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austins library [1053 articles]

Neue Artikel in austins Bibliothek.
  • Self-splicing of a group IIC intron: 5' exon recognition and alternative 5' splicing events implicate the stem-loop motif of a transcriptional terminator.
    Nucleic acids research, Vol. 34, No. 22. (2006), pp. 6461-6471.
    posted to splicing ribozyme groupii by austin on 2008-07-05 00:01:10 as read
  • Regulation of ribozyme activity by engineered protein switch.
    Nucleic acids symposium series (2004), No. 49. (2005), pp. 343-344.
    by T Tanaka, N Kanda, Y Kikuchi
    posted to rnasep ribozyme engineering by austin on 2008-07-05 00:00:07 as read
  • RNA folding: models and perspectives.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 309-316.
    by TR Sosnick, T Pan
  • The structural basis of ribozyme-catalyzed RNA assembly.
    Science, Vol. 315, No. 5818. (16 March 2007), pp. 1549-1553.
    by MP Robertson, WG Scott
    posted to structure rna ribozyme ligase by austin on 2008-07-04 23:59:09 as read along with 1 person jwm
  • Prediction of RNA secondary structure by free energy minimization.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 270-278.
    by DH Mathews, DH Turner
    posted to rna folding by austin on 2008-07-04 23:58:34 as ** along with 1 person onufriev
  • Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2246-2253.
    by DH Mathews
  • Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization.
    RNA, Vol. 10, No. 8. (August 2004), pp. 1178-1190.
    by DH Mathews
  • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.
    Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7287-7292.
    by DH Mathews, MD Disney, JL Childs, SJ Schroeder, M Zuker, DH Turner
  • A method for rapid similarity analysis of RNA secondary structures
    BMC Bioinformatics, Vol. 7 (08 November 2006), 493.
    by Na Liu, Tianming Wang
    posted to rna folding by austin on 2008-07-04 23:57:22 as read along with 1 person dquest
  • How do RNA folding algorithms work?
    Nature Biotechnology, Vol. 22, No. 11., 1457.
    by Sean R Eddy
  • Clustering of RNA Secondary Structures with Application to Messenger RNAs
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 554-571.
    by Ye Ding, Chi Y Chan, Charles E Lawrence
    posted to structure sfold secondary rna by austin on 2008-07-04 23:55:51 as read along with 1 person tardigrade
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
  • Computational design of synthetic gene circuits with composable parts.
    Bioinformatics (Oxford, England) (25 June 2008)
    by M A A Marchisio, J Stelling
    posted to no-tag by austin on 2008-07-04 18:24:54 as ***
  • The guanosine binding site of the Tetrahymena ribozyme.
    Nature, Vol. 342, No. 6248. (23 November 1989), pp. 391-395.
    by F Michel, M Hanna, R Green, DP Bartel, JW Szostak
    posted to no-tag by austin on 2008-07-04 16:41:19 as *****
  • RNA folding during transcription.
    Annual review of biophysics and biomolecular structure, Vol. 35 (2006), pp. 161-175.
    by T Pan, T Sosnick
    posted to transcription rna ribozyme folding by austin on 2008-07-04 14:00:08 as **
  • Ribozyme-mediated revision of RNA and DNA.
    The Journal of clinical investigation, Vol. 112, No. 3. (August 2003), pp. 312-318.
    by MB Long, JP Jones, BA Sullenger, J Byun
    posted to rna ribozyme review dna by austin on 2008-07-04 00:40:12 as read
  • RNA folding causes secondary structure rearrangement.
    Proc Natl Acad Sci U S A, Vol. 95, No. 20. (29 September 1998), pp. 11555-11560.
    by M Wu, I Tinoco
  • Virus Attenuation by Genome-Scale Changes in Codon Pair Bias
    Science, Vol. 320, No. 5884. (27 June 2008), pp. 1784-1787.
    by Robert J Coleman, Dimitris Papamichail, Steven Skiena, Bruce Futcher, Eckard Wimmer, Steffen Mueller
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
  • notes Widespread selection for local RNA secondary structure in coding regions of bacterial genes.
    Genome research, Vol. 13, No. 9. (September 2003), pp. 2042-2051.
    by L Katz, CB Burge
    posted to rna interesting codon bias by austin on 2008-06-29 02:11:23 as read
  • Engineering a ligand-dependent RNA transcriptional activator.
    Chem Biol, Vol. 11, No. 8. (August 2004), pp. 1157-1163.
    by AR Buskirk, A Landrigan, DR Liu
    posted to rna aptamer activator by austin on 2008-06-29 01:58:00 as read along with 2 people mdimmic leelarcombe
  • Expanding the metabolic engineering toolbox: more options to engineer cells.
