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andytsengs library [92 articles]

Neue Artikel in andytsengs Bibliothek.
  • Text mining and ontologies in biomedicine: making sense of raw text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 239-251.
    by I Spasic, S Ananiadou, J McNaught, A Kumar
    posted to biomedical ontology text_mining by andytseng on 2006-07-27 15:27:01 as *** along with 7 people and 3 groups yggdrasil irenas yas hpiwowar helliontroy johnkork daniel_schober dbk-lab T_lab biomedical-nlp
  • Biomedical Language Processing: What's Beyond PubMed?
    Mol Cell, Vol. 21, No. 5. (3 March 2006), pp. 589-594.
    by L Hunter, KB Cohen
    posted to biomedical nlp by andytseng on 2006-07-27 15:25:58 as *** along with 7 people and 3 groups satre TheresaNiederberger irenas yas hpiwowar caporaso jacky957 dbk-lab T_lab biomedical-nlp
  • A metabolome pipeline: from concept to data to knowledge
    Metabolomics, Vol. 1, No. 1. (March 2005), pp. 39-51.
    by Marie Brown, Warwick B Dunn, David I Ellis, Royston Goodacre, Julia Handl, Joshua D Knowles, Steve O'Hagan, Irena Spasic, Douglas B Kell
    posted to data machine_learning metabolome omics by andytseng on 2006-07-27 15:25:15 as ** along with 3 people and 1 group JeremyZucker irenas egonw dbk-lab
  • Metabolic footprinting and systems biology: the medium is the message
    Nature Reviews Microbiology, Vol. 3, No. 7. (01 July 2005), pp. 557-565.
    by Douglas B Kell, Marie Brown, Hazel M Davey, Warwick B Dunn, Irena Spasic, Stephen G Oliver
    posted to metabolomics omics systems_biology by andytseng on 2006-07-27 15:24:03 as *** along with 4 people and 1 group bayesian irenas Borelli alexg dbk-lab
  • MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics
    BMC Bioinformatics, Vol. 7 (2006), 281.
    by Irena Spasic, Warwick Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel W Hardy, Stephen G Oliver, Douglas B Kell
    posted to data database metabolomics modeling omics ontology xml by andytseng on 2006-07-27 15:16:13 as read along with 2 people and 1 group orzenil irenas dbk-lab
  • A Proposal For A Common Data Exchange Format For Repertory Grid Data
    Journal of Constructivist Psychology, Vol. 17, No. 3. (July 2004), pp. 247-251.
    by Otto B Walter, Andreas Bacher, Martin Fromm
    posted to data database grid by andytseng on 2006-05-02 16:09:32 as **
  • Design of a data model for developing laboratory information management and analysis systems for protein production.
    Proteins, Vol. 58, No. 2. (1 February 2005), pp. 278-284.
    by A Pajon, J Ionides, J Diprose, J Fillon, R Fogh, AW Ashton, H Berman, W Boucher, M Cygler, E Deleury, R Esnouf, J Janin, R Kim, I Krimm, CL Lawson, E Oeuillet, A Poupon, S Raymond, T Stevens, H van Tilbeurgh, J Westbrook, P Wood, E Ulrich, W Vranken, L Xueli, E Laue, DI Stuart, K Henrick
    posted to data modeling by andytseng on 2006-05-02 12:02:15 as ***
  • An algebra for semantic interoperability of information sources
    Bioinformatics and Bioengineering Conference, 2001. Proceedings of the IEEE 2nd International Symposium on (2001), pp. 174-182.
    by P Mitra, G Wiederhold
    posted to modeling ontology semantic by andytseng on 2006-04-19 11:59:52 as ***
  • OntoKhoj: a semantic web portal for ontology searching, ranking and classification
    (2003), pp. 58-61.
