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aprasads indel [43 articles]

Neue Publikationen in aprasads Bibliothek eingetragen unter dem Bezeichner: indel. You can also see everyone's indel.
  • Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
    Nature (20 July 2008)
    by Dacheng Tian, Qiang Wang, Pengfei Zhang, Hitoshi Araki, Sihai Yang, Martin Kreitman, Thomas Nagylaki, Richard Hudson, Joy Bergelson, Jian Q Chen
    posted to substitution_rate mutation_rate mutation indel by aprasad on 2008-10-27 00:48:56 as ** along with 7 people and 1 group dakelley zwang psique djkt caseybrown bpcusack gjuggler parkinson's disease references
  • Probabilistic Phylogenetic Inference with Insertions and Deletions
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172.
    by Elena Rivas, Sean R Eddy
    posted to phylogenetics methods indel by aprasad on 2008-09-22 20:39:31 as ** along with 9 people and 1 group treangen pradiptaray zwang nuin timflutre druvus djkt gjuggler emptyhb iSEEM
  • Evolution of the SEC1 gene in New World monkey lineages (Primates, Platyrrhini).
    Genetics and molecular research : GMR, Vol. 7, No. 3. (2008), pp. 663-678.
    by BN Borges, TS Paiva, ML Harada
    posted to single_gene platyrrhini phylogenetics indel by aprasad on 2008-09-02 16:48:19 as **
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to alignment indel methods by aprasad on 2008-06-23 19:05:48 as ** along with 23 people and 3 groups pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
    posted to drosophila evolution human_genome indel mutation_rate by aprasad on 2008-05-19 15:38:57 as ** along with 6 people bpcusack djkt lusk biomcgary gjuggler brant
  • Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 95.
    by Stefanie Hartmann, Todd J Vision
    posted to alignment est indel phylogenetics phylogenomics by aprasad on 2008-05-09 17:56:28 as ** along with 4 people and 1 group natstreet druvus stajich Patola Berkeley Mycology
  • Incorporating gaps as phylogenetic characters across eight DNA regions: ramifications for North American Psoraleeae (Leguminosae).
    Molecular phylogenetics and evolution, Vol. 46, No. 2. (February 2008), pp. 532-546.
    by AN Egan, KA Crandall
    posted to indel methods phylogenetics review by aprasad on 2008-05-07 19:35:44 as **
  • A phylogenetic analysis of indel dynamics in the cotton genus.
    Molecular biology and evolution (9 April 2008)
    by Corrinne EE Grover, Yeisoo Yu, Rod AA Wing, Andrew HH Paterson, Jonathan FF Wendel
    posted to evolution genome_size genomics indel plant by aprasad on 2008-04-13 03:44:11 as ** along with 1 person druvus
  • Phylogenetic relationships of Cyprinidae (Teleostei: Cypriniformes) inferred from the partial S6K1 gene sequences and implication of indel sites in intron 1.
    Sci China C Life Sci, Vol. 50, No. 6. (December 2007), pp. 780-788.
    by X Kong, X Wang, X Gan, J Li, S He
    posted to fish indel phylogenetics tree by aprasad on 2008-03-23 16:07:45 as **
  • The relative performance of indel-coding methods in simulations
    Molecular Phylogenetics and Evolution, Vol. 44, No. 2. (August 2007), pp. 724-740.
    by Mark P Simmons, Kai Muller, Andrew P Norton
    posted to indel methods phylogenetics by aprasad on 2008-02-28 23:09:55 as ** along with 1 person druvus
  • A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e176.
    by Erika M Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D Makova
    posted to chimp human indel mutation mutation_rate recombination replication by aprasad on 2007-12-11 19:53:20 as ** along with 3 people and 1 group Iden-J_GluR djkt cisevol cis-regulatory-evolution
  • Biased distributions and decay of LINEs in the chicken genome
    Genetics (18 October 2007), genetics.106.061861.
    by Gyorgy Abrusan, Hans J Krambeck, Thomas Junier, Joti Giordano, Peter E Warburton
    posted to chicken genome_evolution indel line mutation repeats by aprasad on 2007-12-11 15:28:25 as ** along with 1 person dchughes
  • The majority of recent short DNA insertions in the human genome are tandem duplications.
    Mol Biol Evol, Vol. 24, No. 5. (May 2007), pp. 1190-1197.
    by PW Messer, PF Arndt
    posted to human_genome indel mutation mutation_rate by aprasad on 2007-09-17 18:43:38 as ** along with 2 people dchughes PetrovLab
  • INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events.