    Trends Biotechnol, Vol. 25, No. 3. (March 2007), pp. 132-137.
    by KE Tyo, HS Alper, GN Stephanopoulos
    posted to syntheticbiology by austin on 2008-06-29 01:51:38 as read along with 2 people cmmorel dbikard
  • Synthetic biology projects in vitro
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 1-6.
    by Anthony C Forster, George M Church
    posted to syntheticbiology by austin on 2008-06-29 01:36:14 as read along with 1 person Olaf_Ilzins
  • Production of isoprenoid pharmaceuticals by engineered microbes.
    Nat Chem Biol, Vol. 2, No. 12. (December 2006), pp. 674-681.
    by MC Chang, JD Keasling
    posted to syntheticbiology by austin on 2008-06-29 01:35:44 as read along with 1 person dbikard
  • Medium scale integration of molecular logic gates in an automaton.
    Nano letters, Vol. 6, No. 11. (November 2006), pp. 2598-2603.
    posted to syntheticbiology invitro gates deoxyribozyme by austin on 2008-06-29 01:35:01 as read
  • A catalytic beacon sensor for uranium with parts-per-trillion sensitivity and millionfold selectivity.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2056-2061.
    by J Liu, AK Brown, X Meng, DM Cropek, JD Istok, DB Watson, Y Lu
    posted to sensor parts dnazyme by austin on 2008-06-29 01:34:18 as read
  • Effect of glucose or glycerol as the sole carbon source on gene expression from the Salmonella prpBCDE promoter in Escherichia coli.
    Biotechnology progress, Vol. 22, No. 6. (c 2006), pp. 1547-1551.
    by SK Lee, JD Keasling
    posted to syntheticbiology promoter parts inducible by austin on 2008-06-29 01:32:33 as read
  • notes An in vivo selection system for homing endonuclease activity.
    Nucleic acids research, Vol. 30, No. 7. (1 April 2002)
    by M Gruen, K Chang, I Serbanescu, DR Liu
    posted to syntheticbiology parts homingendonuclease by austin on 2008-06-29 01:31:29 as read
  • Reporter proteins for in vivo fluorescence without oxygen
    Nature Biotechnology, Vol. 25, No. 4. (11 March 2007), pp. 443-445.
    by Thomas Drepper, Thorsten Eggert, Franco Circolone, Achim Heck, Ulrich Krauß, Jan-Karl Guterl, Marion Wendorff, Aba Losi, Wolfgang Gärtner, Karl-Erich Jaeger
    posted to syntheticbiology reporter parts by austin on 2008-06-29 01:30:51 as read along with 1 person jyuh
  • Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.
    Nature protocols, Vol. 1, No. 3. (2006), pp. 1637-1652.
    by DA Wright, S Thibodeau-Beganny, JD Sander, RJ Winfrey, AS Hirsh, M Eichtinger, F Fu, MH Porteus, D Dobbs, DF Voytas, JK Joung
    posted to zincfinger syntheticbiology assembly by austin on 2008-06-29 01:29:48 as read
  • Production of the non-ribosomal peptide plipastatin in Bacillus subtilis regulated by three relevant gene blocks assembled in a single movable DNA segment.
    Journal of biotechnology, Vol. 129, No. 4. (10 May 2007), pp. 592-603.
    by K Tsuge, K Matsui, M Itaya
    posted to syntheticbiology dna assembly by austin on 2008-06-29 01:28:57 as read
  • Parallel gene synthesis in a microfluidic device.
    Nucleic acids research, Vol. 35, No. 8. (2007)
    by DS Kong, PA Carr, L Chen, S Zhang, JM Jacobson
    posted to syntheticbiology synthesis microfluidics dna by austin on 2008-06-29 01:28:11 as read
  • Light-powering Escherichia coli with proteorhodopsin.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2408-2412.
    posted to syntheticbiology proteorhodopsin by austin on 2008-06-29 01:27:32 as read
  • Synthetic cooperation in engineered yeast populations.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1877-1882.
    by W Shou, S Ram, JM Vilar
    posted to syntheticbiology by austin on 2008-06-29 01:27:08 as read along with 2 people dbikard fishtank
  • Biology by design: reduction and synthesis of cellular components and behaviour.
    Journal of the Royal Society, Interface / the Royal Society, Vol. 4, No. 15. (22 August 2007), pp. 607-623.
    by P Marguet, F Balagadde, C Tan, L You
    posted to syntheticbiology by austin on 2008-06-29 01:26:39 as read
  • Programming and engineering biological networks.
