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barrys electrostatics [28 articles]

Neue Publikationen in barrys Bibliothek eingetragen unter dem Bezeichner: electrostatics. You can also see everyone's electrostatics.
  • Salt-Mediated Electrostatics in the Association of TATA Binding Proteins to DNA: A Combined Molecular Mechanics/Poisson-Boltzmann Study
    Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. 4634-4645.
    by Johan H Bredenberg, Cristina Russo, Marcia O Fenley
    posted to solvation protein_dna electrostatics by barry on 2008-08-29 19:08:02 as *** along with 1 person and 3 groups sobolevnrm structural_bioinformatics McCammon baker-group
  • Association of Aminoglycosidic Antibiotics with the Ribosomal A-Site Studied with Brownian Dynamics
    J. Chem. Theory Comput., Vol. 4, No. 4. (8 April 2008), pp. 549-559.
    by Maciej Długosz, Jan M Antosiewicz, Joanna Trylska
    posted to electrostatics brownian_dynamics by barry on 2008-07-08 01:22:26 as ** along with 1 person and 2 groups sobolevnrm McCammon baker-group
  • Protonation free energy levels in complex molecular systems
    Biopolymers, Vol. 9999, No. 9999. (2007), NA.
    by Jan M Antosiewicz
    posted to titration electrostatics by barry on 2008-07-08 01:15:32 as ** along with 1 person and 2 groups sobolevnrm McCammon baker-group
  • The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff
    Journal of Computational Chemistry, Vol. 29, No. 12. (2008), pp. 1970-1981.
    by Magdalena Gruziel, Pawel Grochowski, Joanna Trylska
    posted to electrostatics by barry on 2008-07-08 00:51:34 as ** along with 1 person and 2 groups RamuAnandakrishnan McCammon structural_bioinformatics
  • Pathway and Endpoint Free Energy Calculations for Cyclic Nucleotide Binding to HCN Channels
    Biophys. J., Vol. 94, No. 12. (15 June 2008), pp. L90-92.
    by Lei Zhou, Steven A Siegelbaum
    posted to protein-ligand md_simulation free_energy electrostatics binding by barry on 2008-07-08 00:49:17 as ** along with 1 person and 1 group jmccammon McCammon
  • Determination of electrostatic interaction energies and protonation state populations in enzyme active sites
    Journal of Molecular Biology, Vol. In Press, Accepted Manuscript
    by Chresten R Sondergaard, Lawrence P Mcintosh, Gianluca Pollastri, Jens E Nielsen
    posted to electrostatics solvent by barry on 2007-10-26 22:39:25 as ** along with 2 people and 2 groups sobolevnrm skoddet structural_bioinformatics baker-group
  • Supercharging Proteins Can Impart Unusual Resilience
    J. Am. Chem. Soc., Vol. 129, No. 33. (22 August 2007), pp. 10110-10112.
    by MS Lawrence, KJ Phillips, DR Liu
    posted to electrostatics journal_club protein_design protein_evolution protein_folding by barry on 2007-10-26 22:37:58 as read along with 2 people and 3 groups samjlord sobolevnrm structural_bioinformatics moernerlab baker-group
  • Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex.
    Proc Natl Acad Sci U S A, Vol. 101, No. 25. (22 June 2004), pp. 9223-9228.
    by C Kiel, T Selzer, Y Shaul, G Schreiber, C Herrmann
    posted to ras protein_protein electrostatics bd_simulation by barry on 2007-01-16 23:20:45 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • notes The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends
    Nature, Vol. 441, No. 7089., pp. 115-119.
    by Jonne Helenius, Gary Brouhard, Yannis Kalaidzidis, Stefan Diez, Jonathon Howard
    posted to electrostatics kin13 kinesin mcak molecular_motors motor_mode motor_model by barry on 2006-05-06 20:52:13 as ***** along with 2 groups structural_bioinformatics Bioinformatics
  • Repulsive interactions between polar and apolar atoms in globular proteins.
    J Mol Biol, Vol. 151, No. 1. (5 September 1981), pp. 199-202.
    by B Mao, MR Pear, JA McCammon, SH Northrup
    posted to bd_simulation electrostatics review by barry on 2005-10-11 23:35:20 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Simulation of biomolecular diffusion and complex formation.
    Biophys J, Vol. 49, No. 1. (January 1986), pp. 167-175.
    by SA Allison, SH Northrup, JA McCammon
    posted to bd_simulation electrostatics by barry on 2005-10-11 23:33:30 as ** along with 1 person and 2 groups lyongu structural_bioinformatics Bioinformatics
  • Brownian simulation of protein association and reaction
    International Journal of Quantum Chemistry, Vol. 38, No. S17., pp. 55-71.
    by Scott H Northrup, Robert G Herbert
    posted to bd_simulation electrostatics review by barry on 2005-10-11 23:33:07 as ** along with 1 person and 2 groups lyongu structural_bioinformatics Bioinformatics
  • Brownian dynamics simulation of protein association.
    J Comput Aided Mol Des, Vol. 1, No. 4. (January 1988), pp. 291-311.
    by SH Northrup, JA Luton, JO Boles, JC Reynolds
    posted to bd_simulation electrostatics review by barry on 2005-10-11 23:30:13 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Brownian dynamics of cytochrome c and cytochrome c peroxidase association.
