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adepaces library [723 articles]

Neue Artikel in adepaces Bibliothek.
  • An auxin-driven polarized transport model for phyllotaxis.
    Proc Natl Acad Sci U S A, Vol. 103, No. 5. (31 January 2006), pp. 1633-1638.
    by H Jönsson, MG Heisler, BE Shapiro, EM Meyerowitz, E Mjolsness
    posted to cshl_suggestions by adepace on 2008-06-13 19:09:57 as ** along with 6 people and 2 groups smithco krissp sstoma braingrind mhucka virtualplants_admin Plant-Tissue-Simulation VirtualPlants
  • Imaging in systems biology.
    Cell, Vol. 130, No. 5. (7 September 2007), pp. 784-795.
    by SG Megason, SE Fraser
    posted to cshl_suggestions by adepace on 2008-06-13 17:37:51 as ** along with 2 people jyuh lechristophe
  • A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 364-374.
    by CC Fowlkes, CL Hendriks, SV Keränen, GH Weber, O Rübel, MY Huang, S Chatoor, AH DePace, L Simirenko, C Henriquez, A Beaton, R Weiszmann, S Celniker, B Hamann, DW Knowles, MD Biggin, MB Eisen, J Malik
    posted to cshl_suggestions by adepace on 2008-06-13 17:36:10 as ** along with 2 people cite0000 Doug
  • A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis
    Curr Biol, Vol. 16, No. 4. (Feb 2006), pp. 345-58.
    by Olivier Tassy, Fabrice Daian, Clare Hudson, Vincent Bertrand, Patrick Lemaire
    posted to urochordata models-biological embryonic-induction databases-factual cshl_suggestions cleavage-stage-ovum cell-size cell-shape cell-division blastomeres animals by adepace on 2008-06-13 17:33:18 as read
  • Integrating technologies for comparing 3D gene expression domains in the developing chick limb
    Dev Biol, Vol. 317, No. 1. (May 2008), pp. 13-23.
    by Malcolm E Fisher, Allyson K Clelland, Andrew Bain, Richard A Baldock, Paula Murphy, Helen Downie, Cheryll Tickle, Duncan R Davidson, Richard A Buckland
    posted to tomography technology in-situ-hybridization genomics gene-expression-regulation-developmental extremities databases-as-topic cshl_suggestions chick-embryo animals by adepace on 2008-06-13 17:33:17 as read
  • Neural Lineages of the Drosophila Brain: A Three-Dimensional Digital Atlas of the Pattern of Lineage Location and Projection at the Late Larval Stage
    Journal of Neuroscience, Vol. 26, No. 20. (May 2006)
    by Wayne Pereanu, Volker Hartenstein
    posted to cshl_suggestions by adepace on 2008-06-13 17:33:17 as read
  • Confocal quantification of cis-regulatory reporter gene expression in living sea urchin
    Dev Biol, Vol. 299, No. 2. (Nov 2006), pp. 543-50.
    by Sagar Damle, Bridget Hanser, Eric H Davidson, Scott E Fraser
    posted to sea-urchins microscopy-confocal green-fluorescent-proteins genes-reporter gastrula embryo-nonmammalian cshl_suggestions animals by adepace on 2008-06-13 17:33:17 as read
  • Systematic gene expression mapping clusters nuclear receptors according to their function in the brain
    Cell, Vol. 131, No. 2. (Oct 2007), pp. 405-18.
    by Fran\c C Gofflot, Nathalie Chartoire, Laurent Vasseur, Sami Heikkinen, Doulaye Dembele, Julie Le Merrer, Johan Auwerx
    posted to transcription-factors reverse-transcriptase-polymerase-chain-reaction receptors-cytoplasmic-and-nuclear mice-inbred-c57bl mice male learning in-situ-hybridization hypothalamus hippocampus gene-expression-profiling feeding-behavior databases-nucleic-acid cshl_suggestions animals by adepace on 2008-06-13 17:33:17 as read
  • Regulatory pathway analysis by high-throughput in situ hybridization
    PLoS Genetics, Vol. 3, No. 10. (Oct 2007), pp. 1867-83.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo A Bolado, Gregor Eichele
    posted to time-factors repressor-proteins paired-box-transcription-factors oligonucleotide-array-sequence-analysis models-genetic mice-inbred-dba mice-inbred-c57bl mice in-situ-hybridization homeodomain-proteins genetic-techniques gene-expression-regulation gene-expression-profiling eye-proteins dna cshl_suggestions cluster-analysis binding-sites animals by adepace on 2008-06-13 17:33:16 as read
  • Automated cell lineage tracing in Caenorhabditis elegans
    Proc Natl Acad Sci USA, Vol. 103, No. 8. (Feb 2006), pp. 2707-12.
