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aprasads Zhang [17 articles]

Recent papers posted to aprasads library by the author Zhang. You can also see everyones Zhang.
  • The genome sequence of Drosophila melanogaster.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, PG Amanatides, SE Scherer, PW Li, RA Hoskins, RF Galle, RA George, SE Lewis, S Richards, M Ashburner, SN Henderson, GG Sutton, JR Wortman, MD Yandell, Q Zhang, LX Chen, RC Brandon, YH Rogers, RG Blazej, M Champe, BD Pfeiffer, KH Wan, C Doyle, EG Baxter, G Helt, CR Nelson, GL Gabor, JF Abril, A Agbayani, HJ An, C Andrews-Pfannkoch, D Baldwin, RM Ballew, A Basu, J Baxendale, L Bayraktaroglu, EM Beasley, KY Beeson, PV Benos, BP Berman, D Bhandari, S Bolshakov, D Borkova, MR Botchan, J Bouck, P Brokstein, P Brottier, KC Burtis, DA Busam, H Butler, E Cadieu, A Center, I Chandra, JM Cherry, S Cawley, C Dahlke, LB Davenport, P Davies, B de Pablos, A Delcher, Z Deng, AD Mays, I Dew, SM Dietz, K Dodson, LE Doup, M Downes, S Dugan-Rocha, BC Dunkov, P Dunn, KJ Durbin, CC Evangelista, C Ferraz, S Ferriera, W Fleischmann, C Fosler, AE Gabrielian, NS Garg, WM Gelbart, K Glasser, A Glodek, F Gong, JH Gorrell, Z Gu, P Guan, M Harris, NL Harris, D Harvey, TJ Heiman, JR Hernandez, J Houck, D Hostin, KA Houston, TJ Howland, MH Wei, C Ibegwam, M Jalali, F Kalush, GH Karpen, Z Ke, JA Kennison, KA Ketchum, BE Kimmel, CD Kodira, C Kraft, S Kravitz, D Kulp, Z Lai, P Lasko, Y Lei, AA Levitsky, J Li, Z Li, Y Liang, X Lin, X Liu, B Mattei, TC McIntosh, MP McLeod, D McPherson, G Merkulov, NV Milshina, C Mobarry, J Morris, A Moshrefi, SM Mount, M Moy, B Murphy, L Murphy, DM Muzny, DL Nelson, DR Nelson, KA Nelson, K Nixon, DR Nusskern, JM Pacleb, M Palazzolo, GS Pittman, S Pan, J Pollard, V Puri, MG Reese, K Reinert, K Remington, RD Saunders, F Scheeler, H Shen, BC Shue, I Sidén-Kiamos, M Simpson, MP Skupski, T Smith, E Spier, AC Spradling, M Stapleton, R Strong, E Sun, R Svirskas, C Tector, R Turner, E Venter, AH Wang, X Wang, ZY Wang, DA Wassarman, GM Weinstock, J Weissenbach, SM Williams, WoodageT, KC Worley, D Wu, S Yang, QA Yao, J Ye, RF Yeh, JS Zaveri, M Zhan, G Zhang, Q Zhao, L Zheng, XH Zheng, FN Zhong, W Zhong, X Zhou, S Zhu, X Zhu, HO Smith, RA Gibbs, EW Myers, GM Rubin, JC Venter
    posted to genome drosophila by aprasad on 2008-12-04 20:34:03 as ** along with 8 people and 1 group sdinka Cortel jwortman Dax42 jackjackjjj yulian2108 nklee hplatero Drosophila-Genetics-Genomics-2008
  • Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes
    Nature (20 July 2008)
    by Dacheng Tian, Qiang Wang, Pengfei Zhang, Hitoshi Araki, Sihai Yang, Martin Kreitman, Thomas Nagylaki, Richard Hudson, Joy Bergelson, Jian Q Chen
    posted to substitution_rate mutation_rate mutation indel by aprasad on 2008-10-27 00:48:56 as ** along with 7 people and 1 group dakelley zwang psique djkt caseybrown bpcusack gjuggler parkinson's disease references
  • Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565.
    by Ben Y Liao, Jianzhi Zhang
    posted to evolution expression linkage selection by aprasad on 2008-07-17 00:31:56 as ** along with 4 people Garamonfok djkt zwang bpcusack
  • Estimation of DNA Sequence Context-dependent Mutation Rates Using Primate Genomic Sequences.
