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aalibes tools [26 articles]

Neue Publikationen in aalibes Bibliothek eingetragen unter dem Bezeichner: tools. You can also see everyone's tools.
  • PaLS: filtering common literature, biological terms and pathway information
    Nucl. Acids Res. (8 May 2008), gkn251.
    by Andreu Alibes, Andres Canada, Ramon Diaz-Uriarte
    posted to tools by aalibes on 2008-05-08 14:58:22 as read along with 3 people daed AlexanderPico jyuh
  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.
    by Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo
    posted to tools by aalibes on 2008-03-28 20:44:18 as ** along with 5 people ellakat sgoetz RMGraze macavity1g Garamonfok
  • GeneLibrarian: an effective gene-information summarization and visualization system
    BMC Bioinformatics, Vol. 7 (29 August 2006), 392.
    by Jung-Hsien Chiang, Jyh-Wei Shin, Heng-Hui Liu, Chong-Liang Chin
    posted to tools by aalibes on 2008-01-22 15:46:41 as ** along with 2 people and 1 group yas rdiaz T_lab
  • GeneTools - Application for functional annotation and statistical hypothesis testing
    BMC Bioinformatics, Vol. 7 (24 October 2006), 470.
    by Vidar Beisvag, Frode KR Junge, Hallgeir Bergum, Lars Jolsum, Stian Lydersen, Clara-Cecilie Gunther, Heri Ramampiaro, Mette Langaas, Arne K Sandvik, Astrid Laegreid
    posted to tools by aalibes on 2008-01-22 15:46:29 as ** along with 2 people jyuh rdiaz
  • DAVID Gene Functional Classification Tool: A novel biological module-centric algorithm to functionally analyze large gene list
    Genome Biology, Vol. 8 (04 September 2007), R183.
    by Da W Huang, Brad T Sherman, Qina Tan, Jack R Collins, Gregory W Alvord, Jean Roayaei, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
    posted to tools by aalibes on 2008-01-22 15:39:34 as ** along with 6 people heliopais jyuh dragonrez jfr rdiaz mellabee
  • SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ramon Diaz-Uriarte
    posted to tools by aalibes on 2008-01-22 09:43:20 as ** along with 4 people jfr jyuh chad_davis frohike
  • Don't Make Me Think : A Common Sense Approach to Web Usability (2nd Edition)
    (18 August 2005)
    by Steve Krug
    posted to tools by aalibes on 2008-01-15 09:16:56 as read along with 13 people and 3 groups ajpope jeanette cmalek twetering sgilliland slaqua OriginalLurch tulaydemir mdjimenez Najko misskowalski startree grosdonk Knowledge_Management clab Social_Learning_Software_Lab
  • Biskit -- a software platform for structural bioinformatics.
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 769-770.
    by R Gruenberg, M Nilges, J Leckner
    posted to protein_structure tools by aalibes on 2007-11-14 17:00:05 as read along with 3 people and 1 group jyuh bicko chad_davis structural_bioinformatics
  • Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite.
    Nucleic Acids Res, Vol. Web Server issue (8 May 2007), pp. W75-W80.
    by Ramón Diaz-Uriarte, Andreu Alibes, Edward RR Morrissey, Andrés Cañada, Oscar MM Rueda, Mariana LL Neves
    posted to tools by aalibes on 2007-10-01 14:33:34 as read along with 1 person jyuh
  • GeneVenn - A web application for comparing gene lists using Venn diagrams.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 420-422.
    by M Pirooznia, V Nagarajan, Y Deng
    posted to tools by aalibes on 2007-07-02 09:03:32 as ** along with 2 people jyuh virajj
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to tools transcription_factors by aalibes on 2007-05-17 15:17:52 as ** along with 4 people and 2 groups indigoviolet jguinney nklee heliopais EisenLab Motif Discovery
  • GENECODIS: A web-based tool for finding significant concurrent annotations in gene lists
    Genome Biology, Vol. 8 (04 January 2007), R3.
    by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Alberto Pascual-Montano
    posted to tools by aalibes on 2007-02-25 16:21:42 as ** along with 2 people and 1 group jfr ealloza BioinfoCIPF
  • Asterias: A Parallelized Web-based Suite for the Analysis of Expression and aCGH Data
    Cancer Informatics, Vol. 2 (February 2007), pp. 1-9.
