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aprasads genome_evolution [49 articles]

Neue Publikationen in aprasads Bibliothek eingetragen unter dem Bezeichner: genome_evolution. You can also see everyone's genome_evolution.
  • Reduced purifying selection prevails over positive selection in human copy number variant evolution.
    Genome research (7 August 2008)
    by Duc, Caleb PP Webber, Jayne H Kwa, Rolph Pfundt, Joris Veltman, Chris PP Ponting
    posted to cnv evolution genome genome_evolution genomics human selection by aprasad on 2008-08-19 22:52:06 as ** along with 1 person bpcusack
  • Reduced Number of Ribosomal Sites in Bats: Evidence for a Mechanism to Contain Genome Size
    Journal of Mammalogy, Vol. 73, No. 4. (1992), pp. 847-858.
    by Robert J Baker, Mary Maltbie, James G Owen, Meredith J Hamilton, Robert D Bradley
    posted to bat flying_dna genome_evolution genome_size by aprasad on 2008-07-28 18:57:09 as **
  • Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies
    BMC Evolutionary Biology, Vol. 7 (24 October 2007), 199.
    by Aurora R Herrera, Terence J Robinson
    posted to afrotheria cytogenetics genome_evolution by aprasad on 2008-02-10 18:00:51 as **
  • Biased distributions and decay of LINEs in the chicken genome
    Genetics (18 October 2007), genetics.106.061861.
    by Gyorgy Abrusan, Hans J Krambeck, Thomas Junier, Joti Giordano, Peter E Warburton
    posted to chicken genome_evolution indel line mutation repeats by aprasad on 2007-12-11 15:28:25 as ** along with 1 person dchughes
  • A recurrent inversion on the eutherian X chromosome
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18571-18576.
    by Mario Caceres, National, Robert T Sullivan, James W Thomas
    posted to genome_evolution nisc rearrangement by aprasad on 2007-12-11 14:44:13 as **
  • Divergence of conserved non-coding sequences: rate estimates and relative rate tests.
    Mol Biol Evol, Vol. 21, No. 11. (November 2004), pp. 2116-2121.
    by GP Wagner, C Fried, SJ Prohaska, PF Stadler
    posted to cns genome_evolution methods mutation_rate by aprasad on 2007-08-28 13:45:31 as **
  • A Long-Term Evolutionary Pressure on the Amount of Non-Coding DNA.
    Mol Biol Evol (19 August 2007)
    by Carole Knibbe, Antoine Coulon, Olivier Mazet, Jean, Guillaume Beslon
    posted to evolution genome_evolution genome_size mutation selection by aprasad on 2007-08-28 13:42:48 as ** along with 5 people and 2 groups operon bpb pradiptaray cisevol coldmeadow cis-regulatory-evolution BergmanLab
  • Opposite Evolutionary Effects between Different Alternative Splicing Patterns
    Mol Biol Evol, Vol. 24, No. 7. (1 July 2007), pp. 1443-1446.
    by Feng C Chen, Shu M Chaw, Yun H Tzeng, Sheng S Wang, Trees J Chuang
    posted to coding evolution genome_evolution splicing whole_genome by aprasad on 2007-07-24 17:22:39 as **
  • Is mammalian chromosomal evolution driven by regions of genome fragility?
    Genome Biology, Vol. 7 (08 December 2006), R115.
    by Aurora R Herrera, Jose Castresana, Terence J Robinson
    posted to breakpoints genome_evolution tandem_duplications by aprasad on 2007-04-17 15:32:37 as ** along with 1 person and 1 group Ayest Bioinformatics
  • The mode and tempo of genome size evolution in eukaryotes.
    Genome Res (9 April 2007)
    by Matthew JJ Oliver, Dmitri Petrov, David Ackerly, Paul Falkowski, Oscar MM Schofield
    posted to genome_evolution genome_size by aprasad on 2007-04-16 15:47:24 as **** along with 5 people and 3 groups jbsaltz dpollard dchughes lilou diamantis EisenLab G4ID Genetics-of-Gambling
  • Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss.
    Mol Syst Biol, Vol. 3 (2007)
    by J Ihmels, SR Collins, M Schuldiner, NJ Krogan, JS Weissman
    posted to coding duplication genome_evolution by aprasad on 2007-04-14 20:07:54 as ** along with 2 people lusk bpcusack
  • Bats with hATs: Evidence for Recent DNA Transposon Activity in Genus Myotis
    Mol Biol Evol, Vol. 24, No. 3. (1 March 2007), pp. 632-639.
    by David A Ray, Heidi J Pagan, Michelle L Thompson, Richard D Stevens
    posted to bat genome genome_evolution genome_size repeats by aprasad on 2007-03-03 18:14:35 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.