    Nucleic Acids Res (21 May 2007)
    by Feng, Chueng, Trees
    posted to indel methods tools by aprasad on 2007-09-13 22:20:10 as ** along with 5 people and 1 group natstreet druvus guhjy dpollard lilou EisenLab
  • Indel-Based Evolutionary Distance and Mouse-Human Divergence
    Genome Res., Vol. 14, No. 8. (1 August 2004), pp. 1610-1616.
    by Aleksey Y Ogurtsov, Shamil Sunyaev, Alexey S Kondrashov
    posted to genetic_distance human indel mouse mutation_rate by aprasad on 2007-09-13 22:04:20 as ** along with 1 person emptyhb
  • Distribution of indel lengths
    Proteins: Structure, Function, and Genetics, Vol. 45, No. 1. (2001), pp. 102-104.
    by Bin Qian, Richard A Goldstein
    posted to coding indel mutation_rate by aprasad on 2007-09-13 22:01:58 as **
  • Patterns and rates of indel evolution in processed pseudogenes from humans and murids
    Gene, Vol. 205, No. 1-2. (31 December 1997), pp. 191-202.
    by Ron Ophir, Dan Graur
    posted to human indel mouse mutation mutation_rate by aprasad on 2007-09-13 22:00:02 as **
  • Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model.
    PLoS Comput Biol, Vol. 2, No. 1. (13 January 2006)
    by Gerton Lunter, Chris PP Ponting, Jotun Hein
    posted to indel methods mutation_rate neutral selection by aprasad on 2007-09-13 20:48:39 as ** along with 10 people and 2 groups nklee eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
  • Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
    Genome Biology, Vol. 8 (04 September 2007), R180.
    by Taane G Clark, Toby Andrew, Gregory M Cooper, Elliot H Marguiles, James C Mullikin, David J Balding
    posted to encode indel mutation_rate regulatory by aprasad on 2007-09-12 22:35:57 as *** along with 3 people and 1 group cisevol ryanraaum caseybrown cis-regulatory-evolution
  • Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 289-297.
    by Jaebum Kim, Saurabh Sinha
    posted to alignment indel tools by aprasad on 2007-09-02 13:38:06 as ** along with 4 people and 1 group timflutre gjuggler druvus indigoviolet EisenLab
  • Using evolutionary Expectation Maximization to estimate indel rates.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300.
    by I Holmes
    posted to evolution indel methods mutation_rate by aprasad on 2007-09-02 13:29:54 as ** along with 2 people druvus nirfriedman
  • Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences
    Journal of Theoretical Biology, Vol. 244, No. 4. (21 February 2007), pp. 621-630.
    by Carole Knibbe, Olivier Mazet, Fabien Chaudier, Jean M Fayard, Guillaume Beslon
    posted to evolution genome_size indel mutation selection by aprasad on 2007-08-28 13:43:46 as ** along with 1 person timflutre
  • Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Lunter
    posted to evolution human indel mouse mutation_rate whole_genome by aprasad on 2007-08-07 22:22:46 as ** along with 4 people and 1 group treangen AaronDarling mailund elfar Bioinformatics
  • Insertion-deletion biases and the evolution of genome size.
    Gene, Vol. 324 (7 January 2004), pp. 15-34.
    by TR Gregory
    posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:46:53 as ** along with 1 person brant
  • Mutational equilibrium model of genome size evolution.
    Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544.
    by DA Petrov
    posted to genome_size indel mutation_rate by aprasad on 2007-08-03 16:45:44 as ** along with 3 people and 1 group operon dpollard timflutre EisenLab
  • Exact and heuristic algorithms for the Indel Maximum Likelihood Problem.
    J Comput Biol, Vol. 14, No. 4. (May 2007), pp. 446-461.
    by AB Diallo, V Makarenkov, M Blanchette
    posted to algorithm evolution indel methods model phylogenetics by aprasad on 2007-07-21 21:34:52 as ** along with 2 people timflutre gjuggler
  • Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree.
    Mol Biol Evol, Vol. 21, No. 12. (December 2004), pp. 2299-2309.
    by Pecon J Slattery, Pearks AJ Wilkerson, WJ Murphy, SJ O'Brien
    posted to homoplasy indel repeat transposon by aprasad on 2007-07-12 21:01:59 as **
  • Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
    Genome Res., Vol. 15, No. 9. (1 September 2005), pp. 1243-1249.
    by Louie N van de Lagemaat, Liane Gagnier, Patrik Medstrand, Dixie L Mager
    posted to deletion homoplasy indel repeat transposon by aprasad on 2007-07-12 20:57:37 as **
  • Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.
