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aprasads cns [22 articles]

Neue Publikationen in aprasads Bibliothek eingetragen unter dem Bezeichner: cns. You can also see everyone's cns.
  • Computational identification of transcriptional regulatory elements in DNA sequence
    Nucl. Acids Res., Vol. 34, No. 12. (19 July 2006), pp. 3585-3598.
    by Debraj Guhathakurta
    posted to review regulatory methods cns by aprasad on 2008-12-04 23:19:47 as ** along with 10 people and 1 group isimpson tmmurali jfr johncumbers reidy giovanni cabbagezs ankur_iitg vietanh0 xili03 GeschwindLab
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to cns regulatory selection by aprasad on 2008-08-15 20:10:22 as ** along with 9 people and 2 groups xianjun madreach alhufton djkt bpcusack pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
  • Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements
    Proceedings of the National Academy of Sciences (11 December 2007), 0705658104.
    by Sergey I Nikolaev, Juan, Konstantin Popadin, Leila Parand, Elliott H Margulies, Nisc, Stylianos E Antonarakis
    posted to cns coding evolution substitution_rate by aprasad on 2008-05-22 20:05:25 as ** along with 5 people and 1 group pradiptaray djkt cjeans zwang cisevol cis-regulatory-evolution
  • Qualifying the relationship between sequence conservation and molecular function
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205.
    by Gregory M Cooper, Christopher D Brown
    posted to cns conservation functional_genomics non-coding regulatory by aprasad on 2008-03-07 16:29:07 as ** along with 5 people brant djkt xingxu bpcusack nklee
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
    posted to cns mutation_rate ncrna non-coding selection by aprasad on 2007-09-13 20:01:33 as ** along with 6 people and 4 groups alexg dchughes djkt Stew elfar bpcusack Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Divergence of conserved non-coding sequences: rate estimates and relative rate tests.
    Mol Biol Evol, Vol. 21, No. 11. (November 2004), pp. 2116-2121.
    by GP Wagner, C Fried, SJ Prohaska, PF Stadler
    posted to cns genome_evolution methods mutation_rate by aprasad on 2007-08-28 13:45:31 as **
  • Remote control of gene expression.
    J Biol Chem, Vol. 282, No. 22. (1 June 2007), pp. 15941-15945.
    by X Long, JM Miano
    posted to cns comparative_genomics regulatory by aprasad on 2007-08-13 16:33:48 as **
  • ExactPlus web interface
    by Arjun B Prasad, Anthony Antonellis
    posted to cns comparative_genomics exactplus functional mcs regulatory signature by aprasad on 2007-08-06 22:22:03 as **
  • The evolution of gene regulation by transcription factors and microRNAs
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 93-103.
    by Kevin Chen, Nikolaus Rajewsky
    posted to cns microrna regulatory review by aprasad on 2007-08-04 13:24:43 as ** along with 20 people and 4 groups jfr indigoviolet tardigrade andersbj dchughes emilyhare penka cdawson aswin plofje dbikard joepickrell Garamonfok EeHawk3 jayster4 dandaman maralena heliopais bootsy robertkofler EisenLab microRNA Nie GIG
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3576-3579.
    by AE Kel, E Gössling, I Reuter, E Cheremushkin, Kel OV Margoulis, E Wingender
    posted to cns regulatory tfbs by aprasad on 2007-07-31 23:27:36 as ** along with 6 people setar reidy nklee danish_punter maximilianh emptyhb
  • A statistical analysis of the TRANSFAC database.
    Biosystems, Vol. 81, No. 2. (August 2005), pp. 137-154.
    by GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, HB Harlow, EW Su, JE Onyia, C Su
    posted to cns element regulatory signature transfac by aprasad on 2007-07-31 14:06:55 as **
  • Cross-species sequence comparisons: a review of methods and available resources.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 1-12.
    by KA Frazer, L Elnitski, DM Church, I Dubchak, RC Hardison
    posted to cns comparative_genomics regulatory by aprasad on 2007-07-31 14:05:13 as **
  • Conserved distances between vertebrate highly conserved elements.