    Proc Natl Acad Sci U S A (16 February 2007)
    by Andrew MM Shedlock, Christopher WW Botka, Shaying Zhao, Jyoti Shetty, Tingting Zhang, Jun SS Liu, Patrick JJ Deschavanne, Scott VV Edwards
    posted to repeats genome_evolution genomics intrinsic_features phylogenomics reptile by aprasad on 2007-02-27 20:40:36 as ***
  • Intron Length Evolution in Drosophila.
    Mol Biol Evol (21 August 2006)
    by Daven CC Presgraves
    posted to indel genome_size genome_evolution by aprasad on 2007-01-22 16:22:57 as ** along with 5 people and 1 group druvus JAShapiro indigoviolet dpollard lilou EisenLab
  • Intron length and accelerated 3' gene evolution
    Genomics, Vol. 88, No. 6. (December 2006), pp. 682-689.
    by Clara S Tang, Yong Z Zhao, David K Smith, Richard J Epstein
    posted to mutation_rate mutation genome_evolution by aprasad on 2007-01-17 21:33:23 as **
  • Competition may determine the diversity of transposable elements
    Theoretical Population Biology, Vol. 70, No. 3. (November 2006), pp. 364-375.
    by Gyorgy Abrusan, Hans J Krambeck
    posted to comparative_genomics genome_evolution repeats retrotransposon by aprasad on 2006-12-18 19:52:33 as **
  • Rapidly evolving repetitive DNAs in a conservative genome: A test of factors that affect chromosomal evolution
    Chromosome Research, Vol. V2, No. 5. (1994), pp. 354-360.
    by Robert D Bradley, Holly A Wichman
    posted to bat genome_evolution rearrangement repeats tandem_repeats by aprasad on 2006-11-27 16:10:28 as **
  • Genomic Convergence toward Diploidy in Saccharomyces cerevisiae.
    PLoS Genet, Vol. 2, No. 9. (22 September 2006)
    by Aleeza CC Gerstein, Hye, Alex Grant, Sarah PP Otto
    posted to genome_evolution genome_size yeast by aprasad on 2006-10-04 19:13:59 as **
  • Scan of Human Genome Reveals No New Loci Under Ancient Balancing Selection
    Genetics, Vol. 173, No. 4. (1 August 2006), pp. 2165-2177.
    by KL Bubb, D Bovee, D Buckley, E Haugen, M Kibukawa, M Paddock, A Palmieri, S Subramanian, Y Zhou, R Kaul, P Green, MV Olson
    posted to genome_evolution selection by aprasad on 2006-09-26 14:24:32 as ** along with 1 person proulx
  • Is the population size of a species relevant to its evolution?
    Evolution Int J Org Evolution, Vol. 55, No. 11. (11 November 2001), pp. 2161-2169.
    by JH Gillespie
    posted to genome_evolution selection by aprasad on 2006-09-26 14:21:50 as ** along with 3 people and 1 group jmeppley bpcusack rvosa FAB-lab
  • Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus.
    Proc Natl Acad Sci U S A, Vol. 103, No. 25. (20 June 2006), pp. 9566-9571.
    by PR Gilson, V Su, CH Slamovits, ME Reith, PJ Keeling, GI Mcfadden
    posted to exon genome_evolution by aprasad on 2006-09-26 14:02:13 as **
  • Incongruent evolution of chromosomal size in rice.
    Genet Mol Res, Vol. 5, No. 2. (2006), pp. 373-389.
    by X Guo, G Xu, Y Zhang, X Wen, W Hu, L Fan
    posted to genome_evolution genome_size plants repeats by aprasad on 2006-07-10 15:45:35 as **
  • Transposon-free regions in mammalian genomes.
    Genome Res, Vol. 16, No. 2. (February 2006), pp. 164-172.
    by C Simons, M Pheasant, IV Makunin, JS Mattick
    posted to genome genome_evolution repeats retrotransposon transposon whole_genome by aprasad on 2006-05-09 13:55:57 as ** along with 5 people and 3 groups tuck andersbj dchughes mtagaya elzodw microRNA G4ID Genetics-of-Gambling
  • notes Duplication events and the evolution of segmental identity
    Evolution & Development, Vol. 7, No. 6. (November 2005), pp. 556-567.
    by I Hurley, ME Hale, VE Prince
    posted to duplication evolution genome_evolution selection speciation by aprasad on 2006-04-28 15:14:24 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Comparative genomics.
