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analogAIs structuralalignment [23 articles]

Neue Publikationen in analogAIs Bibliothek eingetragen unter dem Bezeichner: structuralalignment. You can also see everyone's structuralalignment.
  • notes Gaps in structurally similar proteins: towards improvement of multiple sequence alignment.
    Proteins, Vol. 54, No. 1. (1 January 2004), pp. 71-87.
    by JO Wrabl, NV Grishin
    posted to protein-sequence sequencealignment structuralalignment by analogAI on 2006-06-29 05:45:12 as **** along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
  • FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257.
    by J Shi, TL Blundell, K Mizuguchi
    posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-12-03 00:21:11 as ** along with 6 people and 1 group miguel bicko massivemayhem medic0747 sebk TOchi OPIG
  • notes Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.
    Proteins, Vol. 14, No. 2. (October 1992), pp. 309-323.
    by RB Russell, GJ Barton
    posted to protein-structure structuralalignment by analogAI on 2005-12-01 01:07:46 as ***** along with 2 people chad_davis jefferlyemerson
  • Multiple structural alignment by secondary structures: algorithm and applications.
    Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507.
    by O Dror, H Benyamini, R Nussinov, HJ Wolfson
    posted to protein-structure structuralalignment by analogAI on 2005-12-01 00:02:06 as ** along with 2 people ziquje dimka
  • notes A method for simultaneous alignment of multiple protein structures.
    Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156.
    by M Shatsky, R Nussinov, HJ Wolfson
    posted to protein-structure structuralalignment by analogAI on 2005-11-28 05:22:26 as ***** along with 3 people nachtalp j3xucite carlescorbi
  • Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming.
    J Mol Biol, Vol. 212, No. 2. (20 March 1990), pp. 403-428.
    by A Sali, TL Blundell
    posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-24 01:00:06 as ***
  • An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 691-711.
    by AS Yang, B Honig
    posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-23 23:47:02 as *****
  • An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence.
    J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 679-689.
    by AS Yang, B Honig
    posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:46:13 as **** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678.
    by AS Yang, B Honig
    posted to protein-structure structuralalignment by analogAI on 2005-11-23 23:40:39 as **** along with 2 people and 2 groups ana dimka structural_bioinformatics Bioinformatics
  • Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function
    Nucl. Acids Res., Vol. 32, No. 9. (20 May 2004), pp. 2838-2843.
    by Nalin C Goonesekere, Byungkook Lee
    posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:43:01 as **** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • notes Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
    Protein Eng, Vol. 11, No. 9. (September 1998), pp. 739-747.
    by IN Shindyalov, PE Bourne
    posted to protein-structure structuralalignment by analogAI on 2005-11-22 02:42:03 as ***** along with 6 people and 2 groups nigham jwm dgront rabio siebertm Inchoate Radiation_Damage Stressosome
  • MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
    Protein Sci, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621.
    by Angel R Ortiz, Charlie E Strauss, Osvaldo Olmea
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:09:13 as **** along with 4 people and 2 groups ana iakes dimka jwm structural_bioinformatics Bioinformatics
  • Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1010-1019.
    by Yuan Xin, Bystroff Christopher
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 02:07:51 as ****
  • Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
    J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188.
    by R Kolodny, P Koehl, M Levitt
    posted to protein-structure review-article structuralalignment by analogAI on 2005-11-19 01:53:49 as read along with 5 people and 2 groups reyez karbak ana lulab balajis structural_bioinformatics Bioinformatics
  • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2256-2268.
    by Krissinel, , Henrick,
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:51:43 as ***** along with 3 people and 4 groups barry jwm robert structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • LGA: A method for finding 3D similarities in protein structures.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374.
    by A Zemla
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:42:19 as ***** along with 3 people and 2 groups karbak ana vavi structural_bioinformatics Bioinformatics
  • Protein structure alignment using environmental profiles
    Protein Eng., Vol. 13, No. 8. (1 August 2000), pp. 535-543.
    by Jongsun Jung, Byungkook Lee
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:33:31 as *****
  • Protein structure comparison using the markov transition model of evolution.
    Proteins, Vol. 41, No. 1. (1 October 2000), pp. 108-122.
    by T Kawabata, K Nishikawa
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:28:02 as ***** along with 1 person nigham
  • Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.
    Protein Sci, Vol. 13, No. 7. (July 2004), pp. 1865-1874.
    by VA Ilyin, A Abyzov, CM Leslin
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:19:04 as ***** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • notes Multiple flexible structure alignment using partial order graphs
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2362-2369.
    by Yuzhen Ye, Adam Godzik
    posted to protein-structure structuralalignment by analogAI on 2005-11-19 01:15:26 as *****
  • 3DCoffee: combining protein sequences and structures within multiple sequence alignments.
    J Mol Biol, Vol. 340, No. 2. (2 July 2004), pp. 385-395.
    by O O'Sullivan, K Suhre, C Abergel, DG Higgins, C Notredame
    posted to protein-structure sequencealignment structuralalignment by analogAI on 2005-11-16 19:09:35 as * along with 4 people and 4 groups nickolay edvin ana jwm structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • A new progressive-iterative algorithm for multiple structure alignment
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263.
    by Dmitry Lupyan, Alejandra Leo-Macias, Angel R Ortiz
    posted to protein-structure structuralalignment by analogAI on 2005-11-12 01:27:23 as *** along with 3 people and 2 groups ana dimka insectopalo structural_bioinformatics Bioinformatics
  • notes MultiProt - A Multiple Protein Structural Alignment Algorithm
    Vol. 2452 (2002), pp. 235-250.
    by Maxim Shatsky, Ruth Nussinov, Haim J Wolfson
    posted to protein-structure structuralalignment by analogAI on 2005-11-12 00:00:45 as ****
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