    J Mol Evol (4 August 2007)
    by Wei Zhang, Gerard G Bouffard, Susan S Wallace, Jeffrey
    posted to human mutation_rate nisc by aprasad on 2007-08-08 14:38:58 as **
  • PipMaker---A Web Server for Aligning Two Genomic DNA Sequences
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586.
    by Scott Schwartz, Zheng Zhang, Kelly A Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller
    posted to alignment pipmaker tools by aprasad on 2007-07-31 16:20:58 as ** along with 3 people michC adijr wenhan
  • Evolutionary implications of multiple SINE insertions in an intronic region from diverse mammals.
    Mamm Genome, Vol. 16, No. 9. (September 2005), pp. 651-660.
    by L Yu, YP Zhang
    posted to homoplasy indel repeat transposon by aprasad on 2007-07-12 20:55:25 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome.
    Proc Natl Acad Sci U S A (16 February 2007)
    by Andrew MM Shedlock, Christopher WW Botka, Shaying Zhao, Jyoti Shetty, Tingting Zhang, Jun SS Liu, Patrick JJ Deschavanne, Scott VV Edwards
    posted to repeats genome_evolution genomics intrinsic_features phylogenomics reptile by aprasad on 2007-02-27 20:40:36 as ***
  • Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
    PNAS, Vol. 103, No. 36. (5 September 2006), pp. 13427-13432.
    by Xiang H Zhang, Lawrence A Chasin
    posted to evolution exon by aprasad on 2006-09-26 13:58:25 as ** along with 4 people and 3 groups eoghanharr dayjm dchughes paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Incongruent evolution of chromosomal size in rice.
    Genet Mol Res, Vol. 5, No. 2. (2006), pp. 373-389.
    by X Guo, G Xu, Y Zhang, X Wen, W Hu, L Fan
    posted to genome_evolution genome_size plants repeats by aprasad on 2006-07-10 15:45:35 as **
  • Galaxy: a platform for interactive large-scale genome analysis.
    Genome Res, Vol. 15, No. 10. (October 2005), pp. 1451-1455.
    by B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, Y Zhang, D Blankenberg, I Albert, J Taylor, W Miller, WJ Kent, A Nekrutenko
    posted to comparative_genomics galaxy genome tools by aprasad on 2006-04-10 19:16:08 as ** along with 2 people daforerog guhjy
  • Low Rates of Expression-Profile Divergence in Highly-Expressed Genes and Tissue-Specific Genes During Mammalian Evolution.
    Mol Biol Evol (6 March 2006)
    by Ben, Jianzhi Zhang
    posted to evolution genome_evolution human_genome jc selection whole_genome by aprasad on 2006-03-31 00:39:36 as ** along with 5 people and 1 group dragonrez dpollard djkt cjeans emarker EisenLab
  • Large-scale structure of genomic methylation patterns.
    Genome Res (19 December 2005)
    by Robert AA Rollins, Fatemeh Haghighi, John RR Edwards, Rajdeep Das, Michael QQ Zhang, Jingyue Ju, Timothy HH Bestor
    posted to genome_evolution genome_size methylation by aprasad on 2006-01-03 18:14:04 as *** along with 5 people and 1 group huiminC oelemento kaspermunch tabu epigenetics Bioinformatics
  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
    Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.
