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bootsys library [304 articles]

Neue Artikel in bootsys library ordered by importance.
  • Prediction of protein function from protein sequence and structure.
    Q Rev Biophys, Vol. 36, No. 3. (August 2003), pp. 307-340.
    by JC Whisstock, AM Lesk
    posted to functional prediction protein by bootsy on 2007-05-03 10:19:01 as ***** along with 3 people and 1 group tjimenez tmmurali okarsligil Bioinformatics
  • Function prediction and protein networks.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 191-198.
    by MA Huynen, B Snel, C von Mering, P Bork
    posted to functional network protein by bootsy on 2007-04-28 13:12:17 as ***** along with 4 people and 1 group carlk lfriedl balajis lyongu kdl
  • Stochastic switching as a survival strategy in fluctuating environments
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475.
    by Murat Acar, Jerome T Mettetal, Alexander van Oudenaarden
    posted to bootsy evolution by bootsy on 2008-03-27 13:50:31 as **** along with 10 people and 1 group brianb A_Olympia operon jjray gokhan dbikard margaritis qwermish fjvico osilander GEB
  • From functional genomics to systems biology.
    FEBS J (19 April 2007)
    by Sergii Ivakhno
    posted to functional genomics by bootsy on 2007-04-28 13:18:51 as **** along with 1 person nicoleq
  • FUNCTIONAL GENOMICS: A comparative success
    Nature Reviews Genetics, Vol. 6, No. 1. (01 January 2005), pp. 8-8.
    by Tanita Casci
    posted to functional genomics by bootsy on 2007-04-28 13:15:42 as ****
  • Escalating model sizes and complexities call for standardized forms of representation
    Molecular Systems Biology, Vol. 1, No. 1. (25 May 2005), pp. msb4100015-E1-msb4100015-E2.
    by Michael Hucka, Andrew Finney
    posted to systems_biology sbml by bootsy on 2007-11-07 08:57:33 as *** along with 1 person and 2 groups rhem1224 TCR_Signaling SysbioMPI-TCells
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification.
    Bioinformatics (31 October 2007)
    by Hyunjung Shin, Andreas Martin M Lisewski, Olivier Lichtarge
    posted to functional network prediction protein semi_supervised by bootsy on 2007-11-07 07:25:36 as *** along with 2 people tmmurali Pao-Yang
  • Functional genomics and proteomics as a foundation for systems biology.
    Brief Funct Genomic Proteomic, Vol. 2, No. 3. (October 2003), pp. 175-184.
    by K Aggarwal, KH Lee
    posted to functional genomics by bootsy on 2007-04-28 13:20:23 as *** along with 3 people holan biosv maburkitt
  • Metagenomics reveals our incomplete knowledge of global diversity.
    Bioinformatics (Oxford, England) (13 July 2008)
    by Miguel Pignatelli, Gabriel Aparicio, Ignacio Blanquer, Vicente Hernández, Andrés Moya, Javier Tamames
    posted to genomics bootsy by bootsy on 2008-07-18 08:57:30 as **
  • Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
    Genome Res. (9 July 2008), gr.078246.108.
    by Jeffrey G Reid, Francis C Lynn, Ankur K Nagaraja, Rafal B Drabek, Donna M Muzny, Chad A Shaw, Michelle K Weiss, Arash O Naghavi, Mahjabeen F Khan, Huifeng Zhu, Gemunu H Gunaratne, David B Corry, Jonathan N Miller, Michael S German, Richard A Gibbs, Martin M Matzuk, Preethi H Gunaratne
    posted to mouse microrna by bootsy on 2008-07-14 08:20:47 as ** along with 1 person maralena
  • Seeking a New Biology through Text Mining
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 9-13.
    by Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
    posted to t by bootsy on 2008-07-14 08:15:09 as ** along with 2 people jyuh pzoot
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to regulatory_network evolution by bootsy on 2008-07-14 08:09:06 as ** along with 5 people and 1 group djkt dquest Stew dlobo Ema GEB
  • Synchronous vs. Asynchronous Modeling of Gene Regulatory Networks.
