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aprasads phylogenetics [164 articles]

Neue Publikationen in aprasads Bibliothek eingetragen unter dem Bezeichner: phylogenetics. You can also see everyone's phylogenetics.
  • Phylogenetic incongruence in the Drosophila melanogaster species group.
    Molecular phylogenetics and evolution, Vol. 43, No. 3. (June 2007), pp. 1138-1150.
    by A Wong, JD Jensen, JE Pool, CF Aquadro
    posted to phylogenetics incongruence by aprasad on 2008-06-27 19:23:40 as **
  • A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1054-1066.
    by Bryan Kolaczkowski, Joseph W Thornton
    posted to simulation phylogenetics model evolution by aprasad on 2008-06-26 21:39:09 as **
  • Morphology and Placental Mammal Phylogeny
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503.
    by Mark S Springer, Robert W Meredith, Eduardo Eizirik, Emma Teeling, William J Murphy
    posted to tree phylogenetics morphology mammal by aprasad on 2008-06-24 21:17:43 as **
  • A mobile element based phylogeny of Old World monkeys
    Molecular Phylogenetics and Evolution, Vol. 37, No. 3. (December 2005), pp. 872-880.
    by Jinchuan Xing, Hui Wang, Kyudong Han, David A Ray, Cheney H Huang, Leona G Chemnick, Caro-Beth Stewart, Todd R Disotell, Oliver A Ryder, Mark A Batzer
    posted to tree rare_genomic_characters phylogenetics catarrhini by aprasad on 2008-06-19 22:19:37 as **
  • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy.
    Molecular biology and evolution, Vol. 22, No. 5. (May 2005), pp. 1337-1344.
    by A Rokas, SB Carroll
  • Flying lemurs - the "flying tree shrews"? Molecular cytogenetic evidence for a Scandentia-Dermoptera sister clade
    BMC Biology, Vol. 6 (01 May 2008), 18.
    by Wenhui Nie, Beiyuan Fu, Patricia CM O'Brien, Jinhuan Wang, Weiting Su, Alongklod Tanomtong, Vitaly Volobouev, Malcolm A Ferguson-Smith, Fengtang Yang
    posted to primate phylogenetics cytogenetics by aprasad on 2008-05-28 14:15:04 as **
  • Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e173.
    by Daniel A Pollard, Venky N Iyer, Alan M Moses, Michael B Eisen
  • Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95.
    by Stefanie Hartmann, Todd J Vision
  • Incorporating gaps as phylogenetic characters across eight DNA regions: ramifications for North American Psoraleeae (Leguminosae).
    Molecular phylogenetics and evolution, Vol. 46, No. 2. (February 2008), pp. 532-546.
    by AN Egan, KA Crandall
    posted to review phylogenetics methods indel by aprasad on 2008-05-07 19:35:44 as **
  • Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Datasets.
    Molecular biology and evolution (2 May 2008)
    by Arjun B Prasad, Marc W Allard, Eric D Green
    posted to tree placental phylogenomics phylogenetics nisc mammal atlantogenata by aprasad on 2008-05-07 13:34:54 as **
  • Phylogenetic Mixture Models Can Reduce Node-Density Artifacts
    Systematic Biology, Vol. 57, No. 2. (2008), pp. 286-293.
    by Chris Venditti, Andrew Meade, Mark Pagel
  • Gene conversion and the evolution of euryarchaeal chaperonins: a maximum likelihood-based method for detecting conflicting phylogenetic signals.
    Journal of molecular evolution, Vol. 55, No. 2. (August 2002), pp. 232-245.
    by JM Archibald, AJ Roger
    posted to phylogenetics lrt likelihood congruence by aprasad on 2008-04-26 14:18:59 as **
  • Influence Function for Robust Phylogenetic Reconstructions
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 869-873.
    by Avner Bar-Hen, Mahendra Mariadassou, Marie-Anne Poursat, Philippe Vandenkoornhuyse
    posted to phylogenetics methods likelihood congruence by aprasad on 2008-04-26 13:55:27 as **
  • Sources of Incongruence among Mammalian Mitochondrial Sequences: COII, COIII, and ND6 Genes Are Main Contributors
    Molecular Phylogenetics and Evolution, Vol. 21, No. 1. (October 2001), pp. 43-54.
    by Nikolai A Shevchuk, Marc W Allard
    posted to congruence ild mitochondria phylogenetics by aprasad on 2008-04-16 20:59:23 as **
  • Increasing the Efficiency of Searches for the Maximum Likelihood Tree in a Phylogenetic Analysis of up to 150 Nucleotide Sequences.
    Syst Biol, Vol. 56, No. 6. (December 2007), pp. 988-1010.
    by DA Morrison
    posted to likelihood methods phylogenetics tools by aprasad on 2008-03-29 08:24:22 as ** along with 1 person akifumi
  • Is There a Star Tree Paradox?