    PLoS Biol, Vol. 1, No. 2. (November 2003)
    by RC Hardison
    posted to comparative_genomics genome_evolution review by aprasad on 2006-04-10 17:34:40 as ** along with 4 people and 1 group axelon beatrizfernandez nklee Neeperando Microbial-Ecology
  • On the coevolution of genes and genetic code.
    Gene, Vol. 362 (5 December 2005), pp. 133-140.
    by H Goodarzi, Shateri H Najafabadi, N Torabi
    posted to codon genome_evolution usage yeast by aprasad on 2006-04-10 17:27:08 as **
  • Changes in body temperature pattern in vertebrates do not influence the codon usages of alpha-globin genes.
    Genes Genet Syst, Vol. 77, No. 3. (June 2002), pp. 197-207.
    by K Hamada, T Horiike, S Kanaya, H Nakamura, H Ota, T Yatogo, K Okada, H Nakamura, T Shinozawa
    posted to bat gc genome_evolution by aprasad on 2006-04-04 19:27:14 as **
  • "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison
    Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 347-354.
    by Alexander E Vinogradov
    posted to cns genome_evolution genome_size jc selection whole_genome by aprasad on 2006-03-31 00:43:33 as ** along with 5 people and 2 groups tuck indigoviolet penka miniprep lilou EisenLab Nie
  • Low Rates of Expression-Profile Divergence in Highly-Expressed Genes and Tissue-Specific Genes During Mammalian Evolution.
    Mol Biol Evol (6 March 2006)
    by Ben, Jianzhi Zhang
    posted to evolution genome_evolution human_genome jc selection whole_genome by aprasad on 2006-03-31 00:39:36 as ** along with 5 people and 1 group dragonrez dpollard djkt cjeans emarker EisenLab
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by Allan, Jesse DD Bloom, Christoph Adami, Claus OO Wilke, Frances HH Arnold
    posted to evolution genome_evolution jc selection by aprasad on 2006-03-31 00:25:58 as ** along with 14 people and 5 groups rklancer stevanspringer bjorns imouthesmp dayjm Einat marcius xwbcn penka balabu malcook balicea RamuAnandakrishnan wilbur structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
  • PCR-based approach to SINE isolation: simple and complex SINEs.
    Gene, Vol. 349 (11 April 2005), pp. 197-205.
    by OR Borodulina, DA Kramerov
    posted to bat genome_evolution repeats by aprasad on 2006-03-28 16:47:22 as ** along with 1 person echinotrix
  • Conserved noncoding sequences are selectively constrained and not mutation cold spots
    Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227.
    by Jared A Drake, Christine Bird, James Nemesh, Daryl J Thomas, Christopher N Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E Antonarakis, Emmanouil T Dermitzakis, Joel N Hirschhorn
    posted to cns genome_evolution human_genome jc whole_genome by aprasad on 2006-02-25 21:39:22 as **** along with 6 people and 2 groups xianjun ccots ashandanj Stew cisevol bpcusack EisenLab cis-regulatory-evolution
  • Large-scale structure of genomic methylation patterns.
    Genome Res (19 December 2005)
    by Robert AA Rollins, Fatemeh Haghighi, John RR Edwards, Rajdeep Das, Michael QQ Zhang, Jingyue Ju, Timothy HH Bestor
    posted to genome_evolution genome_size methylation by aprasad on 2006-01-03 18:14:04 as *** along with 5 people and 1 group huiminC oelemento kaspermunch tabu epigenetics Bioinformatics
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to cns comparative_genomics conservation evolution genome_evolution mutation_rate phastcons by aprasad on 2005-12-02 22:15:13 as ** along with 16 people and 4 groups tharris bpb balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
  • A fine-scale map of recombination rates and hotspots across the human genome.
