Ning
    posted to assembly genome phusion wgs by bpb on 2007-08-29 10:26:56 as ***** along with 3 people azazello wenhan dmc
  • Phylogeny estimation and hypothesis testing using maximum likelihood
    Ann. Rev. Ecol. Syst., Vol. 28 (1997), pp. 437-466.
    by JP Huelsenbeck, KA Crandall
    posted to evolution hypothesis likelihood-ratio-test maximum-likelihood phylogenetics by bpb on 2007-07-12 17:38:58 as ***** along with 1 person pradiptaray
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to popcorn systemsbiology by bpb on 2006-02-08 11:58:16 as ***** along with 10 people and 3 groups thomaskelder shikin snuppepuppan BioGeek dragonrez okarsligil opheliav wnpx gurkanbebek raiyar GeneGo Bioinformatics steinmetzlab
  • Mapping the Antigenic and Genetic Evolution of Influenza Virus
    Science, Vol. 305, No. 5682. (16 July 2004), pp. 371-376.
    by Derek J Smith, Alan S Lapedes, Jan C de Jong, Theo M Bestebroer, Guus F Rimmelzwaan, Albert D Osterhaus, Ron A Fouchier
    posted to antigenicity computational crucial evolution influenza by bpb on 2005-07-14 12:16:53 as ***** along with 1 person skumagai
  • Evolutionary dynamics on graphs
    Nature, Vol. 433, No. 7023. (20 January 2005), pp. 312-316.
    by Erez Lieberman, Christoph Hauert, Martin A Nowak
    posted to evolution graph by bpb on 2005-06-20 17:33:48 as ***** along with 14 people and 4 groups balicea saket mague Borelli shivakumar3_14 cmm pbellec kehan zono jaspervoskuilen timflutre marcusfrean qwermish tomrevilla biodiversity_conservation Bioinformatics FAB-lab GrassBase
  • More genes underwent positive selection in chimpanzee evolution than in human evolution.
    Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7489-7494.
    by MA Bakewell, P Shi, J Zhang
    posted to chimp evolution genome human by bpb on 2007-08-29 10:23:26 as **** along with 3 people Garamonfok pradiptaray usagi-kirin
  • Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study.
    Biochemistry, Vol. 41, No. 25. (25 June 2002), pp. 8152-8161.
    by S Chakravarty, R Varadarajan
    posted to protein thermophiles by bpb on 2007-04-02 10:03:33 as **** along with 1 person gisle
  • Mathematical elegance with biochemical realism: The covarion model of molecular evolution
    J. Mol. Evol., Vol. 53, No. 6. (2001), pp. 711-723.
    by D Penny, BJ Mccomish, MA Charleston, MD Hendy
    posted to evolution phylogenetics siteclass by bpb on 2007-03-27 11:19:42 as ****
  • Cold-adapted enzymes.
    Annu Rev Biochem, Vol. 75 (2006), pp. 403-433.
    by KS Siddiqui, R Cavicchioli
    posted to review psychrophiles protein enzyme by bpb on 2007-02-05 21:22:53 as **** along with 1 person gisle
  • The molecular population genetics of HIV-1 group O.
    Genetics, Vol. 167, No. 3. (July 2004), pp. 1059-1068.
    by P Lemey, OG Pybus, A Rambaut, AJ Drummond, DL Robertson, P Roques, M Worobey, AM Vandamme
    posted to hiv population by bpb on 2006-05-30 11:04:42 as ****
  • A Robust Measure of HIV-1 Population Turnover Within Chronically Infected Individuals
    Mol Biol Evol, Vol. 21, No. 10. (1 October 2004), pp. 1902-1912.
    by G Achaz, S Palmer, M Kearney, F Maldarelli, JW Mellors, JM Coffin, J Wakeley
    posted to hiv population by bpb on 2006-05-30 11:01:38 as ****
  • Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses.