    by Chintan Patel, Kaustubh Supekar, Yugyung Lee, EK Park
    posted to ontology ranking semantic_web by andytseng on 2006-04-04 17:25:48 as read along with 4 people and 2 groups wcrosbie gphroh taho searchy Wikipedia CoP_CMS
  • Searching and Ranking Ontologies on the Semantic Web
    (2005), pp. 57-60.
    by Edward Thomas, Harith Alani, Derek Sleeman, Christopher Brewster
    posted to ontology search_engine semantic_web_mining by andytseng on 2006-04-04 16:41:14 as read
  • Functional genomics databases on the web
    Cellular Microbiology, Vol. 7, No. 8. (August 2005), pp. 1053-1059.
    by Christian J Stoeckert
    posted to database fuge www by andytseng on 2006-04-03 15:36:11 as *** along with 1 person and 1 group irenas dbk-lab
  • Top-down standards will not serve systems biology
    Nature, Vol. 440, No. 7080. (01 March 2006), pp. 24-24.
    by John Quackenbush, Christian Stoeckert, Catherine Ball, Alvis Brazma, Robert Gentleman, Wolfgang Huber, Rafael Irizarry, Marc Salit, Gavin Sherlock, Paul Spellman, Neil Winegarden
    posted to standard systems_biology by andytseng on 2006-04-03 15:33:44 as *** along with 3 people and 1 group irenas wnpx mhucka dbk-lab
  • Computational prediction of human metabolic pathways from the complete human genome.
    Genome Biol, Vol. 6, No. 1. (2005)
    by P Romero, J Wagg, ML Green, D Kaiser, M Krummenacker, PD Karp
    posted to gene human_genome metabolic_pathway by andytseng on 2006-02-14 12:08:00 as *** along with 4 people and 2 groups tmmurali okarsligil eweaver bsmagic Bioinformatics bioinplant
  • ChemDB: a public database of small molecules and related chemoinformatics resources.
    Bioinformatics (20 September 2005)
    by Jonathan Chen, S Joshua J Swamidass, Yimeng Dou, Jocelyne Bruand, Pierre Baldi
    posted to database omics by andytseng on 2006-02-06 15:33:20 as read along with 1 person BragilMassoud
  • Fusion of mass spectrometry-based metabolomics data.
    Anal Chem, Vol. 77, No. 20. (15 October 2005), pp. 6729-6736.
    by AK Smilde, MJ van der Werf, S Bijlsma, BJ van der Werff-van der Vat, RH Jellema
    posted to data mass_spectrometry metabolomics by andytseng on 2006-01-30 15:53:02 as *** along with 2 people and 1 group irenas rvosa dbk-lab
  • Grammatical model of the regulation of gene expression.
    Proc Natl Acad Sci U S A, Vol. 89, No. 20. (15 October 1992), pp. 9405-9409.
    by J Collado-Vides
    posted to genomics modeling by andytseng on 2006-01-30 15:51:01 as *** along with 3 people and 1 group irenas discreteonyxorb maximilianh dbk-lab
  • From XML to RDF: how semantic web technologies will change the design of 'omic' standards
    Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103.
    by Xiaoshu Wang, Robert Gorlitsky, Jonas S Almeida
    posted to modeling omics rdf standard xml by andytseng on 2006-01-30 15:48:03 as read along with 10 people and 2 groups dansullivanblk irenas moborg wnpx dullhunk hpiwowar ianturton mza jmuhlich ibuch dbk-lab SorgerLab
  • A proposed framework for the description of plant metabolomics experiments and their results
    Nature Biotechnology, Vol. 22, No. 12. (06 December 2004), 1601.
