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alexgs networks [41 articles]

Neue Publikationen in alexgs Bibliothek eingetragen unter dem Bezeichner: networks. You can also see everyone's networks.
  • Protein interactions from complexes: a structural perspective.
    Comp Funct Genomics (2007)
    by L Hakes, DL Robertson, SG Oliver, SC Lovell
    posted to networks ppi protein_structure by alexg on 2007-07-30 07:33:04 as ***** along with 2 people marti bicko
  • Accelerating, hyperaccelerating, and decelerating networks.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 1 Pt 2. (July 2005)
    by MJ Gagen, JS Mattick
    posted to networks by alexg on 2007-07-30 05:36:29 as *****
  • RNA: Networks & Imaging.
    Mol Syst Biol, Vol. 2 (2006)
    by M Kenzelmann, K Rippe, JS Mattick
    posted to ncrna networks by alexg on 2007-07-30 05:34:10 as *****
  • Effect of dataset selection on the topological interpretation of protein interaction networks.
    BMC Genomics, Vol. 6 (2005)
    by L Hakes, DL Robertson, SG Oliver
    posted to networks systems_biology by alexg on 2007-07-30 05:19:47 as **
  • Chemical combination effects predict connectivity in biological systems
    Mol Syst Biol, Vol. 3 (27 February 2007), 80.
    by Joseph Lehar, Grant R Zimmermann, Andrew S Krueger, Raymond A Molnar, Jebediah T Ledell, Adrian M Heilbut, Glenn F Short, Leanne C Giusti, Garry P Nolan, Omar A Magid, Margaret S Lee, Alexis A Borisy, Brent R Stockwell, Curtis T Keith
    posted to networks systems_biology by alexg on 2007-04-24 07:49:11 as *** along with 4 people aheilbut jjray pbellec daed
  • The metabolic world of Escherichia coli is not small.
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547.
    by M Arita
    posted to metabolism networks systems_biology by alexg on 2006-12-26 02:03:08 as ** along with 9 people and 3 groups camster PeterCollins riomenajang barry tny azuma dylan77 Ema hryk dbk-lab structural_bioinformatics Bioinformatics
  • Structure and function of negative feedback loops at the interface of genetic and metabolic networks.
    Nucleic Acids Res, Vol. 34, No. 8. (2006), pp. 2455-2462.
    by S Krishna, AM Andersson, S Semsey, K Sneppen
    posted to net_paper networks by alexg on 2006-08-18 02:57:38 as ** along with 2 people entropy comb
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to net_paper networks by alexg on 2006-08-18 02:30:17 as ** along with 15 people and 9 groups diamantis shivaram yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina ellakat iris_2001 Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Functional and topological characterization of protein interaction networks.
    Proteomics, Vol. 4, No. 4. (April 2004), pp. 928-942.
    by SH Yook, ZN Oltvai, AL Barabási
    posted to net_paper networks by alexg on 2006-08-18 02:09:54 as ** along with 6 people snuppepuppan textoris gabrielr grahamc iris_2001 carlk
  • Emergence of scaling in random networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by AL Barabasi, R Albert
    posted to net_paper networks by alexg on 2006-08-18 02:07:25 as ** along with 21 people and 8 groups sanmay camster korakot ldfu KAllendoerfer aalibes ChaTo shivaram mbliemel yish balicea matteodellamico yoh merazzle maqbes cerkut timflutre ruvido boila koles thecolourblue Philosophy_of_Information dbk-lab Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni contact-id
  • Design principles of a bacterial signalling network
    Nature, Vol. 438, No. 7067., pp. 504-507.
    by Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik
    posted to networks by alexg on 2006-05-22 06:57:07 as ** along with 13 people rklancer abhik monod chrn jmeppley bayesian ryang balicea wnpx balabu entropy comb jjray
  • Robustness in simple biochemical networks.
    Nature, Vol. 387 (1997), pp. 913-917.
    by N Barkal, S Leibler
    posted to networks by alexg on 2006-04-13 06:18:02 as ****
  • Functional cartography of complex metabolic networks
    Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900.
    by Roger Guimera, LAN Luis
    posted to metabolism networks by alexg on 2006-02-06 04:23:53 as ** along with 17 people and 4 groups pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis eweaver tny wnpx cjeans kdang carlk RobMills Diego_Prada marcio streptomyces dbk-lab kdl Bioinformatics
  • Structural comparison of metabolic networks in selected single cell organisms.
