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Lombardo_7s no-tag [33 articles]

Neue Publikationen in Lombardo_7s Bibliothek eingetragen unter dem Bezeichner: no-tag. You can also see everyone's no-tag.
  • Theory and applications of the generalized born solvation model in macromolecular simulations
    Biopolymers, Vol. 56, No. 4. (4 December 2001), pp. 275-291.
    by Vickie Tsui, David A Case
    posted to no-tag by Lombardo_7 on 2008-12-02 13:38:45 as ** along with 2 people ttjoseph RamuAnandakrishnan
  • Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c 551 .
    Journal of molecular biology, Vol. 61, No. 2. (28 October 1971), pp. 409-424.
    by AD McLachlan
    posted to no-tag by Lombardo_7 on 2008-08-12 16:40:00 as read
  • The R Project for Statistical Computing
    posted to no-tag by Lombardo_7 on 2008-08-12 15:30:00 as read along with 1 person ryanraaum
  • Characterization of protein-protein interfaces.
    The protein journal, Vol. 27, No. 1. (January 2008), pp. 59-70.
    by C Yan, F Wu, RL Jernigan, D Dobbs, V Honavar
    posted to no-tag by Lombardo_7 on 2008-08-12 14:55:09 as read along with 2 people bicko wonaya
  • Additivity of mutational effects in proteins.
    Biochemistry, Vol. 29, No. 37. (18 September 1990), pp. 8509-8517.
    by JA Wells
    posted to no-tag by Lombardo_7 on 2008-08-12 14:54:03 as read
  • Solvated docking: introducing water into the modelling of biomolecular complexes.
    Bioinformatics (9 August 2006)
    by Aalt D J D van Dijk, Alexandre M J J M Bonvin
    posted to no-tag by Lombardo_7 on 2008-08-12 14:53:05 as read along with 5 people and 1 group arlam msuarezdiez BragilMassoud bicko jteyra group
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to no-tag by Lombardo_7 on 2008-08-12 14:49:31 as read along with 27 people and 1 group Md_2007 sebk cen4ik usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu newton1234 biomedical-nlp
  • SCOWLP classification: Structural comparison and analysis of protein binding regions
    BMC Bioinformatics, Vol. 9 (08 January 2008), 9.
    by Joan Teyra, Maciej Paszkowski-Rogacz, Gerd Anders, Teresa M Pisabarro
    posted to no-tag by Lombardo_7 on 2008-08-12 14:48:39 as read along with 6 people dimka bicko chad_davis carlk jteyra paszkows
  • Characterization of interfacial solvent in protein complexes and contribution of <I>wet spots</I> to the interface description
    Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (2007), pp. 1087-1095.
    by Joan Teyra, MT Pisabarro
    posted to no-tag by Lombardo_7 on 2008-08-12 14:47:58 as read along with 4 people bicko choonpeng marti jteyra
  • SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.
    BMC Bioinformatics, Vol. 7, No. 1. (2 March 2006)
    by Joan Teyra, Andreas Doms, Michael Schroeder, M Teresa T Pisabarro
    posted to no-tag by Lombardo_7 on 2008-08-12 14:47:24 as read along with 5 people and 2 groups jwm bicko chad_davis choonpeng jteyra Radiation_Damage Stressosome
  • Contact prediction using mutual information and neural nets
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by George Shackelford, Kevin Karplus
    posted to no-tag by Lombardo_7 on 2008-08-12 14:46:46 as read along with 2 people cjeans RamuAnandakrishnan
  • Conserved residue clustering and protein structure prediction.
    Proteins, Vol. 52, No. 2. (1 August 2003), pp. 225-235.
    by O Schueler-Furman, D Baker
    posted to no-tag by Lombardo_7 on 2008-08-12 14:46:14 as read
  • Database of homology-derived protein structures and the structural meaning of sequence alignment.
    Proteins, Vol. 9, No. 1. (1991), pp. 56-68.
    by C Sander, R Schneider
    posted to no-tag by Lombardo_7 on 2008-08-12 14:45:07 as read along with 2 people chad_davis ca3295
  • A molecular dynamics approach to study the importance of solvent in protein interactions
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Sergey Samsonov, Joan Teyra, Teresa M Pisabarro
    posted to no-tag by Lombardo_7 on 2008-08-12 14:44:26 as read along with 2 people jteyra dimka
  • Ideal amino acid exchange forms for approximating substitution matrices
    Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (2007), pp. 379-393.
    by Piotr Pokarowski, Andrzej Kloczkowski, Szymon Nowakowski, Maria Pokarowska, Robert L Jernigan, Andrzej Kolinski
    posted to no-tag by Lombardo_7 on 2008-08-12 14:42:55 as read along with 1 person bicko
  • A simple tool to explore the distance distribution of correlated mutations in proteins.
    Biophys Chem, Vol. 119, No. 3. (1 February 2006), pp. 240-246.
    by R Perez-Jimenez, R Godoy-Ruiz, A Parody-Morreale, B Ibarra-Molero, JM Sanchez-Ruiz
    posted to no-tag by Lombardo_7 on 2008-08-12 14:42:26 as read along with 1 person gbart
  • Correlated mutations contain information about protein-protein interaction.
