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alexgs protein_structure [55 articles]

Neue Publikationen in alexgs Bibliothek eingetragen unter dem Bezeichner: protein_structure. You can also see everyone's protein_structure.
  • Protein interactions from complexes: a structural perspective.
    Comp Funct Genomics (2007)
    by L Hakes, DL Robertson, SG Oliver, SC Lovell
    posted to networks ppi protein_structure by alexg on 2007-07-30 07:33:04 as ***** along with 2 people marti bicko
  • E-MSD: improving data deposition and structure quality.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Tagari, J Tate, GJ Swaminathan, R Newman, A Naim, W Vranken, A Kapopoulou, A Hussain, J Fillon, K Henrick, S Velankar
    posted to protein_structure by alexg on 2006-01-05 02:25:16 as read
  • The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by F Pearl, A Todd, I Sillitoe, M Dibley, O Redfern, T Lewis, C Bennett, R Marsden, A Grant, D Lee, A Akpor, M Maibaum, A Harrison, T Dallman, G Reeves, I Diboun, S Addou, S Lise, C Johnston, A Sillero, J Thornton, C Orengo
    posted to protein_structure by alexg on 2005-12-18 06:08:26 as read along with 3 people and 2 groups barry tjimenez chrn structural_bioinformatics Bioinformatics
  • Avian haemoglobins and structural basis of high affinity for oxygen: structure of bar-headed goose aquomet haemoglobin.
    Acta Crystallogr D Biol Crystallogr, Vol. 57, No. Pt 6. (June 2001), pp. 775-783.
    by XZ Liu, SL Li, H Jing, YH Liang, ZQ Hua, GY Lu
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:54:25 as read
  • The crystal structure of bar-headed goose hemoglobin in deoxy form: the allosteric mechanism of a hemoglobin species with high oxygen affinity.
    J Mol Biol, Vol. 313, No. 1. (12 October 2001), pp. 123-137.
    by Y Liang, Z Hua, X Liang, Q Xu, G Lu
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:53:46 as read
  • Structural studies of the streptavidin binding loop.
    Protein Sci, Vol. 6, No. 6. (June 1997), pp. 1157-1166.
    by S Freitag, I Le Trong, L Klumb, PS Stayton, RE Stenkamp
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:46:50 as read
  • Structure of the complex of bovine pancreatic phospholipase A2 with a transition-state analogue.
    Acta Crystallogr D Biol Crystallogr, Vol. 54 ( Pt 3) (1 May 1998), pp. 334-341.
    by K Sekar, A Kumar, X Liu, MD Tsai, MH Gelb, M Sundaralingam
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:45:03 as read
  • 1.72 A resolution refinement of the trigonal form of bovine pancreatic phospholipase A2.
    Acta Crystallogr D Biol Crystallogr, Vol. 54 ( Pt 3) (1 May 1998), pp. 342-346.
    by K Sekar, C Sekharudu, MD Tsai, M Sundaralingam
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:44:28 as read
  • Complex of Burkholderia cepacia lipase with transition state analogue of 1-phenoxy-2-acetoxybutane: biocatalytic, structural and modelling study.
    Eur J Biochem, Vol. 268, No. 14. (July 2001), pp. 3964-3973.
    by M Luić, S Tomić, I Lescić, E Ljubović, D Sepac, V Sunjić, L Vitale, W Saenger, B Kojic-Prodić
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:41:31 as read
  • The open conformation of a Pseudomonas lipase.
    Structure, Vol. 5, No. 2. (15 February 1997), pp. 187-202.
    by JD Schrag, Y Li, M Cygler, D Lang, T Burgdorf, HJ Hecht, R Schmid, D Schomburg, TJ Rydel, JD Oliver, LC Strickland, CM Dunaway, SB Larson, J Day, A McPherson
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:38:49 as read
  • Structural basis for inhibition of human PNP by immucillin-H.
    Biochem Biophys Res Commun, Vol. 309, No. 4. (3 October 2003), pp. 917-922.
    by W Filgueira de Azevedo, F Canduri, D Marangoni dos Santos, JH Pereira, MV Dias, RG Silva, MA Mendes, LA Basso, MS Palma, DS Santos
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:36:20 as read
  • Crystal structure of human purine nucleoside phosphorylase at 2.3A resolution.
    Biochem Biophys Res Commun, Vol. 308, No. 3. (29 August 2003), pp. 545-552.
    by WF de Azevedo, F Canduri, DM dos Santos, RG Silva, JS de Oliveira, LP de Carvalho, LA Basso, MA Mendes, MS Palma, DS Santos
    posted to entropy_enthalpy_compensation protein_structure by alexg on 2005-12-18 05:34:33 as read
  • A systems biology perspective on protein structural dynamics and signal transduction.