    by Zhirong Bao, John I Murray, Thomas Boyle, Siew L Ooi, Matthew J Sandel, Robert H Waterston
    posted to recombinant-fusion-proteins microscopy-fluorescence histones green-fluorescent-proteins cshl_suggestions cell-lineage caenorhabditis-elegans automatic-data-processing animals by adepace on 2008-06-13 17:33:16 as read
  • Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
    Dev Biol, Vol. 314, No. 1. (Feb 2008), pp. 93-9.
    by Zhongying Zhao, Thomas J Boyle, Zhirong Bao, John I Murray, Barbara Mericle, Robert H Waterston
    posted to species-specificity signal-transduction phylogeny evolution embryo-nonmammalian cshl_suggestions cell-movement cell-lineage cell-death caenorhabditis-elegans caenorhabditis animals by adepace on 2008-06-13 17:33:16 as read
  • High-throughput in vivo analysis of gene expression in Caenorhabditis elegans
    PLoS Biol, Vol. 5, No. 9. (Sep 2007)
    by Rebecca H Newbury, Ryan Viveiros, Robert Johnsen, Allan Mah, Dina Anastas, Lily Fang, Erin Halfnight, David Lee, John Lin, Adam Lorch, Sheldon Mckay, Mark H Okada, Jie Pan, Ana K Schulz, Domena Tu, Kim Wong, Z Zhao, Andrey Alexeyenko, Thomas Burglin, Eric Sonnhammer, Ralf Schnabel, Steven J Jones, Marco A Marra, David L Baillie, Donald G Moerman
    posted to tissue-distribution recombinant-fusion-proteins green-fluorescent-proteins gene-expression-regulation-developmental gene-expression-profiling cshl_suggestions caenorhabditis-elegans base-sequence animals age-factors by adepace on 2008-06-13 17:33:15 as read
  • Functional genomics of cactus host shifts in Drosophila mojavensis
    Molecular Ecology, Vol. 15, No. 14. (1 December 2006), pp. 4635-43.
    by LM Matzkin, TD Watts, BG Bitler, CA Machado, TA Markow
    posted to up-regulation insect host-parasite-relations genomics genes gene-expression-profiling file-import-08-06-05 drosophila cactaceae animals by adepace on 2008-06-05 16:02:31 as **
  • Dynamic control of positional information in the early Drosophila embryo
    Nature, Vol. 430, No. 6997. (15 July 2004), pp. 368-71.
    by J Jaeger, S Surkova, M Blagov, H Janssens, D Kosman, KN Kozlov, Manu, E Myasnikova, CE Vanario-Alonso, M Samsonova, DH Sharp, J Reinitz
    posted to time-factors rna nonmammalian models messenger gene-expression-regulation file-import-08-06-05 female embryo drosophila-proteins drosophila-melanogaster diffusion developmental body-patterning blastoderm biological animals by adepace on 2008-06-05 16:02:31 as **
  • Evolution of eukaryotic transcription circuits
    Science, Vol. 319, No. 5871. (27 March 2008), pp. 1797-9.
    by BB Tuch, H Li, AD Johnson
    posted to transcription-genetic transcription-factors regulatory-sequences-nucleic-acid mutation humans gene-regulatory-networks gene-expression-regulation file-import-08-06-05 evolution-molecular dna-binding-proteins animals by adepace on 2008-06-05 16:02:31 as **
  • Primate-specific evolution of an LDLR enhancer
    Genome biology, Vol. 7, No. 8. (1 January 2006), R68.
    by QF Wang, S Prabhakar, Q Wang, AM Moses, S Chanan, M Brown, MB Eisen, JF Cheng, EM Rubin, D Boffelli
    posted to sequence-alignment receptors-ldl primates phylogeny molecular-sequence-data mice humans file-import-08-06-05 evolution-molecular enhancer-elements-genetics dna-primers conserved-sequence computational-biology chromatin-immunoprecipitation cell-line base-sequence animals amino-acid-motifs by adepace on 2008-06-05 16:02:31 as **
  • Analysis and function of transcriptional regulatory elements: insights from Drosophila
    Annu Rev Entomol, Vol. 48 (1 January 2003), pp. 579-602.
