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barriots library [273 articles]

Neue Artikel in barriots Bibliothek.
  • A Gene Wiki for Community Annotation of Gene Function
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e175.
    by Jon W Huss, Camilo Orozco, James Goodale, Chunlei Wu, Serge Batalov, Tim J Vickers, Faramarz Valafar, Andrew I Su
    posted to wiki by barriot on 2008-07-16 17:39:20 as ** along with 12 people and 2 groups inesdesantiago thomaskelder GMTurner ChrisEvelo kristina reyez zwang kintoki sjc tharris dullhunk stajich VisionLab Berkeley Mycology
  • A unified approach to false discovery rate estimation
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Korbinian Strimmer
    posted to pvalue fdr correction by barriot on 2008-07-10 06:29:27 as ** along with 4 people shigepong joaocarrico nuin chad_davis
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to overrepresentation go enrichment by barriot on 2008-07-07 09:56:57 as ** along with 2 people dullhunk jyuh
  • Relating Gene Expression Data on Two-Component Systems to Functional Annotations in Escherichia coli
    BMC Bioinformatics, Vol. 9 (25 June 2008), 294.
    by Anne M Denton, Jianfei Wu, Megan K Townsend, Preeti Sule, Birgit M Pruess
    posted to systems 2component by barriot on 2008-06-26 06:09:42 as **
  • Anni 2.0: a multipurpose text-mining tool for the life sciences
    Genome Biology, Vol. 9, No. 6. (2008)
    by Rob Jelier, Martijn Schuemie, Antoine Veldhoven, Lambert Dorssers, Guido Jenster, Jan Kors
    posted to textmining by barriot on 2008-06-13 05:47:22 as ** along with 5 people jyuh Gaetan fpattyn reyez dullhunk
  • Onto-CC: a web server for identifying Gene Ontology conceptual clusters
    Nucl. Acids Res. (10 June 2008), gkn323.
    by R Romero-Zaliz, Del, JP Cobb, I Zwir
    posted to go enrichment combined by barriot on 2008-06-11 06:01:31 as **
  • High-throughput functional annotation and data mining with the Blast2GO suite
    Nucl. Acids Res. (29 April 2008), gkn176.
    by Stefan Gotz, Juan M Garcia-Gomez, Javier Terol, Tim D Williams, Shivashankar H Nagaraj, Maria J Nueda, Montserrat Robles, Manuel Talon, Joaquin Dopazo, Ana Conesa
    posted to sets gene enrichment annotation by barriot on 2008-06-09 06:53:25 as ** along with 2 people sgoetz jyuh
  • The Emerging World of Wikis
    Science, Vol. 320, No. 5881. (6 June 2008), pp. 1289b-1290.
    by James C Hu, Rodolfo Aramayo, Dan Bolser, Tyrrell Conway, Christine G Elsik, Michael Gribskov, Thomas Kelder, Daisuke Kihara, Knight, Alexander R Pico, Deborah A Siegele, Barry L Wanner, Roy D Welch
    posted to wiki by barriot on 2008-06-09 06:38:11 as ** along with 13 people and 3 groups ChrisEvelo rrbarb martindale reyez heatherstaines teachingaging tharris CUL_Akbar davidmihalcik krisl dullhunk AlexanderPico jago Method_Engineering_Services Knowledge_Economy_Reform Global_health_enterprise_architecture
  • Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists.
    Bioinformatics (Oxford, England) (8 May 2008)
    by Michael Hackenberg, Rune Matthiesen
    posted to sets gene enrichment by barriot on 2008-05-26 12:31:05 as ** along with 2 people and 1 group sobolevnrm jyuh baker-group
  • Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1359-1366.
    by Anindya Bhattacharya, Rajat K De
    posted to dcca clustering by barriot on 2008-05-21 05:54:52 as ** along with 2 people jyuh roys
  • A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins.
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Kevin Brick, Elisabetta Pizzi
    posted to plasmodium by barriot on 2008-05-17 10:35:25 as ** along with 2 people pinney Neeperando
  • Conserved co-expression for candidate disease gene prioritization
    BMC Bioinformatics, Vol. 9 (23 April 2008), 208.
    by Martin Oti, Jeroen van Reeuwijk, Martijn A Huynen, Han G Brunner
    posted to prioritization gene expressiondata by barriot on 2008-05-03 08:26:06 as ** along with 1 person jyuh
  • Differences in mtDNA haplogroup distribution among 3 Jewish populations alter susceptibility to T2DM complications.