    Science, Vol. 310, No. 5746. (14 October 2005), pp. 321-324.
    by S Myers, L Bottolo, C Freeman, G Mcvean, P Donnelly
    posted to genome_evolution recombination by aprasad on 2005-12-02 22:08:09 as *** along with 7 people maren jo_davies sriram_s larios djkt hms oelemento
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi F Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to coding evolution genome_evolution mutation_rate selection by aprasad on 2005-10-31 21:12:42 as ***** along with 17 people and 5 groups renewang jo_davies stevanspringer operon jwortman dayjm balajis marcius dpollard hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Diversity and clustered distribution of retrotransposable elements in the compact genome of the pufferfish Tetraodon nigroviridis.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 522-536.
    by C Fischer, L Bouneau, JP Coutanceau, J Weissenbach, Ozouf C Costaz, JN Volff
    posted to genome_evolution genome_size jc repeats retrotransposon tetraodon transposon by aprasad on 2005-10-31 21:06:53 as ****
  • Adaptive evolution of non-coding DNA in Drosophila
    Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1149-1152.
    by Peter Andolfatto
    posted to coding genome genome_evolution human_genome mutation mutation_rate by aprasad on 2005-10-25 19:38:13 as ** along with 13 people and 4 groups rouault stevanspringer bpb jmeppley balicea jimmithy emilyhare cdawson adepace pradiptaray Stew mimulus_99 cisevol EisenLab FAB-lab GIG cis-regulatory-evolution
  • Restructuring the genome in response to adaptive challenge: McClintock's bold conjecture revisited.
    Cold Spring Harb Symp Quant Biol, Vol. 69 (2004), pp. 349-354.
    by RA Jorgensen
    posted to genome_evolution mcclintock mutation_rate recombination by aprasad on 2005-10-25 19:00:55 as **
  • Gene complexity and gene duplicability.
    Curr Biol, Vol. 15, No. 11. (7 June 2005), pp. 1016-1021.
    by X He, J Zhang
    posted to functional genome_evolution genomics by aprasad on 2005-10-05 18:30:56 as ** along with 1 person bpcusack
  • Distribution and intensity of constraint in mammalian genomic sequence.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 901-913.
    by GM Cooper, EA Stone, G Asimenos, ED Green, S Batzoglou, A Sidow
    posted to comparative_genomics evolution genome_evolution sequence by aprasad on 2005-09-20 19:42:46 as **** along with 5 people operon nirfriedman JeffR100 Garamonfok tale
  • Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.
    Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348.
    by Z Zhang, M Gerstein
    posted to evolution genome_evolution genomics indel mutation_rate by aprasad on 2005-09-15 21:42:56 as **
  • Genome trees and the nature of genome evolution.
    Annu Rev Microbiol, Vol. 59 (2005), pp. 191-209.
    by B Snel, BE Dutilh
    posted to evolution genome_evolution horizontal_gene_transfer phylogenomics supertree by aprasad on 2005-09-14 16:11:37 as ** along with 2 people knaseanka dayjm
  • Synergy between sequence and size in Large-scale genomics
    Nature Reviews Genetics, Vol. 6, No. 9. (01 September 2005), pp. 699-708.
    by Ryan T Gregory
    posted to genome_evolution genome_size review by aprasad on 2005-09-13 19:29:28 as ** along with 2 people cmzmasek brant
  • The Evolution of the Genome
    (22 December 2004)
    by Ryan T Gregory
    posted to book genome genome_evolution genome_size by aprasad on 2005-09-12 21:48:39 as ** along with 2 people matzke dayjm
  • The decline of isochores in mammals: an assessment of the GC content variation along the mammalian phylogeny.
    J Mol Evol, Vol. 58, No. 6. (June 2004), pp. 653-660.
    by EM Belle, L Duret, N Galtier, Eyre A Walker
    posted to evolution gc genome_evolution island isochore by aprasad on 2005-09-08 17:09:52 as **
  • Size of the protein-coding genome and rate of molecular evolution.
    J Hum Genet, Vol. 50, No. 5. (2005), pp. 217-229.
    by ZA Rajic, GM Jankovic, A Vidovic, NM Milic, D Skoric, M Pavlovic, V Lazarevic
    posted to genome_evolution genome_size mutation_rate by aprasad on 2005-08-29 16:01:11 as *** along with 1 person and 1 group penka Nie
  • Genome phylogeny based on short-range correlations in DNA sequences.
    J Comput Biol, Vol. 12, No. 5. (June 2005), pp. 545-553.
    by M Dehnert, R Plaumann, WE Helm, MT Hütt
    posted to genome_evolution phylogenomics signature by aprasad on 2005-08-29 15:51:31 as **
  • What tangled web: barriers to rampant horizontal gene transfer.
    Bioessays, Vol. 27, No. 7. (July 2005), pp. 741-747.
    by CG Kurland
    posted to evolution genome_evolution genome_size horizontal_gene_transfer indel review by aprasad on 2005-08-18 20:01:41 as read along with 1 person rklancer
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