    by DN Arnosti
    posted to transcription promoter-regions-genetics phylogeny models male insects insect genomics genetically-modified genetic genes file-import-08-06-05 evolution enhancer-elements-genetics drosophila dna computational-biology animals by adepace on 2008-06-05 16:02:31 as **
  • Macro-evolution of the hairy enhancer in Drosophila species
    The Journal of experimental zoology, Vol. 291, No. 2. (15 August 2001), pp. 175-85.
    by J Kim
    posted to variation-genetics promoter-regions-genetics molecular-sequence-data male gene-expression-regulation file-import-08-06-05 female evolution drosophila animals amino-acid-sequence by adepace on 2008-06-05 16:02:31 as **
  • Transcriptional control in the segmentation gene network of Drosophila
    PLoS biology, Vol. 2, No. 9. (1 September 2004), E271.
    by MD Schroeder, M Pearce, J Fak, H Fan, U Unnerstall, E Emberly, N Rajewsky, ED Siggia, U Gaul
    posted to transcription-factors transcription species-specificity software rna promoter-regions-genetics multigene-family molecular models messenger in-situ-hybridization genome genetic gene-expression-regulation file-import-08-06-05 evolution drosophila-melanogaster drosophila developmental-biology developmental computational-biology chromosome-mapping body-patterning binding-sites animals algorithms by adepace on 2008-06-05 16:02:31 as **
  • Bicoid determines sharp and precise target gene expression in the Drosophila embryo
    Current biology : CB, Vol. 15, No. 21. (8 November 2005), pp. 1888-98.
    by O Crauk, N Dostatni
    posted to trans-activators rna-binding-proteins recombinant-fusion-proteins models in-situ-hybridization immunohistochemistry homeodomain-proteins gene-expression-regulation file-import-08-06-05 drosophila-proteins drosophila developmental body-patterning biological animals by adepace on 2008-06-05 16:02:31 as **
  • Fast-evolving non-coding sequences in the human genome
    Genome biology, Vol. 8, No. 6. (19 June 2007), R118.
    by CP Bird, BE Stranger, M Liu, DJ Thomas, CE Ingle, C Beazley, W Miller, ME Hurles, ET Dermitzakis
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:31 as **
  • Progress & Prospects in Evolutionary Biology : The Drosophila Model
    (1997)
    by J Powell
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:31 as **
  • Regulatory changes underlying expression differences within and between Drosophila species
    Nature genetics, Vol. 40, No. 3. (17 March 2008), pp. 346-350.
    by PJ Wittkopp, BK Haerum, AG Clark
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:31 as **
  • Why are there so many species of herbivorous insects in tropical rainforests?
    Science, Vol. 313, No. 5790. (25 August 2006), pp. 1115-8.
    by V Novotny, P Drozd, SE Miller, M Kulfan, M Janda, Y Basset, GD Weiblen
    posted to tropical-climate trees slovakia population-density phylogeny papua-new-guinea lepidoptera larva insects file-import-08-06-05 feeding-behavior czech-republic climate biodiversity beetles animals by adepace on 2008-06-05 16:02:30 as **
  • Diffusion and scaling during early embryonic pattern formation
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 51. (20 December 2005), pp. 18403-7.
    by T Gregor, W Bialek, de Ruyter, DW Tank, EF Wieschaus
    posted to nonmammalian gene-expression-regulation gene-expression-profiling file-import-08-06-05 embryo drosophila-melanogaster diffusion developmental body-patterning animals by adepace on 2008-06-05 16:02:30 as **
  • A rationale for the enhanceosome and other evolutionarily constrained enhancers
    Current biology : CB, Vol. 17, No. 22. (20 November 2007), pp. R955-7.
    by D Papatsenko, M Levine
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:30 as **
  • Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
    The Quarterly Review of Biology, Vol. 46, No. 2. (1 June 1971), pp. 111-38.
    by RJ Britten, EH Davidson
    posted to rna molecular-biology models-chemical genetic-code file-import-08-06-05 evolution dna base-sequence by adepace on 2008-06-05 16:02:30 as **
  • Frequent gain and loss of functional transcription factor binding sites
    PLoS Comput Biol, Vol. 3, No. 5. (1 May 2007), e99.