    Molecular Biology and Evolution, Vol. 23, No. 10. (15 October 2006), pp. 1819-1823.
    posted to bayesian phylogenetics star_paradox by aprasad on 2008-03-24 18:42:33 as **
  • Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
    Syst Biol, Vol. 56, No. 3. (June 2007), pp. 504-514.
    by L Liu, DK Pearl
  • Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1.
    Sci China C Life Sci, Vol. 50, No. 6. (December 2007), pp. 780-788.
    by X Kong, X Wang, X Gan, J Li, S He
    posted to fish indel phylogenetics tree by aprasad on 2008-03-23 16:07:45 as **
  • From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case.
    Syst Biol, Vol. 56, No. 1. (February 2007), pp. 1-16.
  • Mammalian evolution and biomedicine: new views from phylogeny.
    Biol Rev Camb Philos Soc, Vol. 82, No. 3. (August 2007), pp. 375-392.
    by MS Springer, WJ Murphy
    posted to mammal phylogenetics review by aprasad on 2008-03-08 12:11:14 as **
  • Molecular phylogenetics: state-of-the-art methods for looking into the past.
    Trends Genet, Vol. 17, No. 5. (May 2001), pp. 262-272.
    by S Whelan, P Liò, N Goldman
  • Review of the monotreme fossil record and comparison of palaeontological and molecular data
    Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, Vol. 136, No. 4. (December 2003), pp. 927-942.
    by AM Musser
    posted to fossil monotreme phylogenetics by aprasad on 2008-02-29 14:28:25 as **
  • Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
    BMC Evolutionary Biology, Vol. 7 (28 August 2007), 147.
    by Johann W Waegele, Christoph Mayer
    posted to long_branch_attraction methods phylogenetics signal by aprasad on 2008-02-29 14:03:01 as **
  • Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia
    Zoologica Scripta, Vol. 37, No. 2. (March 2008), pp. 115-127.
    posted to mammal marsupionta phylogenetics root theria by aprasad on 2008-02-29 13:50:05 as **
  • Visualizing Conflicting Evolutionary Hypotheses in Large Collections of Trees: Using Consensus Networks to Study the Origins of Placentals and Hexapods
    Systematic Biology, Vol. 54, No. 1. (February 2005), pp. 66-76.
    by Barbara Holland, Frederic Delsuc, Vincent Moulton
    posted to consensus mammal methods phylogenetics root tree by aprasad on 2008-02-29 04:45:59 as **
  • Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction
    Mol Biol Evol, Vol. 18, No. 2. (1 February 2001), pp. 132-143.
    by Mark S Springer, Ronald W Debry, Christophe Douady, Heather M Amrine, Ole Madsen, Wilfried W de Jong, Michael J Stanhope
    posted to mammal phylogenetics theria tree by aprasad on 2008-02-29 04:39:10 as **
  • A platypus' eye view of the mammalian genome
    Current Opinion in Genetics & Development, Vol. 14, No. 6. (December 2004), pp. 642-649.
    by Frank Grutzner, Jennifer A Graves
    posted to monotreme phylogenetics review theria by aprasad on 2008-02-29 04:34:25 as **
  • The relative performance of indel-coding methods in simulations
    Molecular Phylogenetics and Evolution, Vol. 44, No. 2. (August 2007), pp. 724-740.
    by Mark P Simmons, Kai Muller, Andrew P Norton
    posted to indel methods phylogenetics by aprasad on 2008-02-28 23:09:55 as **
  • The effect of branch lengths on phylogeny: An empirical study using highly conserved orthologs from mammalian genomes
    Molecular Phylogenetics and Evolution, Vol. 45, No. 1. (October 2007), pp. 81-88.
    by Austin L Hughes, Robert Friedman
    posted to mammal phylogenetics phylogenomics tree by aprasad on 2008-02-28 23:07:38 as **
  • Model use in phylogenetics: nine key questions
    Trends in Ecology & Evolution, Vol. 22, No. 2. (February 2007), pp. 87-94.
    by Scot A Kelchner, Michael A Thomas
  • Rocks and clocks: calibrating the Tree of Life using fossils and molecules
    Trends in Ecology & Evolution, Vol. 22, No. 8. (August 2007), pp. 424-431.
    by Philip C Donoghue, Michael J Benton
  • Update on the Phylogenetic Systematics of New World Monkeys: Further DNA Evidence for Placing the Pygmy Marmoset (Cebuella) within the Genus Callithrix
    International Journal of Primatology, Vol. 18, No. 4. (1997), pp. 651-674.
    posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 23:15:32 as **
  • New World monkey phylogeny based on X-linked G6PD DNA sequences
    Molecular Phylogenetics and Evolution, Vol. 27, No. 1. (April 2003), pp. 121-130.
    by Michael E Steiper, Maryellen Ruvolo
    posted to phylogenetics platyrrhini primte tree by aprasad on 2008-02-23 08:37:56 as **
  • Molecular Phylogeny of New World Primates (Platyrrhini) Based on [beta]2-Microglobulin DNA Sequences
    Molecular Phylogenetics and Evolution, Vol. 12, No. 1. (June 1999), pp. 74-82.
    by Flavio C Canavez, Miguel A Moreira, John J Ladasky, Alcides Pissinatti, Peter Parham, Hector N Seuanez
    posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:25:20 as **
  • Can molecular data place each neotropical monkey in its own branch?