    BMC Genomics, Vol. 9 (29 April 2008), 198.
    by Jeanette Feder, Ilana Blech, Ofer Ovadia, Shirly Amar, Julio Wainstein, Itamar Raz, Sarah Dadon, Dan E Arking, Benjamin Glaser, Dan Mishmar
    posted to haplogroup by barriot on 2008-04-30 05:54:48 as **
  • A gene sets approach for identifying prognostic gene signatures for outcome prediction
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Seon Y Kim, Yong S Kim
    posted to cancer gene prognosis sets by barriot on 2008-04-17 06:01:12 as ** along with 2 people ptrobajo srp33
  • The human ABC transporter pseudogene family: Evidence for transcription and gene-pseudogene interference
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Armin Piehler, Marit Hellum, Juergen Wenzel, Ellen Kaminski, Kari, Peter Kierulf, Wolfgang Kaminski
    posted to abc transporter by barriot on 2008-04-12 16:04:57 as **
  • Extracting expression modules from perturbational gene expression compendia
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Steven Maere, Patrick Van Dijck, Martin Kuiper
    posted to biclustering expressiondata modules network regulatory by barriot on 2008-04-11 06:02:58 as ** along with 2 people ptrobajo lp2
  • AJHG - Walking the Interactome for Prioritization of Candidate Disease Genes
    American Journal of Human Genetics
    by Sebastian
    posted to gene interactions prioritization by barriot on 2008-04-04 12:39:41 as **
  • Predicting cancer involvement of genes from heterogeneous data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ramon Aragues, Chris Sander, Baldo Oliva
    posted to cancer gene prioritization by barriot on 2008-03-28 05:50:44 as ** along with 7 people and 1 group reyez aheilbut cerami shigepong renatomilani smgomez henryk69 GomezLab
  • Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes
    Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896.
    by Hyunju Lee, Sek W Kong, Peter J Park
    posted to cnv copy expression gene number variable by barriot on 2008-03-27 06:35:39 as ** along with 4 people frohike jcaddy ealloza ptrobajo
  • Adaptive diffusion kernel learning from biological networks for protein function prediction
    BMC Bioinformatics, Vol. 9 (25 March 2008), 162.
    by Liang Sun, Shuiwang Ji, Jieping Ye
    posted to diffusion graph kernel by barriot on 2008-03-26 05:53:26 as ** along with 2 people bootsy ptrobajo
  • Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes
    Genome Biology, Vol. 7 (21 September 2006), R84.
    by Katleen De Preter, Jo Vandesompele, Pierre Heimann, Nurten Yigit, Siv Beckman, Alexander Schramm, Angelika Eggert, Raymond L Stallings, Yves Benoit, Marleen Renard, Anne De Paepe, Genevieve Laureys, Sven Pahlman, Frank Speleman
    posted to neuroblastoma by barriot on 2008-03-04 19:43:09 as **
  • Mining phenotypes for gene function prediction
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Philip Groth, Bertram Weiss, Hans D Pohlenz, Ulf Leser
    posted to function go interactions prediction text by barriot on 2008-03-04 06:47:53 as ** along with 3 people jyuh akastrin mulligen
  • MADIBA: A web server toolkit for biological interpretation of Plasmodium and plant gene clusters
    BMC Genomics, Vol. 9 (28 February 2008), 105.
    by Philip J Law, Clotilde Claudel-Renard, Fourie Joubert, Abraham I Louw, Dave K Berger
    posted to expressiondata go microarray plasmodium by barriot on 2008-02-29 09:49:56 as ** along with 1 person becarmson
  • Integrating multi-attribute similarity networks for robust representation of the protein space
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1585-1592.
    by Camoglu, Orhan, Can, Tolga, Singh, K Ambuj
    posted to bayesian graph interactions random walk by barriot on 2008-02-27 10:01:02 as **
  • Effects of dependence in high-dimensional multiple testing problems
    BMC Bioinformatics, Vol. 9 (25 February 2008), 114.
    by Kyung I Kim, Mark A van de Wiel
    posted to adjustment correction dependence multiple testing by barriot on 2008-02-26 09:14:00 as ** along with 3 people jfr jyuh shigepong
  • Fuzzy association rules for biological data analysis: a case study on yeast
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Francisco Lopez, Armando Blanco, Fernando Garcia, Carlos Cano, Antonio Marin
    posted to association fuzzy rules yeast by barriot on 2008-02-20 06:02:43 as ** along with 5 people and 1 group jyuh grahamc laughcry xili03 yoanjacquemin Bioinformatics
  • NetworkBLAST: Comparative analysis of protein networks.
