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barrys correlated_mutations [16 articles]

Neue Publikationen in barrys Bibliothek eingetragen unter dem Bezeichner: correlated_mutations. You can also see everyone's correlated_mutations.
  • Protein co-evolution, co-adaptation and interactions
    The EMBO Journal, Vol. aop, No. current. (25 September 2008)
    by Florencio Pazos, Alfonso Valencia
    posted to review protein_protein phylogeny correlated_mutations by barry on 2008-10-02 20:24:17 as ***** along with 1 person and 3 groups sjcockell structural_bioinformatics McCammon Bioinformatics
  • Statistical Coupling Analysis of Aspartic Proteinases Based on Crystal Structures of the Trichoderma reesei Enzyme and Its Complex with Pepstatin A
    Journal of Molecular Biology, Vol. 382, No. 3. (10 October 2008), pp. 763-778.
    by Alessandro S Nascimento, Sandra Krauchenco, Alexander M Golubev, Alla Gustchina, Alexander Wlodawer, Igor Polikarpov
    posted to sca protein_structure protein_sequence correlated_mutations by barry on 2008-09-04 02:24:58 as **
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to correlated_mutations protein_sequence protein_structure by barry on 2008-03-20 00:40:27 as ** along with 7 people and 2 groups neils sobolevnrm mingzhi penpen926 scienbox wilbur friendpine structural_bioinformatics baker-group
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to correlated_mutations review by barry on 2007-11-27 23:34:46 as * along with 3 people and 3 groups zwang sobolevnrm Lombardo_7 structural_bioinformatics Bioinformatics baker-group
  • Allosteric determinants in guanine nucleotide-binding proteins.
    Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450.
    by ME Hatley, SW Lockless, SK Gibson, AG Gilman, R Ranganathan
    posted to sca g_proteins correlated_mutations contacts by barry on 2007-02-05 21:58:17 as read along with 4 people and 5 groups lna Einat marcius caporaso structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • Local complexity of amino acid interactions in a protein core.
    Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116.
    by RK Jain, R Ranganathan
    posted to core_residues core_structure correlated_mutations protein_design protein_structure by barry on 2006-09-29 19:24:22 as ** along with 5 people and 4 groups ana lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Detection and reduction of evolutionary noise in correlated mutation analysis
    Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253.
    by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz
    posted to correlated_mutations sequence_comparison by barry on 2006-01-25 04:24:16 as ** along with 2 people and 2 groups gbart cjeans structural_bioinformatics Bioinformatics
  • On evolutionary conservation of thermodynamic coupling in proteins.
    J Biol Chem, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to contacts correlated_motions correlated_mutations pdz sequence_comparison by barry on 2006-01-25 04:17:37 as **** along with 7 people and 2 groups ana gbart cjeans tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
  • notes Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion
    Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354.
    by Nobuyuki Ota, David A Agard
    posted to allosteric contacts correlated_motions correlated_mutations md_simulation by barry on 2006-01-24 18:24:55 as **** along with 3 people and 2 groups pansapiens lna choonpeng structural_bioinformatics Bioinformatics
  • Prediction of functional specificity determinants from protein sequences using log-likelihood ratios
    Bioinformatics (8 August 2005)
    by J Pei, W Cai, LN Kinch, NV Grishin
    posted to bioinf_methods correlated_mutations protein_sequence by barry on 2005-12-01 04:21:08 as **** along with 2 people and 2 groups ana Einat structural_bioinformatics Bioinformatics
  • Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 994-999.
    by RA Estabrook, J Luo, MM Purdy, V Sharma, P Weakliem, TC Bruice, NO Reich
    posted to correlated_motions correlated_mutations protein_design protein_dynamics protein_evolution by barry on 2005-10-26 00:16:13 as *** along with 4 people and 2 groups ana pansapiens dimka gbart structural_bioinformatics Bioinformatics
  • Natural-like function in artificial WW domains
    Nature, Vol. 437, No. 7058., pp. 579-583.
    by William P Russ, Drew M Lowery, Prashant Mishra, Michael B Yaffe, Rama Ranganathan
    posted to correlated_mutations protein_design protein_sequence protein_structure by barry on 2005-09-22 22:31:34 as *** along with 6 people and 5 groups ana balajis marcius caporaso bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • notes Structural biologyForm and function instructions
    Nature, Vol. 437, No. 7058. (21 September 2005), pp. 486-487.
    by Jeffery W Kelly
    posted to correlated_mutations protein_design by barry on 2005-09-22 22:29:11 as read along with 2 people and 2 groups ana dayjm structural_bioinformatics Bioinformatics
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058., pp. 512-518.
    by Michael Socolich, Steve W Lockless, William P Russ, Heather Lee, Kevin H Gardner, Rama Ranganathan
    posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence protein_structure by barry on 2005-09-22 22:16:31 as ***** along with 14 people and 5 groups ana lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • A method to predict functional residues in proteins.
    Nat Struct Biol, Vol. 2, No. 2. (February 1995), pp. 171-178.
    by G Casari, C Sander, A Valencia
    posted to bioinf_methods correlated_mutations protein_design protein_sequence sequence_comparison by barry on 2005-09-16 23:37:03 as read along with 1 person and 2 groups sriram_s structural_bioinformatics Bioinformatics
  • In silico Discovery of Enzyme-Substrate Specificity-determining Residue Clusters
    Journal of Molecular Biology, Vol. 352, No. 5. (7 October 2005), pp. 1105-1117.
    by Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F Samatova
    posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence sequence_comparison by barry on 2005-09-15 18:06:44 as **** along with 1 person and 2 groups cjeans structural_bioinformatics Bioinformatics
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