    Chromosoma, Vol. 109, No. 8. (23 February 2001), pp. 515-523.
    by Horácio Schneider, Flávio C Canavez, Iracilda Sampaio, Miguel Moreira, Claudia H Tagliaro, Héctor N Seuánez
    posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:18:54 as **
  • Molecular cladistic markers in New World monkey phylogeny (Platyrrhini, Primates)
    Molecular Phylogenetics and Evolution, Vol. 26, No. 3. (March 2003), pp. 490-501.
    by Silke S Singer, Jurgen Schmitz, Claudia Schwiegk, Hans Zischler
    posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:15:23 as **
  • Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates)
    Molecular Phylogenetics and Evolution, Vol. 40, No. 1. (July 2006), pp. 274-280.
    by Juan C Opazo, Derek E Wildman, Tom Prychitko, Robert M Johnson, Morris Goodman
    posted to phylogenetics platyrrhini primate tree by aprasad on 2008-02-23 08:05:16 as **
  • Tracking genome organization in rodents by Zoo-FISH.
    Chromosome Res (11 February 2008)
    by Alexander S Graphodatsky, Fengtang Yang, Gauthier Dobigny, Svetlana A Romanenko, Larisa S Biltueva, Polina L Perelman, Violetta R Beklemisheva, Elena Z Alkalaeva, Natalya A Serdukova, Malcolm A Ferguson-Smith, William J Murphy, Terence J Robinson
    posted to cytogenetics phylogenetics rodent tree by aprasad on 2008-02-14 16:33:23 as **
  • Primate Phylogeny: Morphological vs Molecular Results
    Molecular Phylogenetics and Evolution, Vol. 5, No. 1. (February 1996), pp. 102-154.
    by Jeheskel Shoshani, Colin P Groves, Elwyn L Simons, Gregg F Gunnell
    posted to phylogenetics primate tree by aprasad on 2008-02-11 21:25:11 as **
  • Tracking Alu evolution in New World primates
    BMC Evolutionary Biology, Vol. 5, No. 1. (2005)
    by David Ray, Mark Batzer
    posted to phylogenetics primate sine tree by aprasad on 2008-02-10 18:02:58 as **
  • Paloverde: an OpenGL 3-D phylogeny browser.
    Bioinformatics (24 February 2006)
    by Michael J J Sanderson
  • Analysis and Visualization of Tree Space
    Systematic Biology, Vol. 54, No. 3. (June 2005), pp. 471-482.
    by David Hillis, Tracy Heath, Katherine John
    posted to phylogenetics tools tree_visualization by aprasad on 2008-02-06 22:49:40 as **
  • Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant.
    Syst Biol, Vol. 48, No. 1. (March 1999), pp. 31-53.
    by PJ Waddell, Y Cao, J Hauf, M Hasegawa
    posted to mammal phylogenetics tree by aprasad on 2008-01-31 23:54:58 as **
  • Parallel adaptive radiations in two major clades of placental mammals.
    Nature, Vol. 409, No. 6820. (1 February 2001), pp. 610-614.
    by O Madsen, M Scally, CJ Douady, DJ Kao, RW DeBry, R Adkins, HM Amrine, MJ Stanhope, WW de Jong, MS Springer
    posted to mammal phylogenetics tree by aprasad on 2008-01-26 18:23:58 as **
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
  • OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics
    BMC Evolutionary Biology, Vol. 7 (30 November 2007), 241.
    by Vincent Ranwez, Frederic Delsuc, Sylvie Ranwez, Khalid Belkir, Marie-Ka Tilak, Emmanuel JP Douzery
  • A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods.
    Mol Biol Evol, Vol. 22, No. 2. (February 2005), pp. 251-264.
    posted to mammal mitochondria phylogenetics tree by aprasad on 2008-01-24 23:08:22 as **
  • PHYLOGENETICS: Enhanced: Which Mammalian Supertree to Bark Up?
    Science, Vol. 291, No. 5509. (2 March 2001), pp. 1709-1711.
    by Mark S Springer, Wilfried W de Jong
    posted to boreoeutheria mammal phylogenetics review tree by aprasad on 2008-01-24 16:35:17 as **
  • Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data.
    Genome Inform, Vol. 13 (2002), pp. 82-92.
    by PJ Waddell, H Kishino, R Ota
    posted to bayesian bootstrap consensus methods phylogenetics by aprasad on 2008-01-17 22:48:55 as **
  • RadCon: phylogenetic tree comparison and consensus
    Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 486-487.
    by Joseph L Thorley, Roderic D Page
    posted to consensus phylogenetics tools tree by aprasad on 2008-01-16 20:37:13 as ** along with 1 person tny
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