    Hum Mol Genet (21 August 2006)
    by Hong Sun, Geir Skogerb√∏, Runsheng Chen
    posted to cns comparative_genomics regulatory spacing by aprasad on 2007-04-18 15:33:48 as ** along with 1 person and 1 group dpollard EisenLab
  • A survey of motif discovery methods in an integrated framework
    Biology Direct, Vol. 1, No. 1. (06 April 2006), 11.
    by Geir K Sandve, Finn Drabl√∏s
    posted to cns element regulatory signature by aprasad on 2007-04-17 15:38:47 as ** along with 7 people and 1 group AbnerCYH dpollard samal yevishere csdhwang idonaldson yoonk EisenLab
  • A large family of ancient repeat elements in the human genome is under strong selection
    PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.
    by Michael Kamal, Xiaohui Xie, Eric S Lander
    posted to cns mammal repeat selection whole_genome by aprasad on 2006-06-26 20:49:09 as ** along with 4 people and 2 groups balicea cmm cisevol gjuggler FAB-lab cis-regulatory-evolution
  • Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity.
    Science (23 March 2006)
    by Shannon Fisher, Elizabeth AA Grice, Ryan MM Vinton, Seneca LL Bessling, Andrew SS Mccallion
    posted to cns element enhancer jc regulatory by aprasad on 2006-04-01 00:24:28 as ** along with 5 people and 3 groups adepace nickluscombe maximilianh cisevol emptyhb EisenLab EBI-regulation cis-regulatory-evolution
  • Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of WaardenburgShah (WS4) syndrome
    Human Molecular Genetics, Vol. 15, No. 2. (15 January 2006), pp. 259-271.
    by Anthony Antonellis, William R Bennett, Arjun B Prasad, Shih-Queen Lee-Lin, Eric D Green, Derek Paisley, Robert N Kelsh, William J Pavan, Andrew Ward
    posted to signature regulatory functional exactplus enhancer element comparative_genomics cns by aprasad on 2006-03-31 22:29:05 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison
    Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 347-354.
    by Alexander E Vinogradov
    posted to cns genome_evolution genome_size jc selection whole_genome by aprasad on 2006-03-31 00:43:33 as ** along with 5 people and 2 groups tuck indigoviolet penka miniprep lilou EisenLab Nie
  • Conserved noncoding sequences are selectively constrained and not mutation cold spots
    Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227.
    by Jared A Drake, Christine Bird, James Nemesh, Daryl J Thomas, Christopher N Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E Antonarakis, Emmanouil T Dermitzakis, Joel N Hirschhorn
    posted to cns genome_evolution human_genome jc whole_genome by aprasad on 2006-02-25 21:39:22 as **** along with 6 people and 2 groups xianjun ccots ashandanj Stew cisevol bpcusack EisenLab cis-regulatory-evolution
  • Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.
    Hum Mol Genet, Vol. 14, No. 20. (15 October 2005), pp. 3057-3063.
    by N Ahituv, S Prabhakar, F Poulin, EM Rubin, O Couronne
    posted to cns comparative_genomics element functional regulatory signal by aprasad on 2006-02-13 20:16:12 as ** along with 1 person maximilianh
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to cns comparative_genomics conservation evolution genome_evolution mutation_rate phastcons by aprasad on 2005-12-02 22:15:13 as ** along with 16 people and 4 groups tharris bpb balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
  • Striking nucleotide frequency pattern at the borders of highly conserved vertebrate non-coding sequences.
    Trends Genet, Vol. 21, No. 8. (August 2005), pp. 436-440.
    by K Walter, I Abnizova, G Elgar, WR Gilks
    posted to cns comparative_genomics genome motif mulliken by aprasad on 2005-08-25 16:48:08 as *** along with 2 people and 2 groups Stew cisevol EisenLab cis-regulatory-evolution
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