    Curr Opin Struct Biol, Vol. 15, No. 1. (February 2005), pp. 23-30.
    by F Rousseau, J Schymkowitz
    posted to allostery protein_structure systems_biology by alexg on 2005-11-28 09:48:47 as ***** along with 6 people lna eweaver dgront choonpeng ruvido jlh64
  • Second-sphere electrostatic effects in the active site of glutathione S-transferase. Observation of an on-face hydrogen bond between the side chain of threonine 13 and the .pi.-cloud of tyrosine 6 and its influence on catalysis
    Journal of the American Chemical Society, Vol. 115, No. 17. (1993), pp. 7910-7911.
    by Suxing Liu, Xinhua Ji, Gary L Gilliland, Walter J Stevens, Richard N Armstrong
    posted to catalysis enzyme protein_structure by alexg on 2005-11-03 11:03:02 as read
  • Transition state stabilization by general acid catalysis, water expulsion, and enzyme reorganization in Medicago savita chalcone isomerase.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2730-2735.
    by S Hur, ZE Newby, TC Bruice
    posted to catalysis enzyme protein_structure by alexg on 2005-11-01 17:18:30 as *****
  • Role of hydrogen bonds in the reaction mechanism of chalcone isomerase.
    Biochemistry, Vol. 41, No. 16. (23 April 2002), pp. 5168-5176.
    by JM Jez, ME Bowman, JP Noel
    posted to catalysis enzyme hydrogen_bonds pka protein_structure by alexg on 2005-11-01 17:07:57 as read
  • Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.
    IUBMB Life, Vol. 53, No. 2. (February 2002), pp. 85-98.
    by TK Harris, GJ Turner
    posted to catalysis enzyme pka protein_structure by alexg on 2005-10-27 15:27:36 as read
  • The protein structure prediction problem could be solved using the current PDB library.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to protein_structure structure_prediction by alexg on 2005-10-24 13:55:16 as ** along with 9 people and 3 groups karbak iakes vavi marcius j3xucite kracher schuylrp jfmuggs neils BioinfoCIPF Immunoinformatics SGU-CIPF
  • Evolutionary plasticity of protein families: Coupling between sequence and structure variation
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (23 September 2005), pp. 535-544.
    by Anna R Panchenko, Yuri I Wolf, Larisa A Panchenko, Thomas Madej
    posted to evolution protein_structure by alexg on 2005-10-24 13:19:34 as ** along with 4 people and 3 groups marcius gbart sobolevnrm insectopalo BioinfoCIPF SGU-CIPF baker-group
  • Fragnostic: walking through protein structure space.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by I Friedberg, A Godzik
    posted to protein_structure by alexg on 2005-10-24 11:11:19 as **** along with 7 people and 4 groups ana barry pansapiens aalibes Einat marcius eweaver structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.
    Protein Sci, Vol. 6 (1997), pp. 2308-23.
    by AC Wallace, N Borkakoti, JM Thornton
    posted to csa protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases.
    Protein Sci, Vol. 5 (1996), pp. 1001-13.
    by AC Wallace, RA Laskowski, JM Thornton
    posted to csa protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Evolution of function in protein superfamilies, from a structural perspective.
    J Mol Biol, Vol. 307 (2001), pp. 1113-43.
    by AE Todd, CA Orengo, JM Thornton
    posted to evolution function protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Protein folds, functions and evolution.
    J Mol Biol, Vol. 293 (1999), pp. 333-42.
    by JM Thornton, CA Orengo, AE Todd, FM Pearl
    posted to evolution function protein_structure by alexg on 2005-10-24 10:52:49 as read
  • The geometries of interacting arginine-carboxyls in proteins.
    FEBS Lett, Vol. 224 (1987), pp. 161-71.
    by J Singh, JM Thornton, M Snarey, SF Campbell
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Carboxyl-carboxylate interactions in proteins.
    Nature, Vol. 295 (1982), pp. 79-80.
    by L Sawyer, MN James
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.
    J Mol Biol, Vol. 279 (1998), pp. 1211-27.
    by RB Russell
    posted to evolution protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Data Mining the Protein Data Bank: Residue Interactions.
    Proteins, Vol. 49 (2002), pp. 510-528.
    by TJ Oldfield
    posted to protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Non-randomness in side-chain packing: the distribution of interplanar angles.
    Proteins, Vol. 29 (1997)
    by JB Mitchell, RA Laskowski, JM Thornton
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Validation of protein models derived from experiment.
