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Retchless no-tag [49 articles]

Neue Publikationen in Retchless Bibliothek eingetragen unter dem Bezeichner: no-tag. You can also see everyone's no-tag.
  • Modularity of stress response evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7500-7505.
    by Amoolya H Singh, Denise M Wolf, Peggy Wang, Adam P Arkin
    posted to no-tag by Retchless on 2008-06-02 16:48:57 as ** along with 1 person deanmalmgren
  • PLoS Computational Biology: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks
    posted to no-tag by Retchless on 2008-05-26 16:28:45 as **
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to no-tag by Retchless on 2008-05-15 14:12:26 as ** along with 7 people and 1 group semrich biomcgary djkt chad_davis gjuggler caseybrown stajich Berkeley Mycology
  • Protein abundance profiling of the Escherichia coli cytosol
    BMC Genomics, Vol. 9 (27 February 2008), 102.
    by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, Ulrich F Hartl, Michael J Kerner, Dmitrij Frishman
    posted to no-tag by Retchless on 2008-04-01 18:22:23 as ** along with 2 people brianb osilander
  • Winners don/'t punish
    Nature, Vol. 452, No. 7185. (20 March 2008), pp. 348-351.
    by Anna Dreber, David G Rand, Drew Fudenberg, Martin A Nowak
    posted to no-tag by Retchless on 2008-03-20 17:18:44 as ** along with 12 people and 1 group mits sen_cheng niallhaslam hardin dullhunk gennaro Koh cam_webb shivakmr eegilbert yuhc cwmccabe VisionLab
  • Bet-hedging and epigenetic inheritance in bacterial cell development
    Proceedings of the National Academy of Sciences (6 March 2008), 0700463105.
    by Jan-Willem Veening, Eric J Stewart, Thomas W Berngruber, Francois Taddei, Oscar P Kuipers, Leendert W Hamoen
    posted to no-tag by Retchless on 2008-03-20 17:14:24 as ** along with 1 person madhadron
  • Genome clashes in hybrids: insights from gene expression
    Heredity, Vol. aop, No. current.
    by CR Landry, DL Hartl, JM Ranz
    posted to no-tag by Retchless on 2007-11-26 16:10:52 as ** along with 1 person natstreet
  • Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network
    BMC Bioinformatics, Vol. 8 (25 October 2007), 413.
    by David J Irons, Nicholas AM Monk
    posted to no-tag by Retchless on 2007-11-14 23:35:41 as ** along with 1 person and 1 group tmmurali csb_journal_club_public
  • Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e153.
    by David Halpern, Hélène Chiapello, Sophie Schbath, Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, El
    posted to no-tag by Retchless on 2007-11-12 23:39:00 as ** along with 2 people cabbagezs Ema
  • Temporal Fragmentation of Speciation in Bacteria
    Science, Vol. 317, No. 5841. (24 August 2007), pp. 1093-1096.
    by Adam C Retchless, Jeffrey G Lawrence
    posted to no-tag by Retchless on 2007-10-15 17:25:20 as ** along with 1 person operon
  • Effects of body size and lifestyle on evolution of mammal life histories
    Proceedings of the National Academy of Sciences (12 October 2007), 0707725104.
    by Richard M Sibly, James H Brown
    posted to no-tag by Retchless on 2007-10-15 17:24:44 as **
  • PLoS ONE: Predicting Prokaryotic Ecological Niches Using Genome Sequence Analysis
    posted to no-tag by Retchless on 2007-09-10 23:22:04 as ***
  • Genetic evidence for complex speciation of humans and chimpanzees : Article : Nature
    posted to no-tag by Retchless on 2007-05-04 02:26:09 as **
  • ScienceDirect - Current Biology : Evolutionary Biology: How Did the Human Species Form?
    posted to no-tag by Retchless on 2007-05-04 02:25:14 as **
  • Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Shay Stern, Tali Dror, Elad Stolovicki, Naama Brenner, Erez Braun
    posted to no-tag by Retchless on 2007-05-03 18:02:34 as ** along with 2 people kynn zwang
  • Wagner's canalization model
    Theoretical Population Biology, Vol. 71, No. 2. (March 2007), pp. 121-130.
    by Emilia Huerta-Sanchez, Rick Durrett
    posted to no-tag by Retchless on 2007-04-30 14:32:07 as **
  • Evolution of coadaptation in a two-locus epistatic system.
    Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2324-2332.
    by KR Takahasi, F Tajima
    posted to no-tag by Retchless on 2007-04-25 16:51:16 as **
  • Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus.
