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aprasads mutation_rate [38 articles]

Neue Publikationen in aprasads Bibliothek eingetragen unter dem Bezeichner: mutation_rate. You can also see everyone's mutation_rate.
  • Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
    PLoS Genet, Vol. 4, No. 5. (30 May 2008), e1000083.
    by Adam R Boyko, Scott H Williamson, Amit R Indap, Jeremiah D Degenhardt, Ryan D Hernandez, Kirk E Lohmueller, Mark D Adams, Steffen Schmidt, John J Sninsky, Shamil R Sunyaev, Thomas J White, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
    posted to selection population_genetics mutation_rate fitness aa by aprasad on 2008-06-30 19:27:26 as **
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
    posted to mutation_rate indel human_genome evolution drosophila by aprasad on 2008-05-19 15:38:57 as ** along with 5 people brant djkt lusk biomcgary gjuggler
  • The impact of recombination on nucleotide substitutions in the human genome.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by L Duret, PF Arndt
    posted to recombination mutation_rate isochore human_genome gc by aprasad on 2008-05-15 15:46:09 as ** along with 2 people balicea gjuggler
  • Understanding Neutral Genomic Molecular Clocks
    Evolutionary Biology, Vol. 34, No. 3. (22 December 2007), pp. 144-151.
    by Soojin Yi
    posted to review neutral mutation_rate molecular_clock by aprasad on 2008-04-15 15:10:43 as **
  • Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130.
    by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier
    posted to mitochondria mutation_rate by aprasad on 2008-03-31 16:52:04 as ** along with 2 people smbe2008 renatomilani
  • Ancestral Alleles and Population Origins: Inferences Depend on Mutation Rate
    Molecular Biology and Evolution, Vol. 24, No. 4. (April 2007), pp. 990-997.
    by Alan R Rogers, Stephen Wooding, Chad D Huff, Mark A Batzer, Lynn B Jorde
    posted to human mutation_rate population_genetics by aprasad on 2008-01-16 20:41:37 as ** along with 1 person ryanraaum
  • A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e176.
    by Erika M Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D Makova
    posted to chimp human indel mutation mutation_rate recombination replication by aprasad on 2007-12-11 19:53:20 as ** along with 2 people and 1 group djkt cisevol cis-regulatory-evolution
  • The majority of recent short DNA insertions in the human genome are tandem duplications.
    Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1190-1197.
    by PW Messer, PF Arndt
    posted to human_genome indel mutation mutation_rate by aprasad on 2007-09-17 18:43:38 as ** along with 2 people PetrovLab dchughes
  • Indel-Based Evolutionary Distance and Mouse-Human Divergence
    Genome Res., Vol. 14, No. 8. (1 August 2004), pp. 1610-1616.
    by Aleksey Y Ogurtsov, Shamil Sunyaev, Alexey S Kondrashov
    posted to genetic_distance human indel mouse mutation_rate by aprasad on 2007-09-13 22:04:20 as **
  • Distribution of indel lengths
    Proteins: Structure, Function, and Genetics, Vol. 45, No. 1. (2001), pp. 102-104.
    by Bin Qian, Richard A Goldstein
    posted to coding indel mutation_rate by aprasad on 2007-09-13 22:01:58 as **
  • Patterns and rates of indel evolution in processed pseudogenes from humans and murids
    Gene, Vol. 205, No. 1-2. (31 December 1997), pp. 191-202.
    by Ron Ophir, Dan Graur
    posted to human indel mouse mutation mutation_rate by aprasad on 2007-09-13 22:00:02 as **
  • Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
    PLoS Comput Biol, Vol. 2, No. 1. (13 January 2006)
    by Gerton Lunter, Chris P P Ponting, Jotun Hein
    posted to indel methods mutation_rate neutral selection by aprasad on 2007-09-13 20:48:39 as ** along with 8 people and 2 groups eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas Stew cisevol mailund EisenLab cis-regulatory-evolution
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
    posted to cns mutation_rate ncrna non-coding selection by aprasad on 2007-09-13 20:01:33 as ** along with 5 people and 4 groups alexg dchughes djkt Stew elfar Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
    Genome Biology, Vol. 8 (04 September 2007), R180.
