FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

by: Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo

Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.

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Abstract

Summary: We present a simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over- or under-represented in sets of genes within the context of a genome-scale experiment (DNA microarray, proteomics, etc.). Said procedure has been implemented as a web application, FatiGO, allowing for easy and interactive querying. FatiGO, which takes the multiple-testing nature of statistical contrast into account, currently includes GO associations for diverse organisms (human, mouse, fly, worm and yeast) and the TrEMBL/Swissprot GOAnnotations@EBI correspondences from the European Bioinformatics Institute. Availability: http://fatigo.bioinfo.cnio.es 10.1093/bioinformatics/btg455

@article{citeulike:691342, abstract = {Summary: We present a simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over- or under-represented in sets of genes within the context of a genome-scale experiment (DNA microarray, proteomics, etc.). Said procedure has been implemented as a web application, FatiGO, allowing for easy and interactive querying. FatiGO, which takes the multiple-testing nature of statistical contrast into account, currently includes GO associations for diverse organisms (human, mouse, fly, worm and yeast) and the TrEMBL/Swissprot GOAnnotations@EBI correspondences from the European Bioinformatics Institute. Availability: http://fatigo.bioinfo.cnio.es 10.1093/bioinformatics/btg455}, author = {Al-Shahrour, Fatima and Diaz-Uriarte, Ramon and Dopazo, Joaquin }, citeulike-article-id = {691342}, doi = {http://dx.doi.org/10.1093/bioinformatics/btg455}, journal = {Bioinformatics}, keywords = {tools}, month = {March}, number = {4}, pages = {578--580}, posted-at = {2008-03-28 20:44:18}, priority = {2}, title = {FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes}, url = {http://dx.doi.org/10.1093/bioinformatics/btg455}, volume = {20}, year = {2004} }

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TY - JOUR ID - citeulike:691342 L3 - citeulike-article-id:691342 TI - FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes JF - Bioinformatics VL - 20 IS - 4 SP - 578 EP - 580 N2 - Summary: We present a simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over- or under-represented in sets of genes within the context of a genome-scale experiment (DNA microarray, proteomics, etc.). Said procedure has been implemented as a web application, FatiGO, allowing for easy and interactive querying. FatiGO, which takes the multiple-testing nature of statistical contrast into account, currently includes GO associations for diverse organisms (human, mouse, fly, worm and yeast) and the TrEMBL/Swissprot GOAnnotations@EBI correspondences from the European Bioinformatics Institute. Availability: http://fatigo.bioinfo.cnio.es 10.1093/bioinformatics/btg455 KW - tools AU - Al-Shahrour, Fatima AU - Diaz-Uriarte, Ramon AU - Dopazo, Joaquin PY - 2004/03/01/ UR - http://dx.doi.org/10.1093/bioinformatics/btg455 ER -

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