    by Helen Jenkins, Nigel Hardy, Manfred Beckmann, John Draper, Aileen R Smith, Janet Taylor, Oliver Fiehn, Royston Goodacre, Raoul J Bino, Robert Hall, Joachim Kopka, Geoffrey A Lane, Markus M Lange, Jang R Liu, Pedro Mendes, Basil J Nikolau, Stephen G Oliver, Norman W Paton, Sue Rhee, Ute Roessner-Tunali, Kazuki Saito, Jørn Smedsgaard, Lloyd W Sumner, Trevor Wang, Sean Walsh, Eve S Wurtele, Douglas B Kell
    posted to metabolomics modeling ontology by andytseng on 2006-01-20 16:18:58 as read along with 9 people and 2 groups dullhunk dbk irenas betainverse LeightonP agileproteomics BIBLIOma pmendes katerinakal streptomyces dbk-lab
  • Functional annotation and network reconstruction through cross-platform integration of microarray data
    Nature Biotechnology, Vol. 23, No. 2. (16 January 2005), pp. 238-243.
    by Xianghong J Zhou, Ming-Chih J Kao, Haiyan Huang, Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M Aparicio, Caleb E Finch, Todd E Morgan, Wing H Wong
    posted to algorithm data modeling omics by andytseng on 2005-12-06 13:02:04 as read along with 6 people and 2 groups setar imouthesmp lyongu wnpx rdiaz bsmagic Bioinformatics bioinplant
  • Will a Biological Database Be Different from a Biological Journal?
    PLoS Computational Biology, Vol. 1, No. 3. (26 August 2005), pp. 0179-0181.
    by Philip Bourne
    posted to bioinformatics database by andytseng on 2005-10-11 13:30:46 as read
  • Biological Databases for Plant Research
    Plant Physiology, Vol. 138, No. 1., pp. 1-3.
    by Seung Y Rhee, Bill Crosby
    posted to bioinformatics database omics by andytseng on 2005-10-10 14:48:04 as read
  • Summary recommendations for standardization and reporting of metabolic analyses.
    Nat Biotechnol, Vol. 23, No. 7. (July 2005), pp. 833-838.
    by JC Lindon, JK Nicholson, E Holmes, HC Keun, A Craig, JT Pearce, SJ Bruce, N Hardy, SA Sansone, H Antti, P Jonsson, C Daykin, M Navarange, RD Beger, ER Verheij, A Amberg, D Baunsgaard, GH Cantor, L Lehman-McKeeman, M Earll, S Wold, E Johansson, JN Haselden, K Kramer, C Thomas, J Lindberg, I Schuppe-Koistinen, ID Wilson, MD Reily, DG Robertson, H Senn, A Krotzky, S Kochhar, J Powell, F van der Ouderaa, R Plumb, H Schaefer, M Spraul
    posted to metabolomics standard by andytseng on 2005-08-10 10:02:21 as *** along with 4 people and 1 group irenas betainverse daniel_schober BIBLIOma dbk-lab
  • A Short Study on the Success of the Gene Ontology
    Journal of Web Semantics, Vol. 1, No. 2. (2004)
    by Michael Bada, Robert Stevens, Carole Goble, Yolanda Gil, Michael Ashburner, Judith A Blake, Michael J Cherry, Midori Harris, Suzanna Lewis
    edited by Carole Goble, Toru Ishida, Rudi Studer, Stefan Decker
    posted to database gene ontology by andytseng on 2005-08-10 09:58:15 as read
  • GENOMICS: A Crisis in Postgenomic Nomenclature
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 671-672.
    by Stanley Fields, Mark Johnston
    posted to genomics omics by andytseng on 2005-06-27 13:04:28 as read along with 1 person and 1 group irenas dbk-lab
  • Metabolomics: Current Analytical Platforms and Methodologies
    Vol. 24, No. 4. (2005), pp. 285-294.
    by Warwick B Dunn, David I Ellis
    posted to infrared_spectroscopy mass_spectrometry metabolic_fingerprinting metabolic_profiling metabolite metabolome metabolomics metabonomics nmr by andytseng on 2005-06-27 09:42:59 as read
  • Measuring the Metabolome: Current Analytical Technologies
    The Analyst,, No. 130. (2005), pp. 606-625.
    by Warwick B Dunn, Nigel JC Bailey, Helen Johnson
    posted to metabolome by andytseng on 2005-06-27 09:35:36 as read
  • Semantic similarity measures as tools for exploring the gene ontology.