    Curr Opin Struct Biol, Vol. 8 (1998), pp. 631-9.
    by RA Laskowski, MW Macarthur, JM Thornton
    posted to crystallography protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Protein clefts in molecular recognition and function.
    Protein Sci, Vol. 5 (1996), pp. 2438-52.
    by RA Laskowski, NM Luscombe, MB Swindells, JM Thornton
    posted to enzyme protein_structure by alexg on 2005-10-24 10:52:49 as read
  • The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework.
    Nucleic Acids Res, Vol. 28 (2000), pp. 1665-75.
    by WG Krebs, M Gerstein
    posted to conformational_change protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Recognition of spatial motifs in protein structures.
    J Mol Biol, Vol. 285 (1999), pp. 1887-97.
    by GJ Kleywegt
    posted to protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Correlation of structure and function in enzyme action.
    Science, Vol. 142 (1963), pp. 1533-41.
    by DE Koshland
    posted to catalysis enzyme protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Anatomy of a conformational change: hinged "lid" motion of the triosephosphate isomerase loop.
    Science, Vol. 249 (1990), pp. 1425-8.
    by D Joseph, GA Petsko, M Karplus
    posted to catalysis conformational_change enzyme protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Hydrogen bond stereochemistry in protein structure and function.
    J Mol Biol, Vol. 215 (1990), pp. 457-71.
    by JA Ippolito, RS Alexander, DW Christianson
    posted to hydrogen_bonds protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Errors in protein structures.
    Nature, Vol. 381 (1996)
    by RW Hooft, G Vriend, C Sander, EE Abola
    posted to crystallography protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Mapping the protein universe.
    Science, Vol. 273 (1996), pp. 595-603.
    by L Holm, C Sander
    posted to protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Multiple conformational changes in enzyme catalysis.
    Biochemistry, Vol. 41 (2002), pp. 8221-8.
    by GG Hammes
    posted to catalysis conformational_change enzyme protein_structure by alexg on 2005-10-24 10:52:49 as read
  • A database of macromolecular motions.
    Nucleic Acids Res, Vol. 26 (1998), pp. 4280-90.
    by M Gerstein, W Krebs
    posted to conformational_change protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Structural mechanisms for domain movements in proteins.
    Biochemistry, Vol. 33 (1994), pp. 6739-49.
    by M Gerstein, AM Lesk, C Chothia
    posted to conformational_change protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies.
    Annu Rev Biochem, Vol. 70 (2001), pp. 209-46.
    by JA Gerlt, PC Babbitt
    posted to enzyme evolution protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Proteins. One thousand families for the molecular biologist.
    Nature, Vol. 357 (1992), pp. 543-4.
    by C Chothia
    posted to evolution protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Geometry of interaction of metal ions with histidine residues in protein structures.
    Protein Eng, Vol. 4 (1990), pp. 57-63.
    by P Chakrabarti
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Geometry of interplanar residue contacts in protein structures.
    Proc Natl Acad Sci U S A, Vol. 91 (1994)
    by L Brocchieri, S Karlin
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • C-H...pi-interactions in proteins.
    J Mol Biol, Vol. 307 (2001), pp. 357-77.
    by M Brandl, MS Weiss, A Jabs, J Sihnel, R Hilgenfeld
    posted to protein_structure residue_interactions by alexg on 2005-10-24 10:52:49 as read
  • Structure of hen egg-white lysozyme. A three-dimensional Fourier synthesis at 2 Angstrom resolution.
    Nature, Vol. 206 (1965), pp. 757-61.
    by CC Blake, DF Koenig, GA Mair, AC North, DC Phillips, VR Sarma
    posted to crystallography enzyme historic protein_structure by alexg on 2005-10-24 10:52:49 as read
  • An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.
    Bioinformatics, Vol. 19 (2003), pp. 1644-9.
    by JA Barker, JM Thornton
    posted to protein_structure templates by alexg on 2005-10-24 10:52:49 as read
  • Space-filling models of kinase clefts and conformation changes.
    Science, Vol. 204 (1979), pp. 375-80.
    by CM Anderson, FH Zucker, TA Steitz
    posted to conformational_change historic protein_structure by alexg on 2005-10-24 10:52:49 as read
  • Analysis of zinc binding sites in protein crystal structures.
    Protein Sci, Vol. 7 (1998), pp. 1700-16.
    by IL Alberts, K Nadassy, SJ Wodak
    posted to protein_structure by alexg on 2005-10-24 10:52:49 as read
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