    by Taane G Clark, Toby Andrew, Gregory M Cooper, Elliot H Marguiles, James C Mullikin, David J Balding
    posted to encode indel mutation_rate regulatory by aprasad on 2007-09-12 22:35:57 as *** along with 2 people caseybrown ryanraaum
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to human_genome mutation_rate selection ultraconserved by aprasad on 2007-09-04 21:55:25 as ** along with 8 people and 1 group balicea djkt lp2 cabbagezs cisevol Minty fpattyn gjuggler cis-regulatory-evolution
  • Using evolutionary Expectation Maximization to estimate indel rates.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300.
    by I Holmes
    posted to evolution indel methods mutation_rate by aprasad on 2007-09-02 13:29:54 as ** along with 1 person nirfriedman
  • Divergence of conserved non-coding sequences: rate estimates and relative rate tests.
    Mol Biol Evol, Vol. 21, No. 11. (November 2004), pp. 2116-2121.
    by GP Wagner, C Fried, SJ Prohaska, PF Stadler
    posted to cns genome_evolution methods mutation_rate by aprasad on 2007-08-28 13:45:31 as **
  • Fixation biases affecting human SNPs
    Trends in Genetics, Vol. 20, No. 3. (March 2004), pp. 122-126.
    by Matthew T Webster, Nick G Smith
    posted to gc isochore mammal mutation_rate by aprasad on 2007-08-09 00:53:56 as **
  • Distinct Changes of Genomic Biases in Nucleotide Substitution at the Time of Mammalian Radiation
    Mol Biol Evol, Vol. 20, No. 11. (1 November 2003), pp. 1887-1896.
    by Peter F Arndt, Dmitri A Petrov, Terence Hwa
    posted to gc isochore mammal mutation_rate by aprasad on 2007-08-09 00:52:54 as **
  • Estimation of DNA Sequence Context-dependent Mutation Rates Using Primate Genomic Sequences.
    J Mol Evol (4 August 2007)
    by Wei Zhang, Gerard G Bouffard, Susan S Wallace, Jeffrey P Bond,
    posted to human mutation_rate nisc by aprasad on 2007-08-08 14:38:58 as **
  • Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Lunter
    posted to evolution human indel mouse mutation_rate whole_genome by aprasad on 2007-08-07 22:22:46 as ** along with 3 people and 1 group AaronDarling mailund elfar Bioinformatics
  • Insertion-deletion biases and the evolution of genome size.
    Gene, Vol. 324 (7 January 2004), pp. 15-34.
    by TR Gregory
    posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:46:53 as ** along with 1 person brant
  • Mutational equilibrium model of genome size evolution.
    Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544.
    by DA Petrov
    posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:45:44 as ** along with 3 people and 1 group operon dpollard timflutre EisenLab
  • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times.
    Mol Biol Evol, Vol. 22, No. 7. (July 2005), pp. 1561-1568.
    by SY Ho, MJ Phillips, A Cooper, AJ Drummond
    posted to evolution mutation_rate selection time by aprasad on 2007-03-03 18:11:50 as **
  • Rate of Evolution in Brain-Expressed Genes in Humans and Other Primates.
    PLoS Biol, Vol. 5, No. 2. (26 December 2006)
    by Hurng-Yi Y Wang, Huan-Chieh C Chien, Naoki Osada, Katsuyuki Hashimoto, Sumio Sugano, Takashi Gojobori, Chen-Kung K Chou, Shih-Feng F Tsai, Chung-I I Wu, C-K James K Shen
    posted to mutation_rate human_genome evolution by aprasad on 2007-01-30 18:43:57 as ** along with 1 person Iden-J_GluR
  • Intron length and accelerated 3' gene evolution
    Genomics, Vol. 88, No. 6. (December 2006), pp. 682-689.
    by Clara S Tang, Yong Z Zhao, David K Smith, Richard J Epstein
    posted to mutation_rate mutation genome_evolution by aprasad on 2007-01-17 21:33:23 as **
  • Bats, clocks, and rocks: diversification patterns in Chiroptera.