    PLoS Pathog, Vol. 3, No. 1. (January 2007)
    by F Escriu, A Fraile, F García-Arenal
    posted to no-tag by Retchless on 2007-04-25 16:50:12 as **
  • MOLECULAR-FUNCTIONAL STUDIES OF ADAPTIVE GENETIC VARIATION IN PROKARYOTES AND EUKARYOTES - Annual Review of Genetics, 34(1):593 - Abstract
    posted to no-tag by Retchless on 2007-04-25 16:49:06 as **
  • Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of -Proteobacteria
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 805-813.
    by Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
    posted to no-tag by Retchless on 2007-04-25 16:43:30 as ** along with 1 person operon
  • Protein Interactions Limit the Rate of Evolution of Photosynthetic Genes in Cyanobacteria
    Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2179-2189.
    by Tuo Shi, Thomas S Bibby, Lin Jiang, Andrew J Irwin, Paul G Falkowski
    posted to no-tag by Retchless on 2007-04-25 16:41:42 as ** along with 1 person tuoshi
  • The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting
    Molecular Cell, Vol. 24, No. 5. (8 December 2006), pp. 747-757.
    by Nikos B Reppas, Joseph T Wade, George[no-Break Church, Kevin Struhl
    posted to no-tag by Retchless on 2007-04-09 02:01:38 as ** along with 1 person aswin
  • An environmental signature for 323 microbial genomes based on codon adaptation indices
    Genome Biology, Vol. 7 (07 December 2006), R114.
    by Hanni Willenbrock, Carsten Friis, Agnieszka S Juncker, David W Ussery
    posted to no-tag by Retchless on 2007-03-20 03:38:18 as ** along with 3 people gpalidwor aswin marenzelleria
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to no-tag by Retchless on 2007-03-20 03:32:00 as ** along with 5 people and 2 groups JeremyZucker lfriedl RMGraze alexg raiyar kdl steinmetzlab
  • Codon adaptation index as a measure of dominating codon bias
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2005-2015.
    by A Carbone, A Zinovyev, F Kepes
    posted to no-tag by Retchless on 2007-03-20 03:31:48 as ** along with 3 people aaronsmith operon marenzelleria
  • Error minimization explains the codon usage of highly expressed genes in Escherichia coli.
    Gene, Vol. 387, No. 1-2. (31 January 2007), pp. 150-155.
    by HS Najafabadi, J Lehmann, M Omidi
    posted to no-tag by Retchless on 2007-03-20 02:11:06 as **
  • Prediction of highly expressed genes in microbes based on chromatin accessibility
    BMC Molecular Biology, Vol. 8 (13 February 2007), 11.
    by Hanni Willenbrock, David W Ussery
    posted to no-tag by Retchless on 2007-03-20 02:10:38 as **
  • Coevolution of codon usage and transfer RNA abundance.
    Nature, Vol. 325, No. 6106. (5 1987), pp. 728-730.
    by M Bulmer
    posted to no-tag by Retchless on 2007-03-20 02:08:00 as ** along with 1 person operon
  • Codon bias and gene expression
    FEBS Letters, Vol. 285, No. 2. (July 1991), pp. 165-169.
    by CG Kurland
    posted to no-tag by Retchless on 2007-03-20 01:56:09 as **
  • Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae
    PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2402-2407.
    by GN Vemuri, MA Eiteman, JE Mcewen, L Olsson, J Nielsen
    posted to no-tag by Retchless on 2007-02-14 20:37:11 as **
  • Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution
    Genetics, Vol. 175, No. 1. (1 January 2007), pp. 429-439.
    by Scott J Emrich, Li Li, Tsui-Jung Wen, Marna D Yandeau-Nelson, Yan Fu, Ling Guo, Hui-Hsien Chou, Srinivas Aluru, Daniel A Ashlock, Patrick S Schnable
    posted to no-tag by Retchless on 2007-02-14 20:31:20 as ** along with 1 person semrich
  • Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock
    PNAS, Vol. 103, No. 46. (14 November 2006), pp. 17468-17473.
    by Natalia B Ivleva, Tiyu Gao, Andy C Liwang, Susan S Golden
    posted to no-tag by Retchless on 2006-11-15 18:23:03 as **
  • A Maternal–Offspring Coadaptation Theory for the Evolution of Genomic Imprinting
    PLoS Biology, Vol. 4, No. 12. (1 December 2006), e380.