    by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C Deramo, O Delgado, Dugan S Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, Baden H Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, Doucette L Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J Mcpherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, Gonzalez ML Garay, AR Jackson, KJ Kalafus, MP Mcleod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, Ureta A Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, Mar M Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, Gullings J Handley, Jensen MI Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC Hardison, M Hou, D Kolbe, K Makova, W Miller, A Nekrutenko, C Riemer, S Schwartz, J Taylor, S Yang, Y Zhang, K Lindpaintner, TD Andrews, M Caccamo, M Clamp, L Clarke, V Curwen, R Durbin, E Eyras, SM Searle, GM Cooper, S Batzoglou, M Brudno, A Sidow, EA Stone, JC Venter, BA Payseur, G Bourque, López C Otín, XS Puente, K Chakrabarti, S Chatterji, C Dewey, L Pachter, N Bray, VB Yap, A Caspi, G Tesler, PA Pevzner, D Haussler, KM Roskin, R Baertsch, H Clawson, TS Furey, AS Hinrichs, D Karolchik, WJ Kent, KR Rosenbloom, H Trumbower, M Weirauch, DN Cooper, PD Stenson, B Ma, M Brent, M Arumugam, D Shteynberg, RR Copley, MS Taylor, H Riethman, U Mudunuri, J Peterson, M Guyer, A Felsenfeld, S Old, S Mockrin, And F Collins
    posted to comparative_genomics genome rat sequence whole_genome by aprasad on 2005-12-19 22:27:51 as **** along with 6 people and 4 groups gjuggler ccots rvosa dchughes djkt stajich FAB-lab G4ID Genetics-of-Gambling Berkeley Mycology
  • Gene complexity and gene duplicability.
    Curr Biol, Vol. 15, No. 11. (7 June 2005), pp. 1016-1021.
    by X He, J Zhang
    posted to functional genome_evolution genomics by aprasad on 2005-10-05 18:30:56 as ** along with 1 person bpcusack
  • Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes.
    Nucleic Acids Res, Vol. 31, No. 18. (15 September 2003), pp. 5338-5348.
    by Z Zhang, M Gerstein
    posted to evolution genome_evolution genomics indel mutation_rate by aprasad on 2005-09-15 21:42:56 as **
  • Molecular phylogenetics and the origins of placental mammals.
    Nature, Vol. 409, No. 6820. (1 February 2001), pp. 614-618.
    by WJ Murphy, E Eizirik, WE Johnson, YP Zhang, OA Ryder, SJ O'Brien
    posted to mammal murphy phylogenetics tree by aprasad on 2005-08-08 22:22:41 as read along with 1 person and 2 groups Flit biodiversity_conservation Global_biodiversity_model
  • Comparative analyses of multi-species sequences from targeted genomic regions.
    Nature, Vol. 424, No. 6950. (14 August 2003), pp. 788-793.
    by JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, Beckstrom SM Sternberg, EH Margulies, M Blanchette, AC Siepel, PJ Thomas, JC Mcdowell, B Maskeri, NF Hansen, MS Schwartz, RJ Weber, WJ Kent, D Karolchik, TC Bruen, R Bevan, DJ Cutler, S Schwartz, L Elnitski, JR Idol, AB Prasad, Lee SQ Lin, VV Maduro, TJ Summers, ME Portnoy, NL Dietrich, N Akhter, K Ayele, B Benjamin, K Cariaga, CP Brinkley, SY Brooks, S Granite, X Guan, J Gupta, P Haghighi, SL Ho, MC Huang, E Karlins, PL Laric, R Legaspi, MJ Lim, QL Maduro, CA Masiello, SD Mastrian, JC Mccloskey, R Pearson, S Stantripop, EE Tiongson, JT Tran, C Tsurgeon, JL Vogt, MA Walker, KD Wetherby, LS Wiggins, AC Young, LH Zhang, K Osoegawa, B Zhu, B Zhao, CL Shu, PJ De Jong, CE Lawrence, AF Smit, A Chakravarti, D Haussler, P Green, W Miller, ED Green
    posted to comparative_genomics mcs nature targeted_sequencing zooseq by aprasad on 2005-08-08 22:04:51 as read along with 3 people and 1 group radek adepace AaronDarling EisenLab
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