    by SW Doniger, JC Fay
    posted to variation-genetics transcription-factors sequence-analysis-dna saccharomyces-cerevisiae-proteins saccharomyces-cerevisiae regulatory-sequences-nucleic-acid protein-binding molecular-sequence-data gene-frequency file-import-08-06-05 evolution-molecular binding-sites base-sequence by adepace on 2008-06-05 16:02:30 as **
  • Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories
    Evolution; international journal of organic evolution, Vol. 59, No. 1. (1 January 2005), pp. 126-37.
    by B Lemos, CD Meiklejohn, M Cáceres, DL Hartl
    posted to variation-genetics selection-genetics rna phenotype pan-troglodytes oligonucleotide-array-sequence-analysis molecular mice messenger liver humans gene-expression-profiling file-import-08-06-05 evolution drosophila-melanogaster brain animals by adepace on 2008-06-05 16:02:30 as **
  • Probing transcription factor dynamics at the single-molecule level in a living cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-4.
    by J Elf, GW Li, XS Xie
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:30 as **
  • Identification of functional transcription factor binding sites using closely related Saccharomyces species
    Genome Res, Vol. 15, No. 5. (1 May 2005), pp. 701-9.
    by SW Doniger, J Huh, JC Fay
    posted to transcription-factors species-specificity sequence-alignment saccharomyces-cerevisiae-proteins saccharomyces repressor-proteins mutation molecular-sequence-data models-genetic genomics gene-expression file-import-08-06-05 evolution-molecular dna-intergenic dna-binding-proteins conserved-sequence computational-biology binding-sites base-sequence amino-acid-motifs by adepace on 2008-06-05 16:02:29 as **
  • Ecological adaptation during incipient speciation revealed by precise gene replacement.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1754-1757.
    by AJ Greenberg, J Moran, JA Coyne, CI Wu
    posted to tech--population_genetics system--dmel key--phenotypic_evolution file-import-08-06-05 by adepace on 2008-06-05 16:02:29 as **
  • Are all DNA binding and transcription regulation by an activator physiologically relevant?
    Mol Cell Biol, Vol. 21, No. 7. (31 March 2001), pp. 2467-74.
    by Q Li, SA Johnston
    posted to transcription-genetic transcription-factors saccharomyces-cerevisiae-proteins saccharomyces-cerevisiae protein-binding molecular-sequence-data genome-fungal gene-expression-regulation-fungal fungal-proteins file-import-08-06-05 dna-binding-proteins base-sequence acetyl-coa-carboxylase by adepace on 2008-06-05 16:02:29 as **
  • Genomic sources of regulatory variation in cis and in trans
    Cell Mol Life Sci, Vol. 62, No. 16. (1 August 2005), pp. 1779-83.
    by PJ Wittkopp
    posted to variation-genetics regulatory-sequences regulator nucleic-acid mutation molecular humans genes gene-expression-regulation file-import-08-06-05 evolution enhancer-elements-genetics animals by adepace on 2008-06-05 16:02:29 as **
  • Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    Genome Res, Vol. 17, No. 12. (1 December 2007), pp. 1865-79.
    by A Stark, P Kheradpour, L Parts, J Brennecke, E Hodges, GJ Hannon, M Kellis
    posted to sequence-alignment rna-processing-post-transcriptional nucleic-acid-conformation molecular-sequence-data micrornas genome-insect genetic-markers gene-expression-regulation file-import-08-06-05 evolution-molecular drosophila-melanogaster base-sequence animals by adepace on 2008-06-05 16:02:29 as **
  • The evolution of arthropod segmentation mechanisms
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 26, No. 10. (1 October 2004), pp. 1108-16.
    by A Peel
    posted to models-biological genes-insect gene-expression-regulation-developmental file-import-08-06-05 evolution drosophila-melanogaster body-patterning biological-clocks arthropods animals by adepace on 2008-06-05 16:02:29 as **
  • Mutual exclusion of sensory bristles and tendons on the notum of dipteran flies
    Current biology : CB, Vol. 14, No. 12. (22 June 2004), pp. 1047-55.