    by Jason B Wolf, Reinmar Hager
    posted to no-tag by Retchless on 2006-11-15 18:23:01 as **
  • Proteome analysis of yeast response to various nutrient limitations
    Mol Syst Biol, Vol. 2 (2006), pp. msb4100069-E1-msb4100069-E16.
    by Annemieke Kolkman, Pascale Daran-Lapujade, Asier Fullaondo, Maurien M Olsthoorn, Jack T Pronk, Monique Slijper, Albert J Heck
    posted to no-tag by Retchless on 2006-05-23 15:44:26 as ** along with 3 people and 2 groups okarsligil pau roys Bioinformatics RNAtransport
  • Residues crucial for maintaining short paths in network communication mediate signaling in proteins
    Mol Syst Biol, Vol. 2, No. 1. (2 May 2006), pp. msb4100063-E1-msb4100063-E12.
    by Del, Hirotomo Fujihashi, Dolors Amoros, Ruth Nussinov
    posted to no-tag by Retchless on 2006-05-10 18:52:12 as **** along with 1 person choonpeng
  • Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain.
    Proc Natl Acad Sci U S A, Vol. 103, No. 10. (7 March 2006), pp. 3669-3674.
    by P Forterre
    posted to no-tag by Retchless on 2006-05-10 18:28:24 as ** along with 3 people and 4 groups jwm marcius brixtonmc Radiation_Damage Stressosome BioinfoCIPF SGU-CIPF
  • Protein stability promotes evolvability
    PNAS, Vol. 103, No. 15. (11 April 2006), pp. 5869-5874.
    by Jesse D Bloom, Sy T Labthavikul, Christopher R Otey, Frances H Arnold
    posted to no-tag by Retchless on 2006-04-12 00:04:52 as ** along with 10 people and 2 groups rklancer lna Einat penka cmm redelings BioNica Cristiano wilbur cdeane structural_bioinformatics FAB-lab
  • PLoS Computational Biology: A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions
    posted to no-tag by Retchless on 2006-04-01 01:15:23 as **
  • PLoS Computational Biology: Dynamical Principles of Two-Component Genetic Oscillators
    posted to no-tag by Retchless on 2006-04-01 00:43:50 as **
  • PLoS Computational Biology: Dependency Map of Proteins in the Small Ribosomal Subunit
    posted to no-tag by Retchless on 2006-03-10 16:47:28 as **
  • Horizontal Gene Transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic carbohydrates rich environment.
    BMC Genomics, Vol. 7, No. 1. (10 February 2006)
    by Guenola Ricard, Neil R McEwan, Bas E Dutilh, Jean-Pierre P Jouany, Didier Macheboeuf, Makoto Mitsumori, Freda M McIntosh, Tadeusz Michalowski, Takafumi Nagamine, Nancy Nelson, Charles J Newbold, Eli Nsabimana, Akio Takenaka, Nadine A Thomas, Kazunari Ushida, Johannes H Hackstein, Martijn A Huynen
    posted to no-tag by Retchless on 2006-02-27 23:06:23 as ** along with 1 person eelirac
  • The Royal Society - Article
    posted to no-tag by Retchless on 2006-01-30 23:13:30 as **
  • PLoS Biology: The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    posted to no-tag by Retchless on 2006-01-27 20:33:50 as **
  • Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus
    Trends in Microbiology, Vol. In Press, Corrected Proof
    by Uri Gophna, Robert L Charlebois, Ford W Doolittle
    posted to no-tag by Retchless on 2006-01-27 16:41:03 as **
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to no-tag by Retchless on 2006-01-24 22:55:39 as ** along with 10 people and 2 groups tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor nedwards kdl Bioinformatics
  • Birth of a metabolic gene cluster in yeast by adaptive gene relocation
    Nature Genetics, Vol. 37, No. 7. (12 June 2005), pp. 777-782.
    by Simon Wong, Kenneth H Wolfe
    posted to no-tag by Retchless on 2006-01-24 22:12:25 as ** along with 2 people and 1 group penka jpoyatos Nie
  • PLoS Computational Biology: Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization
    posted to no-tag by Retchless on 2006-01-24 20:57:11 as ** along with 1 person hillevi
  • Insights on biology and evolution from microbial genome sequencing
    Genome Res., Vol. 15, No. 12. (1 December 2005), pp. 1603-1610.
    by Claire M Fraser-Liggett
    posted to no-tag by Retchless on 2005-12-28 22:02:54 as ** along with 2 people operon jmeppley
  • Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1002-1013.
    by MJ Lercher, JV Chamary, LD Hurst
    posted to no-tag by Retchless on 2005-11-23 18:12:47 as **
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