    J Virol, Vol. 79, No. 24. (December 2005), pp. 15503-15510.
    by A Narechania, Z Chen, R DeSalle, RD Burk
    posted to evolution hpv phylogenetics virus by bpb on 2006-05-15 16:37:23 as **** along with 2 people chrn pv
  • Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses.
    PLoS Biol, Vol. 3, No. 9. (September 2005)
    by EC Holmes, E Ghedin, N Miller, J Taylor, Y Bao, K St George, BT Grenfell, SL Salzberg, CM Fraser, DJ Lipman, JK Taubenberger
    posted to h3 influenza by bpb on 2005-10-11 16:25:03 as **** along with 1 person and 2 groups mattjb ComplexAdaptiveSystems DSTO-CAS
  • The evolution of human influenza viruses
    Philosophical Transactions: Biological Sciences, Vol. 356, No. 1416. (December 2001), pp. 1861-1870.
    by Alan J Hay, Victoria Gregory, Alan R Douglas, Yi P Lin
    posted to evolution glycosylation influenza virus by bpb on 2005-09-07 14:51:41 as ****
  • Comparing Folding Codes in Simple Heteropolymer Models of Protein Evolutionary Landscape: Robustness of the Superfunnel Paradigm
    Biophysical Journal, Vol. 88, No. 1. (2005), pp. 118-131.
    by Richard Wroe, Erich Bornberg-Bauer, Hue S Chan
    posted to computational evolution graph lattice-model protein-evolution selection by bpb on 2005-06-27 17:36:05 as **** along with 1 person and 1 group Einat structural_bioinformatics
  • The power of phylogenetic comparison in revealing protein function.
    Proc Natl Acad Sci U S A (22 February 2005)
    by Ziheng Yang
    posted to evolution function phylogenetics selection by bpb on 2005-06-16 16:06:23 as **** along with 4 people and 1 group mdimmic stevanspringer BioNica tale FAB-lab
  • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.
    Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238.
    by H Akashi
    posted to dna fitness mutation polymorphism selection by bpb on 2007-10-19 09:37:50 as *** along with 1 person skumagai
  • The evolutionary emergence of pandemic influenza.
    Proc Biol Sci, Vol. 273, No. 1604. (7 December 2006), pp. 2945-2953.
    by T Day, JB André, A Park
    posted to influenza h9 h7 h5 evolution by bpb on 2007-01-22 16:08:19 as ***
  • Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
    PNAS, Vol. 96, No. 7. (30 March 1999), pp. 3578-3583.
    by Paul J Haney, Jonathan H Badger, Gerald L Buldak, Claudia I Reich, Carl R Woese, Gary J Olsen
    posted to aminoacid enzyme evolution pychrophiles temperature thermophiles by bpb on 2006-09-20 12:38:43 as *** along with 2 people jmeppley neils
  • Optimal growth temperature of prokaryotes correlates with class II amino acid composition
    FEBS Letters, Vol. 580, No. 6. (6 March 2006), pp. 1672-1676.
    by Liron Klipcan, Ilya Safro, Boris Temkin, Mark Safro
    posted to aminoacid enzyme evolution pychrophiles temperature thermophiles by bpb on 2006-09-19 13:51:44 as ***
  • Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes.
    Virus Res, Vol. 113, No. 2. (November 2005), pp. 81-88.
    by AL Hughes, MA Hughes
    posted to evolution hpv phylogenetics by bpb on 2006-07-13 13:12:07 as ***
  • Realities and enigmas of human viral influenza: pathogenesis, epidemiology and control.
    Vaccine, Vol. 20, No. 25-26. (19 August 2002), pp. 3068-3087.
    by MR Hilleman
    posted to influenza overview vaccination by bpb on 2006-04-25 10:07:16 as ***
  • An algorithm for mapping positively selected members of quasispecies-type viruses.