    by K Usui, D Pistillo, P Simpson
    posted to transcription-factors tendons sequence-analysis-dna phenotype mutation molecular-sequence-data mechanoreceptors in-situ-hybridization immunohistochemistry gene-expression-regulation-developmental gene-components file-import-08-06-05 evolution england drosophila-proteins dna-binding-proteins diptera body-patterning basic-helix-loop-helix-transcription-factors base-sequence animals-genetically-modified animals by adepace on 2008-06-05 16:02:29 as **
  • Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
    Nature, Vol. 428, No. 6984. (15 April 2004), pp. 717-23.
    by MD Shapiro, ME Marks, CL Peichel, BK Blackman, KS Nereng, B Jónsson, D Schluter, DM Kingsley
    posted to transcription-factors smegmamorpha sequence-alignment rna quantitative-trait-loci pelvis paired-box-transcription-factors molecular-sequence-data mice messenger male homeodomain-proteins hindlimb gene-expression-regulation fish-proteins file-import-08-06-05 female evolution developmental body-constitution animals amino-acid-sequence by adepace on 2008-06-05 16:02:28 as **
  • GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p
    Genome biology, Vol. 8, No. 6. (18 June 2007), R116.
    by J Dekker
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • The origin of pattern and polarity in the Drosophila embryo
    Cell, Vol. 68, No. 2. (24 January 1992), pp. 201-19.
    by D St Johnston, C Nüsslein-Volhard
    posted to regulator oocytes nonmammalian morphogenesis larva genes gene-expression file-import-08-06-05 female embryo drosophila cytoplasm cell-nucleus animals by adepace on 2008-06-05 16:02:28 as **
  • The Regulatory Genome: Gene Regulatory Networks In Development And Evolution
    (30 May 2006)
    by EH Davidson
    posted to key--regulatory_network key--evolution file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • A brief history of Drosophila's contributions to genome research
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2216-8.
    by GM Rubin, EB Lewis
    posted to sequence-analysis-dna recombination-genetic portraits-as-topic physical-chromosome-mapping nobel-prize mutation history-20th-century genome genetics genes-insect file-import-08-06-05 drosophila-melanogaster computational-biology cloning-molecular chromosome-mapping animals-genetically-modified animals by adepace on 2008-06-05 16:02:28 as **
  • Using protein complexes to predict phenotypic effects of gene mutation
    Genome biology, Vol. 8, No. 11. (27 November 2007), R252.
    by HB Fraser, JB Plotkin
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • Functional architecture and evolution of transcriptional elements that drive gene coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-60.
    by CD Brown, DS Johnson, A Sidow
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • Differential regulation of the two transcripts from the Drosophila gap segmentation gene hunchback.
    The EMBO Journal, Vol. 7, No. 9. (1 September 1988), 2881.
    by C Schröder, D Tautz, E Seifert, H Jäckle
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • Developmental system drift and flexibility in evolutionary trajectories
    Evol Dev, Vol. 3, No. 2. (1 January 2001), pp. 109-19.
    by JR True, ES Haag
    posted to male file-import-08-06-05 female evolution drosophila developmental-biology animals by adepace on 2008-06-05 16:02:28 as **
  • Programming gene expression with combinatorial promoters
    Molecular systems biology, Vol. 3 (1 January 2007), 145.
    by RS Cox, MG Surette, MB Elowitz
    posted to promoter-regions-genetics models-genetic gene-library gene-expression-regulation-bacterial file-import-08-06-05 escherichia-coli by adepace on 2008-06-05 16:02:28 as **
  • Transcriptional regulation in Drosophila: the post-genome challenge
    Functional & integrative genomics, Vol. 1, No. 4. (1 March 2001), pp. 223-34.
    by MD Biggin, R Tjian
    posted to transcription regulator genome genetic genes gene-expression-regulation file-import-08-06-05 drosophila-melanogaster dna-binding-proteins animals by adepace on 2008-06-05 16:02:28 as **
  • Life-History Consequences of Divergent Selection on Egg Size in Drosophila melanogaster
    Am Nat, Vol. 154, No. 3. (1 September 1999), pp. 333-340.
    by L Schwarzkopf, MW Blows, MJ Caley
    posted to file-import-08-06-05 by adepace on 2008-06-05 16:02:28 as **
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-51.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
    posted to variation-genetics transcription saccharomyces-cerevisiae physiological genome genetic gene-expression-regulation fungal file-import-08-06-05 evolution environment adaptation by adepace on 2008-06-05 16:02:28 as **
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