    Bioinformatics (Oxford, England) (9 July 2008)
    by Abhishek Garg, Alessandro Dicara, Ioannis Xenarios, Luis Mendoza, Giovanni De D Micheli
    posted to tool systems_biology regulatory_network qualitative_modeling boolean_simulation by bootsy on 2008-07-14 08:05:54 as **
  • MicroRNA regulation and the variability of human cortical gene expression.
    Nucleic acids research (10 July 2008)
    by Rui Zhang, Bing Su
    posted to regulation microrna expression by bootsy on 2008-07-14 08:01:45 as ** along with 1 person maralena
  • Defining diversity, specialization, and gene specificity in transcriptomes through information theory.
    Proceedings of the National Academy of Sciences of the United States of America (7 July 2008)
    by Octavio Martínez, M Humberto H Reyes-Valdés
    posted to transcriptome tissue-specific by bootsy on 2008-07-10 08:34:22 as ** along with 1 person jjray
  • Gene network dynamics controlling keratinocyte migration
    Mol Syst Biol, Vol. 4 (1 July 2008)
    by Hauke Busch, David Camacho-Trullio, Zbigniew Rogon, Kai Breuhahn, Peter Angel, Roland Eils, Axel Szabowski
    posted to qualitative_modeling by bootsy on 2008-07-06 07:48:33 as **
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by MT Dittrich, GW Klau, A Rosenwald, T Dandekar, T Müller
    posted to tool ppi functional_module by bootsy on 2008-07-06 07:43:33 as ** along with 1 person marck
  • MicroRNA prediction with a novel ranking algorithm based on random walks.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by Y Xu, X Zhou, W Zhang
    posted to tool prediction microrna by bootsy on 2008-07-06 07:35:57 as **
  • A max-margin model for efficient simultaneous alignment and folding of RNA sequences.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by CB Do, CS Foo, S Batzoglou
    posted to tool rna by bootsy on 2008-07-06 07:33:45 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks.
    Bioinformatics (Oxford, England) (2 July 2008)
    by Yung-Keun K Kwon, Kwang-Hyun H Cho
    posted to signaling network feedback_loop by bootsy on 2008-07-06 07:29:22 as ** along with 2 people jjray maralena
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to expression evolution bootsy by bootsy on 2008-07-03 13:20:18 as ** along with 2 people Ema jjray
  • Horizontal gene transfer in eukaryotic evolution.
    Nature reviews. Genetics (1 July 2008)
    by Patrick J J Keeling, Jeffrey D D Palmer
    posted to evolution bootsy by bootsy on 2008-07-03 13:19:45 as **
  • The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene
    Proceedings of the National Academy of Sciences (25 June 2008), 0800650105.
    by Yi W Kong, Ian G Cannell, Cornelia H de Moor, Kirsti Hill, Paul G Garside, Tiffany L Hamilton, Hedda A Meijer, Helen C Dobbyn, Mark Stoneley, Keith A Spriggs, Anne E Willis, Martin Bushell
    posted to regulation promoter microrna by bootsy on 2008-06-30 11:35:03 as ** along with 1 person maralena
  • Comparative analyses of bidirectional promoters in vertebrates.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by MQ Yang, J Taylor, L Elnitski
    posted to promoter genomics analysis by bootsy on 2008-06-30 11:26:44 as ** along with 1 person jjray
  • Systems biology driven software design for the research enterprise
    BMC Bioinformatics, Vol. 9 (25 June 2008), 295.
    by John Boyle, Christopher Cavnor, Sarah Killcoyne, Ilya Shmulevich
    posted to tool systems_biology software by bootsy on 2008-06-30 11:16:35 as ** along with 3 people jyuh reyez raistrick
  • Highly sensitive and specific microRNA expression profiling using BeadArray technology.
    Nucleic acids research (25 June 2008)
    by Jing Chen, Jean Lozach, Eliza Wickham W Garcia, Bret Barnes, Shujun Luo, Ivan Mikoulitch, Lixin Zhou, Gary Schroth, Jian-Bing B Fan
    posted to tissue-specific microrna expression by bootsy on 2008-06-30 11:12:52 as ** along with 1 person jyuh
  • Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites.