    BMC Bioinformatics, Vol. 2 (2001)
    by JJ Stewart, P Watts, S Litwin
    posted to h3 haemagglutinin hiv influenza selection tool by bpb on 2006-03-08 14:04:06 as *** along with 2 people operon gokhan
  • Phylogenetic analysis of the three polymerase genes (PB1, PB2 and PA) of influenza B virus
    J Gen Virol, Vol. 81, No. 4. (1 April 2000), pp. 929-937.
    by Yasuaki Hiromoto, Takehiko Saito, Stephen E Lindstrom, Yixing Li, Reiko Nerome, Shigeo Sugita, Masayoshi Shinjoh, Kuniaki Nerome
    posted to influenza pa pb1 pb2 phylogenetics polymerase by bpb on 2006-02-07 16:40:03 as ***
  • The structure and function of the hemagglutinin membrane glycoprotein of influenza virus.
    Annu Rev Biochem, Vol. 56 (1987), pp. 365-394.
    by DC Wiley, JJ Skehel
    posted to function haemagglutinin influenza structure by bpb on 2006-01-26 12:18:36 as ***
  • Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
    Nature (05 October 2005)
    by Elodie Ghedin, Naomi A Sengamalay, Martin Shumway, Jennifer Zaborsky, Tamara Feldblyum, Vik Subbu, David J Spiro, Jeff Sitz, Hean Koo, Pavel Bolotov, Dmitry Dernovoy, Tatiana Tatusova, Yiming Bao, Kirsten St George, Jill Taylor, David J Lipman, Claire M Fraser, Jeffery K Taubenberger, Steven L Salzberg
    posted to evolution influenza by bpb on 2006-01-26 11:25:19 as *** along with 1 person jwortman
  • Different Versions of the Dayhoff Rate Matrix
    Molecular Biology and Evolution, Vol. 22, No. 2., 193.
    by Carolin Kosiol, Nick Goldman
    posted to evolution matrix phylogenetics by bpb on 2005-11-15 13:58:24 as *** along with 1 person Haggan
  • Influenza--WHO cares.
    Lancet Infect Dis, Vol. 2, No. 9. (September 2002)
    by K Stöhr
    posted to influenza mortality by bpb on 2005-10-11 17:13:20 as ***
  • Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
    Annual Review of Ecology and Systematics, Vol. 28 (1997), pp. 437-466.
    by John P Huelsenbeck, Keith A Crandall
    posted to computational evolution maximum-likelihood phylogenetics by bpb on 2005-10-06 11:34:15 as ***
  • Divergent genetic evolution of hemagglutinin in influenza A H1N1 and A H1N2 subtypes isolated in the south-France since the winter of 2001-2002.
    J Clin Virol, Vol. 33, No. 3. (July 2005), pp. 230-236.
    by S Al Faress, G Cartet, O Ferraris, H Norder, M Valette, B Lina
    posted to evolution glycosylation influenza by bpb on 2005-09-27 09:08:12 as ***
  • Predicting the Evolution of Human Influenza A
    Science, Vol. 286, No. 5446. (03 December 1999), pp. 1921-1925.
    by Robin M Bush, Catherine A Bender, Kanta Subbarao, Nancy J Cox, Walter M Fitch
    posted to evolution influenza by bpb on 2005-09-16 14:11:33 as ***
  • Modelling molecular stability in the RNA world
    Computational Biology and Chemistry, Vol. 29, No. 4. (August 2005), pp. 259-272.
    by William R Taylor
    posted to origin-of-life rna rna-world by bpb on 2005-09-13 20:30:22 as *** along with 1 person dayjm
  • Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2832-2837.
    by SL Sawyer, LI Wu, M Emerman, HS Malik
    posted to evolution phylogenetics protein-evolution selection by bpb on 2005-06-28 12:38:06 as *** along with 3 people and 2 groups stevanspringer macowell xwbcn FAB-lab BUiGEM
  • Transmissibility of 1918 pandemic influenza
    Nature, Vol. 432, No. 7019. (16 December 2004), pp. 904-906.
    by Christina E Mills, James M Robins, Marc Lipsitch
    posted to influenza by bpb on 2005-06-16 15:34:36 as *** along with 1 person claudine
  • Computational science Can get satisfaction
    Nature, Vol. 435, No. 7043. (08 June 2005), pp. 751-752.