    BMC Bioinformatics, Vol. 6, No. 1. (2005), 8.
    by D Zhu, ZS Qin
    posted to metabolism networks pathways by alexg on 2006-02-06 04:20:03 as ** along with 2 people Borelli tny
  • Biological networks: the tinkerer as an engineer.
    Science, Vol. 301, No. 5641. (26 September 2003), pp. 1866-1867.
    by U Alon
    posted to networks by alexg on 2006-02-06 01:17:21 as ** along with 8 people and 2 groups monod Borelli ddahlem shivakumar3_14 cmm lshaw rebeccamancy Ema FAB-lab ColDyn
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to networks by alexg on 2006-01-24 02:01:41 as **** along with 21 people and 6 groups camster barry dragonrez bicko lfriedl chad_davis j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli.
    Bioinformatics, Vol. 21, No. Suppl 2. (1 September 2005), pp. 190-196.
    by E Simão, E Remy, D Thieffry, C Chaouiya
    posted to metabolism net_paper networks pathways by alexg on 2005-12-07 02:14:54 as *****
  • A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Schwartz, M Kanehisa
    posted to metabolism networks pathways by alexg on 2005-12-07 02:13:46 as **
  • Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data.
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4209-4215.
    by F Boyer, A Morgat, L Labarre, J Pothier, A Viari
    posted to graph_theory networks by alexg on 2005-12-07 02:12:53 as ** along with 1 person Neeperando
  • FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 261-269.
    by S Klamt, J Stelling, M Ginkel, ED Gilles
    posted to metabolism networks by alexg on 2005-12-06 00:41:33 as read along with 2 people and 2 groups balicea carmaus dIEMoSIRIS MoSi-Rostock
  • Exploring the diversity of complex metabolic networks.
    Bioinformatics (4 January 2005)
    by Vassily Hatzimanikatis, Chunhui Li, Justin A A Ionita, Christopher S S Henry, Matthew D D Jankowski, Linda J J Broadbelt
    posted to metabolism networks by alexg on 2005-12-06 00:41:03 as ** along with 5 people and 1 group greg betainverse kuhn jdiggans shung spliceml
  • The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.
    Eur J Biochem, Vol. 271, No. 14. (July 2004), pp. 2905-2922.
    by HG Holzhütter
    posted to flux_balance_analysis metabolism networks by alexg on 2005-12-06 00:39:27 as ** along with 3 people and 1 group sobolevnrm pmendes JeremyZucker baker-group
  • Minimal cut sets in biochemical reaction networks.
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 226-234.
    by S Klamt, ED Gilles
    posted to metabolism networks by alexg on 2005-12-06 00:38:57 as ** along with 3 people tmmurali AbnerCYH jiny
  • The connectivity structure, giant strong component and centrality of metabolic networks.
    Bioinformatics, Vol. 19, No. 11. (22 July 2003), pp. 1423-1430.
    by HW Ma, AP Zeng
    posted to metabolism networks by alexg on 2005-12-06 00:38:15 as ** along with 2 people mague gcalda
  • Network-based regulatory pathways analysis.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2056-2066.
    by M Xiong, J Zhao, H Xiong
    posted to metabolism networks by alexg on 2005-12-06 00:37:43 as ** along with 1 person balicea
  • The evolution of connectivity in metabolic networks.
    PLoS Biol, Vol. 3, No. 7. (July 2005), e228.
    by T Pfeiffer, OS Soyer, S Bonhoeffer
    posted to metabolism networks by alexg on 2005-12-06 00:37:01 as *** along with 8 people and 1 group wilbur jameswasmuth westoll bjorns balicea tny livingthingdan Ema livingthing
  • Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.
    Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1870-1876.
    by HW Ma, XM Zhao, YJ Yuan, AP Zeng
    posted to metabolism net_paper networks by alexg on 2005-12-06 00:35:54 as *** along with 1 person fishtank
  • Spontaneous evolution of modularity and network motifs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 39. (20 September 2005), pp. 13773-13778.
    by Nadav Kashtan, Uri Alon
    posted to network_motif networks systems_biology by alexg on 2005-10-24 15:18:46 as ** along with 17 people and 6 groups ocs saket mcphee marimo monod Borelli i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
  • Structure and function of the feed-forward loop network motif.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985.
    by S Mangan, U Alon
    posted to network_motif networks by alexg on 2005-10-24 15:17:36 as ** along with 13 people and 3 groups kaarsinogen camster rklancer korakot zqshen jstajic jjray balicea ddahlem jtaylor gcalda marck hannahrajasingh Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to net_paper networks by alexg on 2005-10-24 15:14:15 as ** along with 35 people and 11 groups mtagaya camster snuppepuppan dbk greg jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin hryk streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
  • Analyzing cellular biochemistry in terms of molecular networks.