    Science, Vol. 241, No. 4861. (1 July 1988), pp. 67-70.
    by SH Northrup, JO Boles, JC Reynolds
    posted to bd_simulation electrostatics by barry on 2005-10-11 23:29:50 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Experimental and theoretical analysis of the interaction between cytochrome c and cytochrome b5.
    J Bioenerg Biomembr, Vol. 27, No. 3. (June 1995), pp. 311-330.
    by AG Mauk, MR Mauk, GR Moore, SH Northrup
    posted to bd_simulation electrostatics by barry on 2005-10-11 23:28:22 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Dynamics of protein-protein docking: cytochrome c and cytochrome c peroxidase revisited.
    J Biomol Struct Dyn, Vol. 16, No. 2. (October 1998), pp. 413-424.
    by G Castro, CA Boswell, SH Northrup
    posted to bd_simulation electrostatics by barry on 2005-10-11 23:27:59 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Kinetics of protein-protein association explained by Brownian dynamics computer simulation.
    Proc Natl Acad Sci U S A, Vol. 89, No. 8. (15 April 1992), pp. 3338-3342.
    by SH Northrup, HP Erickson
    posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 23:23:18 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Simulation of electrostatic effects in Fab-antigen complex formation.
    Eur J Biochem, Vol. 267, No. 15. (August 2000), pp. 4861-4869.
    by F Fogolari, R Ugolini, H Molinari, P Viglino, G Esposito
    posted to bd_simulation electrostatics by barry on 2005-10-11 23:06:04 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Brownian Dynamics Simulation of Protein-Protein Diffusional Encounter
    Methods, Vol. 14, No. 3. (March 1998), pp. 329-341.
    by Razif R Gabdoulline, Rebecca C Wade
    posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 03:54:33 as ***** along with 1 person and 2 groups Martin8223 structural_bioinformatics Bioinformatics
  • Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program
    Computer Physics Communications, Vol. 91, No. 1-3. (2 September 1995), pp. 57-95.
    by Jeffry D Madura, James M Briggs, Rebecca C Wade, Malcolm E Davis, Brock A Luty, Andrew Ilin, Jan Antosiewicz, Michael K Gilson, Babak Bagheri, Ridgway L Scott, Andrew J Mccammon
    posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:25:41 as read along with 1 person and 2 groups sim82 structural_bioinformatics Bioinformatics
  • Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin.
    J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 149-162.
    by AH Elcock, RR Gabdoulline, RC Wade, JA McCammon
    posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:13:35 as *** along with 2 people and 2 groups Martin8223 mikaellund structural_bioinformatics Bioinformatics
  • Electrostatic analysis and Brownian dynamics simulation of the association of plastocyanin and cytochrome f.
    Biophys J, Vol. 81, No. 6. (December 2001), pp. 3090-3104.
    by F De Rienzo, RR Gabdoulline, MC Menziani, PG De Benedetti, RC Wade
    posted to bd_simulation bioinf_methods electrostatics by barry on 2005-10-11 02:09:35 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Affine invarient comparison of molecular shapes with properties
    (2004)
    by X Zang, C Bajaj, NA Baker
    posted to bioinf_methods electrostatics by barry on 2005-10-10 09:40:34 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity.
    Proteins, Vol. 37, No. 3. (15 November 1999), pp. 379-387.
    by N Blomberg, RR Gabdoulline, M Nilges, RC Wade
    posted to electrostatics protein_design protein_sequence protein_structure by barry on 2005-10-10 09:29:59 as ***** along with 2 groups structural_bioinformatics Bioinformatics
  • Electrotactins: a class of adhesion proteins with conserved electrostatic and structural motifs.
    Protein Eng, Vol. 11, No. 6. (June 1998), pp. 415-420.
    by SA Botti, CE Felder, JL Sussman, I Silman
    posted to bioinf_methods electrostatics protein_evolution protein_structure by barry on 2005-10-10 09:22:28 as *** along with 2 groups structural_bioinformatics Bioinformatics
  • Conservation of electrostatic properties within enzyme families and superfamilies.
    Biochemistry, Vol. 42, No. 12. (1 April 2003), pp. 3464-3473.
    by DR Livesay, P Jambeck, A Rojnuckarin, S Subramaniam
    posted to electrostatics protein_design protein_evolution protein_structure by barry on 2005-10-09 01:28:18 as read along with 1 person and 2 groups Einat structural_bioinformatics Bioinformatics
  • Mutational Analysis Demonstrates that Specific Electrostatic Interactions can Play a Key Role in the Denatured State Ensemble of Proteins
    Journal of Molecular Biology, Vol. 353, No. 1. (14 October 2005), pp. 174-185.
    by Jae-Hyun Cho, Daniel P Raleigh
    posted to electrostatics protein_folding by barry on 2005-09-24 00:37:36 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Electrostatic Potential of Aminoacyl-tRNA Synthetase Navigates tRNA on its Pathway to the Binding Site
    Journal of Molecular Biology, Vol. 350, No. 5. (29 July 2005), pp. 866-882.
    by Dmitry Tworowski, Anna V Feldman, Mark G Safro
    posted to electrostatics by barry on 2005-07-07 21:25:25 as ** along with 2 groups structural_bioinformatics Bioinformatics
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