APE: Analyses of Phylogenetics and Evolution in R language

by: Emmanuel Paradis, Julien Claude, Korbinian Strimmer

Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 289-290.

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Abstract

Summary: Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes. Availability: The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html#ape. APE is licensed under the GNU General Public License. 10.1093/bioinformatics/btg412

@article{citeulike:2743847, abstract = {Summary: Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes. Availability: The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html\#ape. APE is licensed under the GNU General Public License. 10.1093/bioinformatics/btg412}, author = {Paradis, Emmanuel and Claude, Julien and Strimmer, Korbinian }, citeulike-article-id = {2743847}, doi = {http://dx.doi.org/10.1093/bioinformatics/btg412}, journal = {Bioinformatics}, keywords = {evolution, phylogenetics, phylogeny, r\_language}, month = {January}, number = {2}, pages = {289--290}, posted-at = {2008-05-02 02:54:38}, priority = {2}, title = {APE: Analyses of Phylogenetics and Evolution in R language}, url = {http://dx.doi.org/10.1093/bioinformatics/btg412}, volume = {20}, year = {2004} }

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TY - JOUR ID - citeulike:2743847 L3 - citeulike-article-id:2743847 TI - APE: Analyses of Phylogenetics and Evolution in R language JF - Bioinformatics VL - 20 IS - 2 SP - 289 EP - 290 N2 - Summary: Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes. Availability: The program is free and available from the official R package archive at http://cran.r-project.org/src/contrib/PACKAGES.html#ape. APE is licensed under the GNU General Public License. 10.1093/bioinformatics/btg412 KW - evolution KW - phylogenetics KW - phylogeny KW - r_language AU - Paradis, Emmanuel AU - Claude, Julien AU - Strimmer, Korbinian PY - 2004/01/22/ UR - http://dx.doi.org/10.1093/bioinformatics/btg412 ER -

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