    Pac Symp Biocomput (2003), pp. 601-612.
    by PW Lord, RD Stevens, A Brass, CA Goble
    posted to gene ontology by andytseng on 2005-06-09 17:09:18 as ***** along with 8 people and 3 groups irenas CitoJam ejmeij gaudan josemblazquez macavity1g sgoetz pmidford dbk-lab ilps LanguageModeling
  • Data mining and knowledge discovery in databases
    Commun. ACM, Vol. 39, No. 11. (November 1996), pp. 24-26.
    by Usama Fayyad, Ramasamy Uthurusamy
    posted to data_mining database knowledge_discovery by andytseng on 2005-06-09 17:07:24 as read along with 2 people and 2 groups irenas horeis dbk-lab CompIntelligentSystems
  • Growing Pains for Metabolomics - The newest 'omic science is producing results - and more data than researchers know what to do with.
    (25 April 2005), pp. 25-28.
    by Bennett Daviss
    posted to metabolomics omics by andytseng on 2005-06-09 16:56:19 as read
  • An Evaluation of Representing Proteomics Experiments within FuGE-OM
    (April 2005)
    by Andrew Jones, Angel Pizarro, Paul Spellman, Chris Taylor, Norman Paton
    posted to fuge modeling omics ontology by andytseng on 2005-06-09 12:05:46 as read
  • Data standards for 'omic' science - Nature Biotechnology
    Nature Biotechnology, Vol. 22, No. 5. (2004), pp. 613-614.
    by John Quackenbush
    posted to data omics standard by andytseng on 2005-05-25 16:03:58 as read
  • A survey in indexing and searching XML documents
    J. Am. Soc. Inf. Sci. Technol., Vol. 53, No. 6. (May 2002), pp. 415-437.
    by Robert W Luk, HV Leong, Tharam S Dillon, Alvin T Chan, Bruce B Croft, James Allan
    posted to algorithm data database modeling xml by andytseng on 2005-05-11 13:56:37 as *** along with 3 people and 2 groups arjen bug dagmar dIEMoSIRIS compneur
  • On views and XML
    SIGMOD Rec., Vol. 28, No. 4. (1999), pp. 30-38.
    by Serge Abiteboul
    posted to data database schema xml by andytseng on 2005-05-11 13:53:54 as **
  • Querying structured text in an XML database
    (2003), pp. 4-15.
    by Shurug Al-Khalifa, Cong Yu, HV Jagadish
    posted to algorithm database query_optimisation xml by andytseng on 2005-05-11 13:49:47 as ** along with 1 person arjen
  • Automata theory for XML researchers
    SIGMOD Rec., Vol. 31, No. 3. (September 2002), pp. 39-46.
    by Frank Neven
    posted to modeling xml by andytseng on 2005-05-11 13:46:27 as **** along with 3 people and 5 groups kinaba voigt seabay Blog_and_Wiki_Research CSCW OpenArchive P2P XMLDataManagement
  • A data model for XML databases
    J. Intell. Inf. Syst., Vol. 20, No. 1. (January 2003), pp. 63-80.
    by Vilas Wuwongse, Kiyoshi Akama, Chutiporn Anutariya, Ekawit Nantajeewarawat
    posted to database modeling xml by andytseng on 2005-05-11 13:42:59 as read along with 1 person wasi
  • Data modeling in the understanding database course: adding UML and XML modeling to the traditional course content
    J. Comput. Small Coll., Vol. 17, No. 5. (April 2002), pp. 147-153.
    by Bruce J Neubauer
    posted to data database modeling uml xml by andytseng on 2005-05-11 13:40:53 as ****
  • Adding Structure to Unstructured Data
    Vol. 1186 (August--October~ 1997), pp. 336-350.
    by Peter Buneman, Susan B Davidson, Mary F Fernandez, Dan Suciu
    edited by Foto N Afrati, Phokion Kolaitis
    posted to data semistructured_data by andytseng on 2005-05-11 11:19:10 as **** along with 1 person goltus
  • Semistructured data and XML
    (2000), pp. 9-30.