    by Andreu Alibes, Edward R Morrissey, Andrés Cañada, Oscar M Rueda, David Casado, Patricio Yankilevich, Ramón Diaz-Uriarte
    posted to tools by aalibes on 2007-02-20 08:54:49 as read
  • IDconverter and IDClight: Conversion and annotation of gene and protein IDs
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreu Alibes, Patricio Yankilevich, Andres Canada, Ramon Diaz-Uriarte
    posted to tools by aalibes on 2007-01-11 10:33:23 as read along with 6 people and 1 group mdstobbe srp33 cerami jyuh jfr grahamc ParkinsonLab_at_MaRS
  • Babel's tower revisited: a universal resource for cross-referencing across annotation databases.
    Bioinformatics (26 October 2006)
    by Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri
    posted to tools by aalibes on 2006-12-20 09:53:49 as ** along with 6 people jyuh chad_davis dullhunk fisherp plofje kynn
  • The FoldX web server: an online force field.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Schymkowitz, J Borg, F Stricher, R Nys, F Rousseau, L Serrano
    posted to tools by aalibes on 2006-10-09 15:09:23 as ** along with 2 people chad_davis neils
  • New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by P Khatri, V Desai, AL Tarca, S Sellamuthu, DE Wildman, R Romero, S Draghici
    posted to tools by aalibes on 2006-08-23 14:03:25 as **
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to go ontologies tools by aalibes on 2006-07-12 11:36:46 as ** along with 31 people and 5 groups dgront marck carlk pablomendes CitoJam miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • GeneMerge--post-genomic analysis, data mining, and hypothesis testing.
    Bioinformatics, Vol. 19, No. 7. (1 May 2003), pp. 891-892.
    by CI Castillo-Davis, DL Hartl
    posted to tools by aalibes on 2006-06-21 17:53:32 as ** along with 1 person mitko
  • Recent additions and improvements to the Onto-Tools.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by P Khatri, S Sellamuthu, P Malhotra, K Amin, A Done, S Draghici
    posted to tools by aalibes on 2006-06-21 17:51:49 as **
  • RESOURCERER: a database for annotating and linking microarray resources within and across species.
    Genome Biol, Vol. 2, No. 11. (2001)
    by J Tsai, R Sultana, Y Lee, G Pertea, S Karamycheva, V Antonescu, J Cho, B Parvizi, F Cheung, J Quackenbush
    posted to tools by aalibes on 2006-06-21 17:49:56 as ** along with 1 person incovoma
  • A gene network for navigating the literature.
    Nat Genet, Vol. 36, No. 7. (July 2004)
    by R Hoffmann, A Valencia
    posted to tools by aalibes on 2006-03-08 18:33:07 as ** along with 5 people and 2 groups yas benny caporaso minostro adoms T_lab biomedical-nlp
  • An extensible application for assembling annotation for genomic data.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 155-156.
    by J Zhang, V Carey, R Gentleman
    posted to tools by aalibes on 2006-03-07 15:32:48 as ** along with 1 person and 1 group irenas dbk-lab
  • SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
    Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 219-223.
    by Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C Matese, Tina Hernandez-Boussard, Christian A Rees, Michael J Cherry, David Botstein, Patrick O Brown, Ash A Alizadeh
    posted to tools by aalibes on 2006-03-07 15:30:41 as ** along with 2 people jfr eweaver
  • MatchMiner: a tool for batch navigation among gene and gene product identifiers.
    Genome Biol, Vol. 4, No. 4. (2003)
    by KJ Bussey, D Kane, M Sunshine, S Narasimhan, S Nishizuka, WC Reinhold, B Zeeberg, W Ajay, JN Weinstein
    posted to tools by aalibes on 2006-03-07 15:26:18 as ** along with 1 person ranb
  • GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by JM Vaquerizas, L Conde, P Yankilevich, A Cabezón, P Minguez, R Díaz-Uriarte, F Al-Shahrour, J Herrero, J Dopazo
    posted to tools by aalibes on 2005-10-20 15:35:24 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
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