    Nucleic acids research (26 June 2008)
    by Nan Li, Alex S S Flynt, H Rosemary R Kim, Lilianna Solnica-Krezel, James G G Patton
    posted to zebrafish regulation microrna by bootsy on 2008-06-30 11:05:05 as **
  • The Systems Biology Research Tool: evolvable open-source software
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Jeremiah Wright, Andreas Wagner
    posted to tool systems_biology by bootsy on 2008-06-30 11:00:21 as ** along with 3 people jyuh renatomilani reyez
  • Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing.
    RNA (New York, N.Y.) (19 June 2008)
    by Martin A A Newman, J Michael M Thomson, Scott M M Hammond
    posted to processing post_transcriptional microrna_regulation microrna by bootsy on 2008-06-25 08:41:32 as **
  • Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
    Genome research (18 June 2008)
    by Marcel E E Dinger, Paulo P P Amaral, Tim R R Mercer, Ken C C Pang, Stephen J J Bruce, Brooke B B Gardiner, Marjan E E Askarian-Amiri, Kelin Ru, Giulia Solda, Cas Simons, Susan M M Sunkin, Mark L L Crowe, Sean M M Grimmond, Andrew C C Perkins, John S S Mattick
    posted to stem_cell nc_rna mouse by bootsy on 2008-06-25 08:35:15 as **
  • Inferring causal relationships among different histone modifications and gene expression
    Genome Res. (18 June 2008), gr.073080.107.
    by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J Han
    posted to expression epigenetics by bootsy on 2008-06-25 08:30:57 as ** along with 5 people sharmapank bcondon ptrobajo rschulz fpattyn
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to microrna cell_proliferation by bootsy on 2008-06-25 08:28:26 as ** along with 5 people faion dchughes emptyhb lisa1 djkt
  • Systematic reconstruction of TRANSPATH data into Cell System Markup Language
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Masao Nagasaki, Ayumu Saito, Chen Li, Euna Jeong, Satoru Miyano
    posted to systems_biology resource quantitative_modeling database by bootsy on 2008-06-25 08:18:14 as ** along with 1 person reyez
  • A computational analysis of the protein-protein interaction networks in neurodegenerative diseases
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Joaquin Goni, Francisco Esteban, Nieves V de Mendizabal, Jorge Sepulcre, Sergio A Treijano, Ion Agirrezabal, Pablo Villoslada
    posted to ppi network disease analysis by bootsy on 2008-06-20 14:44:44 as ** along with 3 people AbnerCYH reyez renatomilani
  • Splicing and dicing with a SERRATEd edge.
    Proceedings of the National Academy of Sciences of the United States of America (16 June 2008)
    by Taiowa A A Montgomery, James C C Carrington
    posted to splicing processing microrna by bootsy on 2008-06-20 09:12:30 as **
  • Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
    Proceedings of the National Academy of Sciences of the United States of America (12 June 2008)
    by Sascha Laubinger, Timo Sachsenberg, Georg Zeller, Wolfgang Busch, Jan U U Lohmann, Gunnar Rätsch, Detlef Weigel
    posted to splicing processing microrna arabidopsis by bootsy on 2008-06-17 07:55:09 as **
  • The microRNA.org resource: targets and expression.
    Nucleic Acids Res (23 December 2007)
    by Doron Betel, Manda Wilson, Aaron Gabow, Debora S S Marks, Chris Sander
    posted to microrna expression database by bootsy on 2008-06-13 11:56:46 as ** along with 4 people jyuh jfr heliopais maralena
  • A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs.
    Nucleic Acids Res (13 March 2007)
    by Iwan Beuvink, Fabrice A A Kolb, Wolfgang Budach, Arlette Garnier, Joerg Lange, Francois Natt, Uwe Dengler, Jonathan Hall, Witold Filipowicz, Jan Weiler
    posted to tissue-specific microrna mammalian expression by bootsy on 2008-06-13 11:55:28 as ** along with 3 people and 1 group jfr tardigrade andersbj microRNA
  • A custom microarray platform for analysis of microRNA gene expression.