    by Dan Suciu
    posted to query_language query_optimisation semistructured_data xml by andytseng on 2005-05-11 10:44:45 as ****
  • Data on the Web: from relations to semistructured data and XML
    (2000)
    by Serge Abiteboul, Peter Buneman, Dan Suciu
    posted to data database www xml by andytseng on 2005-05-11 10:36:33 as read along with 2 people and 1 group takeha-e mahler Rightscom
  • Requirements for XML document database systems
    (2001), pp. 85-94.
    by Airi Salminen, FW Frank
    posted to database requirement_engineering xml by andytseng on 2005-05-11 10:18:42 as read
  • On Uncertainty and Data-Warehouse Design
    Lecture Notes in Computer Science, Vol. 3261 (October 2004), pp. 4-13.
    by Panagiotis Chountas, Ilias Petrounias, Christos Vasilakis, Andy Tseng, Elia El-Darzi, Krassimir T Atanassov, Vassilis Kodogiannis
    posted to data data_mining olap warehouse by andytseng on 2005-05-06 17:19:17 as read
  • Creating a bioinformatics nation.
    Nature, Vol. 417, No. 6885. (9 May 2002), pp. 119-120.
    by L Stein
    posted to integration xml by andytseng on 2005-05-06 17:15:29 as ***** along with 10 people and 1 group rvosa irenas balicea moborg wnpx dullhunk fisherp cjeans sentausa pablomendes dbk-lab
  • XML Databases, are Ready for Bioinformatics?
    (2004), pp. 166-170.
    by Jose M Fernandez, Alfonso Valencia
    edited by Xavier Messeguer, Gabriel Valiente
    posted to bioinformatics database xml by andytseng on 2005-05-06 17:14:47 as read along with 1 person and 1 group irenas dbk-lab
  • Using XML technology for the ontology-based semantic integration of life science databases.
    IEEE Trans Inf Technol Biomed, Vol. 8, No. 2. (June 2004), pp. 154-160.
    by S Philippi, J Köhler
    posted to database ontology xml by andytseng on 2005-05-06 17:14:20 as ***** along with 2 people and 1 group irenas agileproteomics dbk-lab
  • Plug-and-play XML: a health care perspective.
    J Am Med Inform Assoc, Vol. 9, No. 1. (b 2002), pp. 37-48.
    by R Schweiger, S Hoelzer, U Altmann, J Rieger, J Dudeck
    posted to xml by andytseng on 2005-05-06 17:13:43 as ***** along with 2 people and 1 group irenas m5101202 dbk-lab
  • YAdumper: extracting and translating large information volumes from relational databases to structured flat files.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2455-2457.
    by JM Fernández, A Valencia
    posted to data database xml by andytseng on 2005-05-06 17:13:23 as ***** along with 1 person and 1 group irenas dbk-lab
  • Dynamic XML-based exchange of relational data: application to the Human Brain Project.
    AMIA Annu Symp Proc (2003), pp. 644-648.
    by Z Tang, Y Kadiyska, H Li, D Suciu, JF Brinkley
    posted to bioinformatics data xml by andytseng on 2005-05-06 17:12:49 as **** along with 1 person and 1 group irenas dbk-lab
  • Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML.
    Pac Symp Biocomput (2002), pp. 88-99.
    by DL Rubin, M Hewett, DE Oliver, TE Klein, RB Altman
    posted to data ontology xml by andytseng on 2005-05-06 17:12:14 as **** along with 1 person and 1 group irenas dbk-lab
  • Designing XML schemas for bioinformatics.
    Biotechniques, Vol. 34, No. 6. (June 2003)
    by RE Bruhn, PJ Burton
    posted to bioinformatics schema xml by andytseng on 2005-05-06 17:11:25 as ***** along with 2 people and 1 group irenas dullhunk dbk-lab
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