    J Mol Biol, Vol. 271, No. 4. (29 August 1997), pp. 511-523.
    by F Pazos, M Helmer-Citterich, G Ausiello, A Valencia
    posted to no-tag by Lombardo_7 on 2008-08-12 14:41:45 as read along with 3 people gurkanbebek cjeans tale
  • Water in protein structure prediction.
    Proc Natl Acad Sci U S A, Vol. 101, No. 10. (9 March 2004), pp. 3352-3357.
    by GA Papoian, J Ulander, MP Eastwood, Z Luthey-Schulten, PG Wolynes
    posted to no-tag by Lombardo_7 on 2008-08-12 14:41:06 as read along with 3 people and 2 groups ana allamas grothp structural_bioinformatics Bioinformatics
  • Can correlated mutations in protein domain families be used for protein design?
    Brief Bioinform, Vol. 2, No. 3. (1 January 2001), pp. 279-288.
    by Sylvia B Nagl
    posted to no-tag by Lombardo_7 on 2008-08-12 14:40:14 as read along with 1 person jteyra
  • Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551
    Journal of Molecular Biology, Vol. 61, No. 2. (28 October 1971), pp. 409-424.
    by AD Mclachlan
    posted to no-tag by Lombardo_7 on 2008-08-12 14:39:34 as read along with 1 person cjeans
  • Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core
    Nature, Vol. 352, No. 6334. (1991), pp. 448-451.
    by Christopher Lee, Michael Levitt
    posted to no-tag by Lombardo_7 on 2008-08-12 14:38:35 as read
  • Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
    BMC Bioinformatics, Vol. 7 (16 November 2006), 503.
    by Petras J Kundrotas, Emil G Alexov
    posted to no-tag by Lombardo_7 on 2008-08-12 14:37:49 as read
  • Correlated substitution analysis and the prediction of amino acid structural contacts
    Brief Bioinform (13 November 2007), bbm052.
    by David S Horner, Walter Pirovano, Graziano Pesole
    posted to no-tag by Lombardo_7 on 2008-08-12 14:37:12 as read along with 3 people and 3 groups barry zwang sobolevnrm structural_bioinformatics Bioinformatics baker-group
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to no-tag by Lombardo_7 on 2008-08-12 14:36:29 as read along with 7 people bicko gbart ramensky cjeans tale mingzhi friendpine
  • Additivity of Mutant Effects Assessed by Binomial Mutagenesis
    PNAS, Vol. 90, No. 9. (1 May 1993), pp. 4246-4250.
    by Lm Gregoret, Rt Sauer
    posted to no-tag by Lombardo_7 on 2008-08-12 14:35:57 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Correlated mutations and residue contacts in proteins.
    Proteins, Vol. 18, No. 4. (April 1994), pp. 309-317.
    by U Göbel, C Sander, R Schneider, A Valencia
    posted to no-tag by Lombardo_7 on 2008-08-12 14:35:19 as read along with 5 people gbart analogAI dgront cjeans jteyra
  • Co-evolving residues in membrane proteins
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3312-3319.
    by Angelika Fuchs, Antonio J Martin-Galiano, Matan Kalman, Sarel Fleishman, Nir Ben-Tal, Dmitrij Frishman
    posted to no-tag by Lombardo_7 on 2008-08-12 14:33:50 as read along with 6 people and 2 groups operon breden cjeans zwang blasco_morozzo phoenixzxl SFUAntibodyResearch signal-duplication
  • On evolutionary conservation of thermodynamic coupling in proteins.
    J Biol Chem, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to no-tag by Lombardo_7 on 2008-08-12 14:33:17 as read along with 7 people and 2 groups ana barry gbart cjeans tale friendpine ca3295 structural_bioinformatics Bioinformatics
  • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221.
    by AA Fodor, RW Aldrich
    posted to no-tag by Lombardo_7 on 2008-08-12 14:32:26 as read along with 6 people and 2 groups ana gbart cjeans jlh64 mingzhi dgront structural_bioinformatics Bioinformatics
  • Pfam: clans, web tools and services.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by RD Finn, J Mistry, B Schuster-Böckler, S Griffiths-Jones, V Hollich, T Lassmann, S Moxon, M Marshall, A Khanna, R Durbin, SR Eddy, EL Sonnhammer, A Bateman
    posted to no-tag by Lombardo_7 on 2008-08-12 14:31:49 as read along with 11 people cerca gbart dullhunk massivemayhem cjeans siebertm lpfernandes pablomendes antonkratz natstreet phoenixzxl
  • Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations
    Proteins: Structure, Function, and Genetics, Vol. 45, No. S5. (2001), pp. 157-162.
    by Piero Fariselli, Osvaldo Olmea, Alfonso Valencia, Rita Casadio
    posted to no-tag by Lombardo_7 on 2008-08-12 14:30:23 as read
  • A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction.
    Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153.
    by E Eyal, M Frenkel-Morgenstern, V Sobolev, S Pietrokovski
    posted to no-tag by Lombardo_7 on 2008-08-12 14:29:20 as read along with 2 people bicko cjeans
  • Similar chemistry, but different bond preferences in inter versus intra-protein interactions.
    Proteins (7 February 2008)
    by Mati Cohen, Dana Reichmann, Hani Neuvirth, Gideon Schreiber
    posted to no-tag by Lombardo_7 on 2008-08-12 14:27:57 as read along with 4 people viktor21614 bicko higueruelo kgutwin
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