    Nat Methods, Vol. 1, No. 1. (October 2004), pp. 47-53.
    by JM Thomson, J Parker, CM Perou, SM Hammond
    posted to microrna expression by bootsy on 2008-06-13 11:54:23 as ** along with 2 people jfr tardigrade
  • Inferring microRNA activities by combining gene expression with microRNA target prediction.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by C Cheng, LM Li
    posted to microrna expression by bootsy on 2008-06-12 12:10:54 as **
  • Everything you wanted to know about small RNA but were afraid to ask
    Laboratory Investigation, Vol. aop, No. current.
    by Scott D Boyd
    posted to regulation microrna disease by bootsy on 2008-06-12 12:07:30 as ** along with 3 people and 1 group heliopais balicea GustavoLacerda microRNA
  • TiGER: a database for tissue-specific gene expression and regulation
    BMC Bioinformatics, Vol. 9 (09 June 2008), 271.
    by Xiong Liu, Xueping Yu, Donald J Zack, Heng Zhu, Jiang Qian
    posted to regulation expression database by bootsy on 2008-06-12 09:31:51 as ** along with 2 people jyuh reyez
  • Enriched Transcription Factor Binding Sites in Hypermethylated Gene Promoters in Drug Resistant Cancer Cells.
    Bioinformatics (Oxford, England) (6 June 2008)
    by Meng Li, Hyun-Il Henry I Paik, Curt Balch, Yoosung Kim, Lang Li, Tim H-M H Huang, Kenneth P P Nephew, Sun Kim
    posted to transcription_factor dna_modification cancer by bootsy on 2008-06-11 08:41:34 as **
  • Combinatorial microRNA target predictions
    Nature Genetics, Vol. 37, No. 5. (03 April 2005), pp. 495-500.
    by Azra Krek, Dominic Grün, Matthew N Poy, Rachel Wolf, Lauren Rosenberg, Eric J Epstein, Philip Macmenamin, Isabelle d da Piedade, Kristin C Gunsalus, Markus Stoffel, Nikolaus Rajewsky
    posted to tool regulation prediction microrna by bootsy on 2008-06-10 08:01:05 as ** along with 10 people and 1 group maralena tmmurali textoris jfr eckart_bindewald tardigrade mtagaya feipan lp2 heliopais microRNA
  • MicroRNA-target pairs in the rat kidney identified by microRNA microarray, proteomic, and bioinformatic analysis.
    Genome Res (29 January 2008)
    by Zhongmin Tian, Andrew S S Greene, Jennifer L L Pietrusz, Isaac R R Matus, Mingyu Liang
    posted to regulation proteomic microrna expression analysis by bootsy on 2008-06-10 07:59:10 as ** along with 4 people and 1 group lp2 jyuh heliopais maralena microRNA
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
    Nucleic acids research (4 June 2008)
    by Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to tool pathway network analysis by bootsy on 2008-06-07 22:48:22 as ** along with 2 people jyuh Borelli
  • A computational screen for mouse signaling pathways targeted by microRNA clusters.
    RNA (New York, N.Y.) (29 May 2008)
    by Jianzhen Xu, Chiwai Wong
    posted to signaling regulation pathway mouse microrna_cluster by bootsy on 2008-06-02 15:21:09 as **
  • Evolution and Creationism in America's Classrooms: A National Portrait.
    PLoS biology, Vol. 6, No. 5. (20 May 2008)
    by Michael B B Berkman, Julianna Sandell S Pacheco, Eric Plutzer
    posted to evolution bootsy by bootsy on 2008-05-30 09:06:18 as ** along with 1 person chuxley
  • Coordinated regulation of transcription factors through Notch2 is an important mediator of mast cell fate.
    Proceedings of the National Academy of Sciences of the United States of America (22 May 2008)
    by Mamiko Sakata-Yanagimoto, Etsuko Nakagami-Yamaguchi, Toshiki Saito, Keiki Kumano, Koji Yasutomo, Seishi Ogawa, Mineo Kurokawa, Shigeru Chiba
    posted to transcription_factor notch_pathway by bootsy on 2008-05-25 09:25:24 as **
  • RNALogo: a new approach to display structural RNA alignment.
    Nucleic acids research (21 May 2008)
    by Tzu-Hao H Chang, Jorng-Tzong T Horng, Hsien-Da D Huang
    posted to tool structure nc_rna alignment by bootsy on 2008-05-24 10:15:54 as ** along with 1 person reyez
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