    Evolution Int J Org Evolution, Vol. 59, No. 10. (October 2005), pp. 2243-2255.
    by KE Jones, OR Bininda-Emonds, JL Gittleman
    posted to bat evolution mutation_rate by aprasad on 2006-10-18 23:04:06 as **
  • Heterotachy in mammalian promoter evolution.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by MS Taylor, C Kai, J Kawai, P Carninci, Y Hayashizaki, CA Semple
    posted to evolution indel mammal mutation_rate promoter regulatory whole_genome by aprasad on 2006-06-27 13:35:17 as ** along with 4 people and 1 group kentsis olympos cisevol gjuggler cis-regulatory-evolution
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to cns comparative_genomics conservation evolution genome_evolution mutation_rate phastcons by aprasad on 2005-12-02 22:15:13 as ** along with 14 people and 2 groups pradiptaray bpb balajis eckart_bindewald indigoviolet brant adepace djkt olympos sujaikumar Stew cisevol dmc elfar EisenLab cis-regulatory-evolution
  • Darwin In the Genome: Molecular Strategies in Biological Evolution
    (09 October 2002)
    by Lynn Caporale
    posted to evolution mutation mutation_rate by aprasad on 2005-12-02 22:13:54 as **
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to coding evolution genome_evolution mutation_rate selection by aprasad on 2005-10-31 21:12:42 as ***** along with 15 people and 5 groups shoshin stevanspringer operon jwortman dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Adaptive evolution of non-coding DNA in Drosophila
    Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152.
    by Peter Andolfatto
    posted to coding genome genome_evolution human_genome mutation mutation_rate by aprasad on 2005-10-25 19:38:13 as ** along with 12 people and 4 groups pradiptaray stevanspringer bpb jmeppley balicea jimmithy emilyhare cdawson adepace Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
  • Restructuring the genome in response to adaptive challenge: McClintock's bold conjecture revisited.
    Cold Spring Harb Symp Quant Biol, Vol. 69 (2004), pp. 349-354.
    by RA Jorgensen
    posted to genome_evolution mcclintock mutation_rate recombination by aprasad on 2005-10-25 19:00:55 as **
  • Why do human diversity levels vary at a megabase scale?
    Genome Res, Vol. 15, No. 9. (September 2005), pp. 1222-1231.
    by I Hellmann, K Prüfer, H Ji, MC Zody, S Pääbo, SE Ptak
    posted to analysis chimp evolution human_genome jc mutation mutation_rate recombination by aprasad on 2005-10-25 16:43:19 as ***
  • Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13526-13531.
    by Y Xing, C Lee
    posted to coding evolution mutation mutation_rate splicing by aprasad on 2005-10-25 16:26:12 as **** along with 3 people and 3 groups radek penka bsmagic Bioinformatics Nie bioinplant
  • Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.
    Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348.
    by Z Zhang, M Gerstein
    posted to evolution genome_evolution genomics indel mutation_rate by aprasad on 2005-09-15 21:42:56 as **
  • A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Gerald J Wyckoff, Christine M Malcom, Eric J Vallender, Bruce T Lahn
    posted to evolution mutation_rate by aprasad on 2005-09-07 23:43:12 as ** along with 5 people and 1 group shoshin bjorns JAShapiro balajis penka Nie
  • Size of the protein-coding genome and rate of molecular evolution.
    J Hum Genet, Vol. 50, No. 5. (2005), pp. 217-229.
    by ZA Rajic, GM Jankovic, A Vidovic, NM Milic, D Skoric, M Pavlovic, V Lazarevic
    posted to genome_evolution genome_size mutation_rate by aprasad on 2005-08-29 16:01:11 as *** along with 1 person and 1 group penka Nie
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