    Current opinion in structural biology, Vol. 16, No. 4. (August 2006), pp. 551-556.
    by JW Chin
    posted to syntheticbiology by austin on 2008-06-29 01:25:57 as read
  • Ribozyme-mediated induction of apoptosis in human cancer cells by targeted repair of mutant p53 RNA.
    Molecular therapy : the journal of the American Society of Gene Therapy, Vol. 10, No. 2. (August 2004), pp. 365-372.
    by KS Shin, BA Sullenger, SW Lee
    posted to ribozyme repair groupi by austin on 2008-06-29 01:23:56 as read
  • Trans insertion-splicing: ribozyme-catalyzed insertion of targeted sequences into RNAs.
    Biochemistry, Vol. 44, No. 31. (9 August 2005), pp. 10702-10710.
    by AK Johnson, J Sinha, SM Testa
    posted to tis ribozyme groupi by austin on 2008-06-29 01:23:06 as read
  • 5' transcript replacement in vitro catalyzed by a group I intron-derived ribozyme.
    Biochemistry, Vol. 44, No. 21. (31 May 2005), pp. 7796-7804.
    by RC Alexander, DA Baum, SM Testa
    posted to ribozyme groupi by austin on 2008-06-29 01:20:42 as read
  • The 2'-Hydroxyl Group of the Guanosine Nucleophile Donates a Functionally Important Hydrogen Bond in the Tetrahymena Ribozyme Reaction.
    Biochemistry (24 June 2008)
    by James L Hougland, Raghuvir N Sengupta, Qing Dai, Shirshendu K Deb, Joseph A Piccirilli
    posted to tetrahymena splicing groupi biochemistry by austin on 2008-06-28 23:57:19 as read
  • A common periodic table of codons and amino acids.
    Biochemical and biophysical research communications, Vol. 306, No. 2. (27 June 2003), pp. 408-415.
    by JC Biro, B Benyó, C Sansom, A Szlávecz, G Fördös, T Micsik, Z Benyó
    posted to geneticcode codons aminoacids by austin on 2008-06-26 20:22:37 as read
  • Design of highly specific cytotoxins by using trans-splicing ribozymes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 7. (30 March 1999), pp. 3507-3512.
    by BG Ayre, U Köhler, HM Goodman, J Haseloff
    posted to trans-splicing ribozyme groupi by austin on 2008-06-26 20:19:22 as read
  • notes Functional repair of a mutant chloride channel using a trans-splicing ribozyme.
    The Journal of clinical investigation, Vol. 110, No. 12. (December 2002), pp. 1783-1789.
    by CS Rogers, CG Vanoye, BA Sullenger, AL George
    posted to trans-splicing tetrahymena ribozyme groupi efficiency by austin on 2008-06-26 16:23:34 as read
  • Crystal structure of a group I ribozyme domain: principles of RNA packing.
    Science, Vol. 273, No. 5282. (20 September 1996), pp. 1678-1685.
    by JH Cate, AR Gooding, E Podell, K Zhou, BL Golden, CE Kundrot, TR Cech, JA Doudna
    posted to tetrahymena structure groupi crystal by austin on 2008-06-25 23:58:10 as read along with 1 person lillekatt
  • Kinetic Intermediates Trapped by Native Interactions in RNA Folding
    Science, Vol. 279, No. 5358. (20 March 1998), pp. 1943-1946.
    by Daniel K Treiber, Martha S Rook, Patrick P Zarrinkar, James R Williamson
    posted to tetrahymena rna folding by austin on 2008-06-25 22:52:09 as read
  • Folding intermediates of a self-splicing RNA: mispairing of the catalytic core.
    Journal of molecular biology, Vol. 280, No. 4. (24 July 1998), pp. 597-609.
    by J Pan, SA Woodson
    posted to tetrahymena rna ribozyme groupi folding by austin on 2008-06-25 21:57:52 as read
  • Implications of ribozyme kinetics for targeting the cleavage of specific RNA molecules in vivo: more isn't always better.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 88, No. 16. (15 August 1991), pp. 6921-6925.
    posted to tetrahymena specificity ribozyme groupi by austin on 2008-06-25 21:18:58 as read
  • notes Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation
    Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5660-5669.
    posted to sfold rna prediction accessibility by austin on 2008-06-24 12:26:54 as read along with 1 person ilh
  • Modular aptameric sensors.
    Journal of the American Chemical Society, Vol. 126, No. 30. (4 August 2004), pp. 9266-9270.
    posted to malachitegreen aptamer by austin on 2008-06-22 14:13:40 as read
  • Binary malachite green aptamer for fluorescent detection of nucleic acids.
    Journal of the American Chemical Society, Vol. 127, No. 36. (14 September 2005), pp. 12442-12443.
    posted to malachitegreen aptamer by austin on 2008-06-22 14:13:08 as read
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