    Mamm Genome, Vol. 16, No. 9. (September 2005), pp. 651-660.
    by L Yu, YP Zhang
    posted to homoplasy indel repeat transposon by aprasad on 2007-07-12 20:55:25 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics
    Molecular Phylogenetics and Evolution, Vol. 42, No. 3. (March 2007), pp. 827-837.
    by Conrad A Matthee, Geeta Eick, Sandi W Munro, Claudine Montgelard, Amanda T Pardini, Terence J Robinson
    posted to tree phylogenetics mammal indel_rate indel genome_size by aprasad on 2007-06-21 20:45:23 as ** along with 1 person lilou
  • Incorporating Indel Information into Phylogeny Estimation for Rapidly Emerging Pathogens
    BMC Evolutionary Biology, Vol. 7 (14 March 2007), 40.
    by Benjamin D Redelings, Marc A Suchard
    posted to alignment bayesian indel methods phylogenetics by aprasad on 2007-05-14 01:38:56 as ** along with 4 people and 1 group druvus operon dpollard stajich EisenLab
  • Using genomic data to unravel the root of the placental mammal phylogeny.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 413-421.
    by WJ Murphy, TH Pringle, TA Crider, MS Springer, W Miller
    posted to indel mammal phylogenomics rare_genomic_characters root_eutheria transposon tree by aprasad on 2007-05-02 14:40:43 as read along with 1 person maximilianh
  • Intron Length Evolution in Drosophila.
    Mol Biol Evol (21 August 2006)
    by Daven CC Presgraves
    posted to indel genome_size genome_evolution by aprasad on 2007-01-22 16:22:57 as ** along with 5 people and 1 group druvus JAShapiro indigoviolet dpollard lilou EisenLab
  • Pattern and Rate of Indel Evolution Inferred from Whole Chloroplast Intergenic Regions in Sugarcane, Maize and Rice.
    DNA Res (16 November 2006)
    by Kyoko Yamane, Kentaro Yano, Taihachi Kawahara
    posted to evolution indel plants by aprasad on 2006-11-21 14:00:52 as **
  • Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.
    J Mol Evol, Vol. 63, No. 5. (November 2006), pp. 682-690.
    by A Wetterbom, M Sevov, L Cavelier, TF Bergström
    posted to chimp evolution human_genome indel primate by aprasad on 2006-11-15 15:34:16 as **
  • The Platypus Is in Its Place: Nuclear Genes and Indels Confirm the Sister Group Relation of Monotremes and Therians
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 587-597.
    by Teun van Rheede, Trijntje Bastiaans, David N Boone, Blair S Hedges, Wilfried W de Jong, Ole Madsen
    posted to indel monotreme phylogenetics rare_genomic_characters root theria tree by aprasad on 2006-10-26 22:04:13 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Incorporating information from length-mutational events into phylogenetic analysis
    Molecular Phylogenetics and Evolution, Vol. 38, No. 3. (March 2006), pp. 667-676.
    by Kai Muller
    posted to indel phylogenetics tools by aprasad on 2006-08-25 14:32:21 as ** along with 2 people and 1 group druvus cmm FAB-lab
  • Heterotachy in mammalian promoter evolution.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by MS Taylor, C Kai, J Kawai, P Carninci, Y Hayashizaki, CA Semple
    posted to evolution indel mammal mutation_rate promoter regulatory whole_genome by aprasad on 2006-06-27 13:35:17 as ** along with 6 people and 1 group djkt bpcusack kentsis olympos cisevol gjuggler cis-regulatory-evolution
  • Large-scale survey for potentially targetable indels in bacterial and protozoan proteins.
    Proteins (28 November 2005)
    by Artem Cherkasov, Shang, Devki Nandan, Neil EE Reiner
    posted to genome indel by aprasad on 2005-12-07 20:52:52 as ** along with 2 people and 2 groups ana martainn structural_bioinformatics Bioinformatics
  • Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.
    Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348.
    by Z Zhang, M Gerstein
    posted to evolution genome_evolution genomics indel mutation_rate by aprasad on 2005-09-15 21:42:56 as **
  • Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.
    Genome Res, Vol. 14, No. 4. (April 2004), pp. 555-566.
    by MS Taylor, CP Ponting, RR Copley
    posted to coding evolution indel by aprasad on 2005-09-15 21:38:20 as ** along with 2 people and 3 groups ana gjuggler structural_bioinformatics Bioinformatics Nie
  • Incongruent patterns of local and global genome size evolution in cotton.
    Genome Res, Vol. 14, No. 8. (August 2004), pp. 1474-1482.
    by CE Grover, H Kim, RA Wing, AH Paterson, JF Wendel
    posted to evolution genome_size indel by aprasad on 2005-09-15 21:31:29 as **
  • What tangled web: barriers to rampant horizontal gene transfer.
    Bioessays, Vol. 27, No. 7. (July 2005), pp. 741-747.
    by CG Kurland
    posted to evolution genome_evolution genome_size horizontal_gene_transfer indel review by aprasad on 2005-08-18 20:01:41 as read along with 1 person rklancer
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