    by Carla P Gomes, Bart Selman
    posted to computational by bpb on 2005-06-16 10:29:08 as ***
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to phylogeny phyloalignment alignment by bpb on 2008-06-26 12:19:19 as ** along with 18 people and 1 group AbnerCYH michaelbarton bpcusack bmaust gulsacan Schmidtc zwang aprasad imtechnology marck ArtemPankin djkt gjuggler hpaces dinnes chad_davis jago phoenixzxl Khavkin's lab
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
    posted to sequencing 454 by bpb on 2008-05-01 11:47:03 as ** along with 23 people and 5 groups jlgreen kieran101 GustavoLacerda farhat mcox carpi bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin azazello beatrizfernandez wenhan xingxu erbon tpreeprem iSEEM Green Lab Microbial-Ecology GIG gatech-compgenomics
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to variation structure-variation human genome by bpb on 2008-05-01 09:25:30 as ** along with 15 people and 1 group jyuh chrisamiller maximilianh vplagnol kintoki chad_davis Ema hpaces aprasad kaniko psique shikin balicea djkt dchughes GeneGo
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to snp quality nst genome by bpb on 2008-05-01 09:11:00 as ** along with 5 people caseybrown dbensasson sharpton GustavoLacerda Neeperando
  • Subnets of scale-free networks are not scale-free: sampling properties of networks.
    Proc Natl Acad Sci U S A, Vol. 102, No. 12. (22 March 2005), pp. 4221-4224.
    by MP Stumpf, C Wiuf, RM May
    posted to network sampling scale-free statistics by bpb on 2008-04-21 13:25:55 as ** along with 8 people mjoach ilkert kentsis griota lshaw somasanyal iris_2001 Pao-Yang
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to cnv genome genomics structure-variation variation by bpb on 2008-04-04 17:19:40 as ** along with 25 people and 6 groups pradiptaray daed Ema srp33 jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • Bayesian correction for SNP ascertainment bias
    Lect. Notes Comput. Sci., Vol. 3885 LNAI, pp. 262-273.
    by MM Abad-Grau, P Sebastiani
    posted to bayesian bayessnp linkage-disequilibrium by bpb on 2008-03-11 09:41:34 as **
  • Bayesian estimates of linkage disequilibrium
    BMC Genetics, Vol. 8 (25 June 2007), 36.
    by Paola Sebastiani, Maria M Abad-Grau
    posted to bayesian bayessnp linkage-disequilibrium snp by bpb on 2008-03-11 09:39:44 as **
  • Molecular signatures of natural selection.
    Annual Review in Genetics, Vol. 39 (2005), pp. 197-218.
    by R Nielsen
    posted to detection genome mutation selection variation by bpb on 2008-02-18 10:57:22 as ** along with 7 people pradiptaray BioNica jasonflannick operon eckart_bindewald timflutre dmc
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment phyloalignment phylogeny test by bpb on 2008-01-25 10:03:51 as ** along with 24 people and 2 groups bpcusack pradiptaray jdelcampo timflutre gracio adacier jyuh aprasad dayjm dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Bayesian coestimation of phylogeny and sequence alignment.
    BMC Bioinformatics, Vol. 6 (2005)
    by G Lunter, I Miklós, A Drummond, JL Jensen, J Hein
    posted to alignment bayesian phyloalignment phylogeny by bpb on 2008-01-25 10:02:38 as ** along with 5 people pradiptaray Patola AaronDarling timflutre adsmitty
  • A Space-Time Process Model for the Evolution of DNA Sequences
    Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005.
    by Z Yang
    posted to gamma model paml phylogenetics by bpb on 2007-12-13 15:48:31 as ** along with 3 people pradiptaray tale friendpine
  • Orthologous repeats and mammalian phylogenetic inference.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 998-1006.
    by A Bashir, C Ye, AL Price, V Bafna
    posted to mammal phylogeny by bpb on 2007-12-13 14:16:50 as ** along with 1 person aprasad
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