    Annu Rev Biochem, Vol. 73 (2004), pp. 1051-1087.
    by Y Xia, H Yu, R Jansen, M Seringhaus, S Baxter, D Greenbaum, H Zhao, M Gerstein
    posted to metabolism networks by alexg on 2005-10-24 15:13:31 as ** along with 1 person cerca
  • Constructing an enzyme-centric view of metabolism.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2050-2055.
    by AB Horne, TC Hodgman, HD Spence, AR Dalby
    posted to enzyme metabolism networks by alexg on 2005-10-24 15:12:37 as ** along with 2 people eweaver tny
  • Metabolic networks: enzyme function and metabolite structure
    Current Opinion in Structural Biology, Vol. 14, No. 3. (June 2004), pp. 300-306.
    by Vassily Hatzimanikatis, Chunhui Li, Justin A Ionita, Linda J Broadbelt
    posted to enzyme metabolism networks by alexg on 2005-10-24 15:12:08 as ** along with 3 people kuhn eweaver tny
  • The KEGG resource for deciphering the genome.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Kanehisa, S Goto, S Kawashima, Y Okuno, M Hattori
    posted to database metabolism networks by alexg on 2005-10-24 15:10:31 as ** along with 8 people and 1 group irenas BragilMassoud lfriedl nuke2005 bioinfo wnpx Garamonfok shung kdl
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to net_paper networks by alexg on 2005-10-24 15:07:06 as ** along with 45 people and 8 groups mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
  • Superfamilies of evolved and designed networks.
    Science, Vol. 303, No. 5663. (5 March 2004), pp. 1538-1542.
    by R Milo, S Itzkovitz, N Kashtan, R Levitt, S Shen-Orr, I Ayzenshtat, M Sheffer, U Alon
    posted to networks by alexg on 2005-10-24 14:40:13 as read along with 20 people and 7 groups kaarsinogen heliopais galyardt ChaTo lfriedl yish balicea ssb ddahlem cmm j3xucite donade bigbossman gurkanbebek shenorr ltabourier michaelmampaey zibuyu tnhh karfunkel kdl mathgamespatterns dtl vds-arg eni FAB-lab ADMiRes
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to metabolism net_paper networks by alexg on 2005-10-24 14:39:38 as ** along with 22 people and 2 groups camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina shikin dylanwalker dbk-lab kdl
  • Network analysis of metabolic enzyme evolution in Escherichia coli.
    BMC Bioinformatics, Vol. 5 (18 February 2004)
    by S Light, P Kraulis
    posted to enzyme evolution metabolism networks by alexg on 2005-10-24 14:38:59 as ** along with 7 people and 1 group renatomilani kuhn eweaver tny azuma livingthingdan pekrau livingthing
  • Genomic analysis of regulatory network dynamics reveals large topological changes.
    Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312.
    by NM Luscombe, MM Babu, H Yu, M Snyder, SA Teichmann, M Gerstein
    posted to networks by alexg on 2005-10-24 14:34:46 as ** along with 22 people and 7 groups behindtherabbit vertikalist camster snuppepuppan hununu icases lna lfriedl nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank cjeans rebeccamancy faion carlk BTS-PT-AS-CS dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc
  • Comparison of network-based pathway analysis methods.
    Trends Biotechnol, Vol. 22, No. 8. (August 2004), pp. 400-405.
    by JA Papin, J Stelling, ND Price, S Klamt, S Schuster, BO Palsson
    posted to metabolism networks pathways by alexg on 2005-10-24 14:34:03 as *** along with 2 people and 1 group camster madhadron dbk-lab
  • Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.
    Trends Biochem Sci, Vol. 29, No. 12. (December 2004), pp. 641-647.
    by JA Papin, JL Reed, BO Palsson
    posted to metabolism networks pathways by alexg on 2005-10-24 14:33:36 as ** along with 2 people and 3 groups camster korakot Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
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