    Bioinformatics (2 January 2008)
    by Maxim Kalaev, Mike Smoot, Trey Ideker, Roded Sharan
    posted to complex graph network similarity by barriot on 2008-02-13 14:50:20 as **** along with 4 people and 1 group jyuh grahamc laughcry smgomez GomezLab
  • Multiple testing on the directed acyclic graph of gene ontology
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 537-544.
    by Jelle J Goeman, Ulrich Mansmann
    posted to gorelated multiple testing by barriot on 2008-02-13 14:47:32 as **** along with 6 people carlk jyuh jfr eckart_bindewald djkt seemu
  • Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies
    Nucl. Acids Res. (7 February 2008), gkn007.
    by Daniel Shriner, Tesfaye M Baye, Miguel A Padilla, Shiju Zhang, Laura K Vaughan, Ann E Loraine
    posted to gene prioritization by barriot on 2008-02-11 12:06:12 as ** along with 1 person jyuh
  • Identification of gene interactions associated with disease from gene expression data using synergy networks
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by John Watkinson, Xiaodong Wang, Tian Zheng, Dimitris Anastassiou
    posted to disease gene interactions by barriot on 2008-01-31 10:06:26 as ** along with 4 people balicea jfr frohike smgomez
  • GraphCrunch: a tool for large network analyses
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Tijana Milenkovic, Jason Lai, Natasa Przulj
    posted to graph tool by barriot on 2008-01-31 10:05:29 as ** along with 6 people ptrobajo dullhunk jyuh grahamc laughcry maralena
  • VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Hans Kestler, Andre Muller, Johann Kraus, Malte Buchholz, Thomas Gress, Hongfang Liu, David Kane, Barry Zeeberg, John Weinstein
    posted to go gorelated visualization by barriot on 2008-01-30 07:47:01 as ** along with 2 people jyuh heliopais
  • Defining functional distances over Gene Ontology
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Angela D Pozo, Florencio Pazos, Alfonso Valencia
    posted to distance go by barriot on 2008-01-28 05:53:17 as ** along with 5 people and 2 groups carlk barry tny grahamc sobolevnrm Bioinformatics baker-group
  • Biomolecular network querying: a promising approach in systems biology
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Shihua Zhang, Xiang S Zhang, Luonan Chen
    posted to graph network proteininteraction similarity by barriot on 2008-01-23 05:58:51 as **
  • Prioritization of gene regulatory interactions from large-scale modules in yeast
    BMC Bioinformatics, Vol. 9 (22 January 2008), 32.
    by Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron
    posted to expression prioritization regulation by barriot on 2008-01-23 05:36:11 as **
  • An improved method for detecting and delineating genomic regions with altered gene expression in cancer
    Genome Biology, Vol. 9, No. 1. (2008)
    by Bjorn Nilsson, Mikael Johansson, Anders Heyden, Sven Nelander, Thoas Fioretos
    posted to aberration expression pgelike rearrangement by barriot on 2008-01-22 05:24:45 as ** along with 3 people jfr natstreet ptrobajo
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to disease network prioritization proteininteraction by barriot on 2008-01-17 05:32:09 as ** along with 9 people and 2 groups barry balicea frohike neils grahamc aconesa biomcgary mingzhi mclarenv McCammon Bioinformatics
  • Algebraic stability indicators for ranked lists in molecular profiling
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 258-264.
    by Giuseppe Jurman, Stefano Merler, Annalisa Barla, Silvano Paoli, Antonio Galea, Cesare Furlanello
    posted to enrichment integration prioritization by barriot on 2008-01-14 06:46:35 as ** along with 3 people jyuh jfr chad_davis
  • SeqAn - An efficient, generic C++ library for sequence analysis
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andreas Doring, David Weese, Tobias Rausch, Knut Reinert
    posted to analysis library sequence by barriot on 2008-01-10 08:39:56 as ** along with 8 people reyez magusina jyuh chad_davis laughcry ryanraaum nklee mailund
  • Persistence drives gene clustering in bacterial genomes
    BMC Genomics, Vol. 9 (07 January 2008), 4.
    by Gang Fang, Eduardo PC Rocha, Antoine Danchin
    posted to genome organization by barriot on 2008-01-08 07:30:06 as **** along with 2 people saraballouz evodeva
  • Consistent dissection of the protein interaction network by combining global and local metrics
    Genome Biology, Vol. 8 (21 December 2007), R271.
    by Chunlin Wang, Chris Ding, Qiaofeng Yang, Stephen R Holbrook
    posted to clustering enrichment graph network overrepresentation proteininteraction by barriot on 2008-01-03 09:31:20 as ** along with 3 people carlk grahamc cjeans
  • The modular nature of genetic diseases
    Clinical Genetics, Vol. 71, No. 1. (January 2007), pp. 1-11.
    by Oti, , Brunner,
    posted to prioritization review by barriot on 2007-12-21 09:56:54 as ** along with 1 person jyuh
  • Candidate gene identification approach: progress and challenges.
    Int J Biol Sci, Vol. 3, No. 7. (2007), pp. 420-427.
    by M Zhu, S Zhao
    posted to prioritization review by barriot on 2007-12-21 09:55:43 as ** along with 1 person jyuh
  • Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridization
    J Med Genet (14 September 2007), jmg.2007.052191.
    by Kazutoyo Osoegawa, Gery M Vessere, Kagistia H Utami, Maria A Mansilla, Marla K Johnson, Bridget M Riley, Jamie L'Heureux, Rolph Pfundt, Johan Staaf, Walter A van der Vliet, Andrew C Lidral, Eric F Schoenmakers, Ake Borg, Brian C Schutte, Edward J Lammer, Jeffrey C Murray, Pieter J De Jong
    posted to cleft lip palate prioritization by barriot on 2007-12-21 09:54:03 as **
  • In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics
    Mol Cell Proteomics, Vol. 6, No. 7. (1 July 2007), pp. 1257-1273.
    by Jun Adachi, Chanchal Kumar, Yanling Zhang, Matthias Mann
    posted to adipocyte prioritization by barriot on 2007-12-21 09:52:30 as **
  • A strategy to search for common obesity and type 2 diabetes genes
    Trends in Endocrinology & Metabolism, Vol. 18, No. 1. ( 2007), pp. 19-26.
    by Clara C Elbers, Charlotte N Onland-Moret, Lude Franke, Anne G Niehoff, Yvonne T van der Schouw, Cisca Wijmenga
    posted to diabetes prioritization by barriot on 2007-12-21 09:50:48 as **
  • Gene prioritization through genomic data fusion
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 537-544.
    by Stein Aerts, Diether Lambrechts, Sunit Maity, Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau
    posted to gene prioritization by barriot on 2007-12-21 09:48:14 as read along with 6 people and 2 groups srp33 jfr balajis dchughes frohike winterschlaefer G4ID Genetics-of-Gambling
  • SNPtoGO: characterizing SNPs by enriched GO terms
    Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 146-148.
    by Daniel F Schwarz, Oliver Hadicke, Jeanette Erdmann, Andreas Ziegler, Daniel Bayer, Steffen Moller
    posted to enrichment gorelated overrepresentation snp by barriot on 2007-12-20 05:57:57 as ** along with 1 person jyuh
  • Computational Epigenetics.
    Bioinformatics (17 November 2007)
    by Christoph Bock, Thomas Lengauer
    posted to epigenetics review by barriot on 2007-12-20 05:49:22 as ** along with 11 people and 1 group jyuh Thomasah Ema sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs Bioinformatics
  • Yeast two-hybrid interaction partner screening through in vivo Cre-mediated Binary Interaction Tag generation
    Nucl. Acids Res., Vol. 35, No. 21. (18 December 2007), e141.
    by Alex R Hastie, Steven C Pruitt
    posted to proteininteraction y2h by barriot on 2007-12-19 06:06:44 as **
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